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This page was generated on 2025-10-26 08:40 -0400 (Sun, 26 Oct 2025).

HostnameOSArch (*)R versionInstalled pkgs
teran2Linux (Ubuntu 24.04.3 LTS)x86_644.5.1 (2025-06-13) -- "Great Square Root" 900
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Package 128/229HostnameOS / ArchINSTALLBUILDCHECK
karyoploteR 1.35.3  (landing page)
Bernat Gel
Snapshot Date: 2025-10-26 06:00 -0400 (Sun, 26 Oct 2025)
git_url: https://git.bioconductor.org/packages/karyoploteR
git_branch: devel
git_last_commit: e4bd027
git_last_commit_date: 2025-06-21 02:09:56 -0400 (Sat, 21 Jun 2025)
teran2Linux (Ubuntu 24.04.3 LTS) / x86_64  ERROR    ERROR  skipped

BUILD results for karyoploteR on teran2

To the developers/maintainers of the karyoploteR package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: karyoploteR
Version: 1.35.3
Command: /home/rapidbuild/bbs-3.22-bioc-rapid/R/bin/R CMD build --keep-empty-dirs --no-resave-data karyoploteR
StartedAt: 2025-10-26 06:49:04 -0400 (Sun, 26 Oct 2025)
EndedAt: 2025-10-26 06:49:05 -0400 (Sun, 26 Oct 2025)
EllapsedTime: 1.0 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

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### Running command:
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###   /home/rapidbuild/bbs-3.22-bioc-rapid/R/bin/R CMD build --keep-empty-dirs --no-resave-data karyoploteR
###
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* checking for file ‘karyoploteR/DESCRIPTION’ ... OK
* preparing ‘karyoploteR’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
      -----------------------------------
ERROR: dependencies ‘regioneR’, ‘rtracklayer’, ‘biovizBase’, ‘GenomicFeatures’, ‘VariantAnnotation’ are not available for package ‘karyoploteR’
Perhaps try a variation of:
install.packages(c('regioneR', 'rtracklayer', 'biovizBase', 'GenomicFeatures', 'VariantAnnotation'))
* removing ‘/tmp/RtmpqxiUKz/Rinst72bdc2c5a14ed/karyoploteR’
      -----------------------------------
ERROR: package installation failed