Rapid builds (Linux only) of a subset of BioC 3.23<BR>Report updated every 6 hours

Hostname	OS	Arch (*)	R version	Installed pkgs
teran2	Linux (Ubuntu 24.04.3 LTS)	x86_64	R Under development (unstable) (2025-10-28 r88973) -- "Unsuffered Consequences"	926
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BUILD results for basilisk on teran2

To the developers/maintainers of the basilisk package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: basilisk

Version: 1.23.0

Command: /home/rapidbuild/bbs-3.23-bioc-rapid/R/bin/R CMD build --keep-empty-dirs --no-resave-data basilisk

StartedAt: 2025-12-11 12:26:13 -0500 (Thu, 11 Dec 2025)

EndedAt: 2025-12-11 12:26:24 -0500 (Thu, 11 Dec 2025)

EllapsedTime: 11.3 seconds

RetCode: 1

Status: ERROR

PackageFile: None

PackageFileSize: NA

Command output

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### Running command:
###
###   /home/rapidbuild/bbs-3.23-bioc-rapid/R/bin/R CMD build --keep-empty-dirs --no-resave-data basilisk
###
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* checking for file ‘basilisk/DESCRIPTION’ ... OK
* preparing ‘basilisk’:
* checking DESCRIPTION meta-information ... OK
* installing the package (it is needed to build vignettes)
* creating vignettes ... ERROR
--- re-building ‘motivation.Rmd’ using rmarkdown
Requirement already satisfied: pip in ./basilisk-vignette-test/1.23.0/lib/python3.12/site-packages (25.0.1)
Collecting pip
  Using cached pip-25.3-py3-none-any.whl.metadata (4.7 kB)
Collecting wheel
  Using cached wheel-0.45.1-py3-none-any.whl.metadata (2.3 kB)
Collecting setuptools
  Using cached setuptools-80.9.0-py3-none-any.whl.metadata (6.6 kB)
Using cached pip-25.3-py3-none-any.whl (1.8 MB)
Using cached wheel-0.45.1-py3-none-any.whl (72 kB)
Using cached setuptools-80.9.0-py3-none-any.whl (1.2 MB)
Installing collected packages: wheel, setuptools, pip
  Attempting uninstall: pip
    Found existing installation: pip 25.0.1
    Uninstalling pip-25.0.1:
      Successfully uninstalled pip-25.0.1
  Rolling back uninstall of pip
  Moving to /tmp/RtmpvfXoqO/Rbuild36b708361dcd9b/basilisk/vignettes/basilisk-vignette-test/1.23.0/bin/pip
   from /tmp/pip-uninstall-46r7l06_/pip
  Moving to /tmp/RtmpvfXoqO/Rbuild36b708361dcd9b/basilisk/vignettes/basilisk-vignette-test/1.23.0/bin/pip3
   from /tmp/pip-uninstall-46r7l06_/pip3
  Moving to /tmp/RtmpvfXoqO/Rbuild36b708361dcd9b/basilisk/vignettes/basilisk-vignette-test/1.23.0/bin/pip3.12
   from /tmp/pip-uninstall-46r7l06_/pip3.12
  Moving to /tmp/RtmpvfXoqO/Rbuild36b708361dcd9b/basilisk/vignettes/basilisk-vignette-test/1.23.0/lib/python3.12/site-packages/pip-25.0.1.dist-info/
   from /tmp/RtmpvfXoqO/Rbuild36b708361dcd9b/basilisk/vignettes/basilisk-vignette-test/1.23.0/lib/python3.12/site-packages/~ip-25.0.1.dist-info
  Moving to /tmp/RtmpvfXoqO/Rbuild36b708361dcd9b/basilisk/vignettes/basilisk-vignette-test/1.23.0/lib/python3.12/site-packages/pip/
   from /tmp/RtmpvfXoqO/Rbuild36b708361dcd9b/basilisk/vignettes/basilisk-vignette-test/1.23.0/lib/python3.12/site-packages/~ip
ERROR: Could not install packages due to an OSError: [Errno 28] No space left on device


[notice] A new release of pip is available: 25.0.1 -> 25.3
[notice] To update, run: /tmp/RtmpvfXoqO/Rbuild36b708361dcd9b/basilisk/vignettes/basilisk-vignette-test/1.23.0/bin/python -m pip install --upgrade pip

Quitting from motivation.Rmd:251-256 [unnamed-chunk-4]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error:
! Error installing package(s): 'pip', 'wheel', 'setuptools'
---
Backtrace:
    ▆
 1. └─basilisk::createLocalBasiliskEnv(...)
 2.   └─basilisk::setupBasiliskEnv(envpath, ...)
 3.     └─reticulate::virtualenv_create(...)
 4.       └─reticulate:::pip_install(...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'motivation.Rmd' failed with diagnostics:
Error installing package(s): 'pip', 'wheel', 'setuptools'
--- failed re-building ‘motivation.Rmd’

SUMMARY: processing the following file failed:
  ‘motivation.Rmd’

Error: Vignette re-building failed.
Execution halted