| Back to Rapid builds (Linux only) of a subset of BioC 3.23 Report updated every 6 hours |
This page was generated on 2025-12-11 00:54 -0500 (Thu, 11 Dec 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| teran2 | Linux (Ubuntu 24.04.3 LTS) | x86_64 | R Under development (unstable) (2025-10-28 r88973) -- "Unsuffered Consequences" | 926 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 40/230 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | |||||||
| biocViews 1.79.0 (landing page) Bioconductor Package Maintainer
| teran2 | Linux (Ubuntu 24.04.3 LTS) / x86_64 | ERROR | OK | ERROR | |||||||
|
To the developers/maintainers of the biocViews package: - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: biocViews |
| Version: 1.79.0 |
| Command: /home/rapidbuild/bbs-3.23-bioc-rapid/R/bin/R CMD check --install=check:biocViews.install-out.txt --library=/home/rapidbuild/bbs-3.23-bioc-rapid/R/site-library --timings biocViews_1.79.0.tar.gz |
| StartedAt: 2025-12-11 00:40:00 -0500 (Thu, 11 Dec 2025) |
| EndedAt: 2025-12-11 00:40:03 -0500 (Thu, 11 Dec 2025) |
| EllapsedTime: 3.3 seconds |
| RetCode: 1 |
| Status: ERROR |
| CheckDir: biocViews.Rcheck |
| Warnings: NA |
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### Running command:
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### /home/rapidbuild/bbs-3.23-bioc-rapid/R/bin/R CMD check --install=check:biocViews.install-out.txt --library=/home/rapidbuild/bbs-3.23-bioc-rapid/R/site-library --timings biocViews_1.79.0.tar.gz
###
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* using log directory ‘/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/biocViews.Rcheck’
* using R Under development (unstable) (2025-10-28 r88973)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
GNU Fortran (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
* running under: Ubuntu 24.04.3 LTS
* using session charset: UTF-8
* checking for file ‘biocViews/DESCRIPTION’ ... OK
* this is package ‘biocViews’ version ‘1.79.0’
* package encoding: UTF-8
* checking CRAN incoming feasibility ... NOTE
Maintainer: ‘Bioconductor Package Maintainer <maintainer@bioconductor.org>’
Unknown, possibly misspelled, fields in DESCRIPTION:
‘git_url’ ‘git_branch’ ‘git_last_commit’ ‘git_last_commit_date’
The Title field should be in title case. Current version is:
‘Categorized views of R package repositories’
In title case that is:
‘Categorized Views of R Package Repositories’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘biocViews’ can be installed ... ERROR
Installation failed.
See ‘/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/biocViews.Rcheck/00install.out’ for details.
* DONE
Status: 1 ERROR, 1 NOTE
See
‘/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/biocViews.Rcheck/00check.log’
for details.
biocViews.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/rapidbuild/bbs-3.23-bioc-rapid/R/bin/R CMD INSTALL biocViews ### ############################################################################## ############################################################################## * installing to library ‘/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/R/site-library’ * installing *source* package ‘biocViews’ ... ** this is package ‘biocViews’ version ‘1.79.0’ ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help Error : BiocView-class.Rd: Sections \title, and \name must exist and be unique in Rd files ERROR: installing Rd objects failed for package ‘biocViews’ * removing ‘/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/R/site-library/biocViews’ * restoring previous ‘/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/R/site-library/biocViews’