Rapid builds (Linux only) of a subset of BioC 3.23<BR>Report updated every 6 hours

Hostname	OS	Arch (*)	R version	Installed pkgs
teran2	Linux (Ubuntu 24.04.3 LTS)	x86_64	R Under development (unstable) (2025-10-28 r88973) -- "Unsuffered Consequences"	917
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BUILD results for alabaster.se on teran2

To the developers/maintainers of the alabaster.se package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: alabaster.se

Version: 1.11.0

Command: /home/rapidbuild/bbs-3.23-bioc-rapid/R/bin/R CMD build --keep-empty-dirs --no-resave-data alabaster.se

StartedAt: 2025-11-02 06:27:29 -0500 (Sun, 02 Nov 2025)

EndedAt: 2025-11-02 06:27:55 -0500 (Sun, 02 Nov 2025)

EllapsedTime: 26.6 seconds

RetCode: 1

Status: ERROR

PackageFile: None

PackageFileSize: NA

Command output

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### Running command:
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###   /home/rapidbuild/bbs-3.23-bioc-rapid/R/bin/R CMD build --keep-empty-dirs --no-resave-data alabaster.se
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* checking for file ‘alabaster.se/DESCRIPTION’ ... OK
* preparing ‘alabaster.se’:
* checking DESCRIPTION meta-information ... OK
* installing the package (it is needed to build vignettes)
* creating vignettes ... ERROR
--- re-building ‘userguide.Rmd’ using rmarkdown

Quitting from userguide.Rmd:63-66 [unnamed-chunk-3]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `h5_read_attribute()`:
! argument "bit64conversion" is missing, with no default
---
Backtrace:
    ▆
 1. └─alabaster.base::readObject(tmp)
 2.   └─alabaster.se (local) meth(path, metadata = metadata, ...)
 3.     └─alabaster.se::readSummarizedExperiment(...)
 4.       └─alabaster.base::altReadObject(...)
 5.         └─alabaster.base (local) FUN(path, ...)
 6.           └─alabaster.matrix (local) meth(path, metadata = metadata, ...)
 7.             └─(function() {...
 8.               └─alabaster.base::h5_read_attribute(ghandle, "type")
 9.                 └─rhdf5::H5Aread(ahandle, bit64conversion = bit64conversion)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'userguide.Rmd' failed with diagnostics:
argument "bit64conversion" is missing, with no default
--- failed re-building ‘userguide.Rmd’

SUMMARY: processing the following file failed:
  ‘userguide.Rmd’

Error: Vignette re-building failed.
Execution halted