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This page was generated on 2025-02-10 10:12 -0500 (Mon, 10 Feb 2025).

HostnameOSArch (*)R versionInstalled pkgs
teran2Linux (Ubuntu 24.04.1 LTS)x86_64R Under development (unstable) (2025-01-20 r87609) -- "Unsuffered Consequences" 869
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Package 157/217HostnameOS / ArchINSTALLBUILDCHECK
pRoloc 1.47.1  (landing page)
Laurent Gatto
Snapshot Date: 2025-02-10 06:00 -0500 (Mon, 10 Feb 2025)
git_url: https://git.bioconductor.org/packages/pRoloc
git_branch: devel
git_last_commit: 11d5560
git_last_commit_date: 2024-11-23 09:31:00 -0500 (Sat, 23 Nov 2024)
teran2Linux (Ubuntu 24.04.1 LTS) / x86_64  OK    ERROR  skipped

BUILD results for pRoloc on teran2

To the developers/maintainers of the pRoloc package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: pRoloc
Version: 1.47.1
Command: /home/rapidbuild/bbs-3.21-bioc-rapid/R/bin/R CMD build --keep-empty-dirs --no-resave-data pRoloc
StartedAt: 2025-02-10 07:23:29 -0500 (Mon, 10 Feb 2025)
EndedAt: 2025-02-10 07:28:43 -0500 (Mon, 10 Feb 2025)
EllapsedTime: 314.2 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

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### Running command:
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###   /home/rapidbuild/bbs-3.21-bioc-rapid/R/bin/R CMD build --keep-empty-dirs --no-resave-data pRoloc
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* checking for file ‘pRoloc/DESCRIPTION’ ... OK
* preparing ‘pRoloc’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘v01-pRoloc-tutorial.Rmd’ using rmarkdown
Failed to query server: Failed to activate service 'org.freedesktop.timedate1': timed out (service_start_timeout=25000ms)
--- finished re-building ‘v01-pRoloc-tutorial.Rmd’

--- re-building ‘v02-pRoloc-ml.Rmd’ using rmarkdown
--- finished re-building ‘v02-pRoloc-ml.Rmd’

--- re-building ‘v03-pRoloc-bayesian.Rmd’ using rmarkdown
--- finished re-building ‘v03-pRoloc-bayesian.Rmd’

--- re-building ‘v04-pRoloc-goannotations.Rmd’ using rmarkdown
--- finished re-building ‘v04-pRoloc-goannotations.Rmd’

--- re-building ‘v05-pRoloc-transfer-learning.Rmd’ using rmarkdown

Quitting from lines 143-147 [ap] (v05-pRoloc-transfer-learning.Rmd)
Error: processing vignette 'v05-pRoloc-transfer-learning.Rmd' failed with diagnostics:
The given dataset:  hsapiens_gene_ensembl , is not valid.  Correct dataset names can be obtained with the listDatasets() function.
--- failed re-building ‘v05-pRoloc-transfer-learning.Rmd’

SUMMARY: processing the following file failed:
  ‘v05-pRoloc-transfer-learning.Rmd’

Error: Vignette re-building failed.
Execution halted