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This page was generated on 2025-10-29 08:43 -0400 (Wed, 29 Oct 2025).

HostnameOSArch (*)R versionInstalled pkgs
teran2Linux (Ubuntu 24.04.3 LTS)x86_644.5.1 (2025-06-13) -- "Great Square Root" 901
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Package 191/229HostnameOS / ArchINSTALLBUILDCHECK
S4Vectors 0.47.6  (landing page)
Hervé Pagès
Snapshot Date: 2025-10-29 06:00 -0400 (Wed, 29 Oct 2025)
git_url: https://git.bioconductor.org/packages/S4Vectors
git_branch: devel
git_last_commit: 819c0a0
git_last_commit_date: 2025-10-24 14:54:35 -0400 (Fri, 24 Oct 2025)
teran2Linux (Ubuntu 24.04.3 LTS) / x86_64  OK    ERROR  skipped

BUILD results for S4Vectors on teran2

To the developers/maintainers of the S4Vectors package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: S4Vectors
Version: 0.47.6
Command: /home/rapidbuild/bbs-3.22-bioc-rapid/R/bin/R CMD build --keep-empty-dirs --no-resave-data S4Vectors
StartedAt: 2025-10-29 07:07:47 -0400 (Wed, 29 Oct 2025)
EndedAt: 2025-10-29 07:08:20 -0400 (Wed, 29 Oct 2025)
EllapsedTime: 33.3 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
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### Running command:
###
###   /home/rapidbuild/bbs-3.22-bioc-rapid/R/bin/R CMD build --keep-empty-dirs --no-resave-data S4Vectors
###
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* checking for file ‘S4Vectors/DESCRIPTION’ ... OK
* preparing ‘S4Vectors’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘RleTricks.Rmd’ using rmarkdown
--- finished re-building ‘RleTricks.Rmd’

--- re-building ‘S4QuickOverview.Rmd’ using rmarkdown

Quitting from S4QuickOverview.Rmd:19-27 [setup]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `library()`:
! there is no package called 'ShortRead'
---
Backtrace:
    ▆
 1. ├─base::suppressPackageStartupMessages(...)
 2. │ └─base::withCallingHandlers(expr, packageStartupMessage = function(c) tryInvokeRestart("muffleMessage"))
 3. └─base::library(ShortRead)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'S4QuickOverview.Rmd' failed with diagnostics:
there is no package called 'ShortRead'
--- failed re-building ‘S4QuickOverview.Rmd’

--- re-building ‘S4VectorsOverview.Rmd’ using rmarkdown
--- finished re-building ‘S4VectorsOverview.Rmd’

SUMMARY: processing the following file failed:
  ‘S4QuickOverview.Rmd’

Error: Vignette re-building failed.
Execution halted