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This page was generated on 2026-01-01 09:49 -0500 (Thu, 01 Jan 2026).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| teran2 | Linux (Ubuntu 24.04.3 LTS) | x86_64 | R Under development (unstable) (2025-12-18 r89199) -- "Unsuffered Consequences" | 926 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 136/230 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | |||||||
| maftools 2.27.0 (landing page) Anand Mayakonda
| teran2 | Linux (Ubuntu 24.04.3 LTS) / x86_64 | OK | ERROR | skipped | |||||||
|
To the developers/maintainers of the maftools package: - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: maftools |
| Version: 2.27.0 |
| Command: /home/rapidbuild/bbs-3.23-bioc-rapid/R/bin/R CMD build --keep-empty-dirs --no-resave-data maftools |
| StartedAt: 2026-01-01 07:01:14 -0500 (Thu, 01 Jan 2026) |
| EndedAt: 2026-01-01 07:01:41 -0500 (Thu, 01 Jan 2026) |
| EllapsedTime: 27.3 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
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### Running command:
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### /home/rapidbuild/bbs-3.23-bioc-rapid/R/bin/R CMD build --keep-empty-dirs --no-resave-data maftools
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* checking for file ‘maftools/DESCRIPTION’ ... OK
* preparing ‘maftools’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package (it is needed to build vignettes)
* creating vignettes ... ERROR
--- re-building ‘cancer_hotspots.Rmd’ using rmarkdown
--- finished re-building ‘cancer_hotspots.Rmd’
--- re-building ‘cnv_analysis.Rmd’ using rmarkdown
--- finished re-building ‘cnv_analysis.Rmd’
--- re-building ‘maftools.Rmd’ using rmarkdown
Quitting from maftools.Rmd:207-209 [rainfallPlot2]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `data.table::foverlaps()`:
! attempt access index -1/2 in VECTOR_ELT
---
Backtrace:
▆
1. └─maftools::rainfallPlot(...)
2. ├─...[]
3. └─data.table:::`[.data.table`(...)
4. └─base::tryCatch(...)
5. └─base (local) tryCatchList(expr, classes, parentenv, handlers)
6. └─base (local) tryCatchOne(...)
7. └─value[[3L]](cond)
8. └─data.table:::.checkTypos(e, names_x)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'maftools.Rmd' failed with diagnostics:
attempt access index -1/2 in VECTOR_ELT
--- failed re-building ‘maftools.Rmd’
--- re-building ‘oncoplots.Rmd’ using rmarkdown
--- finished re-building ‘oncoplots.Rmd’
SUMMARY: processing the following file failed:
‘maftools.Rmd’
Error: Vignette re-building failed.
Execution halted