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This page was generated on 2025-12-12 01:01 -0500 (Fri, 12 Dec 2025).

HostnameOSArch (*)R versionInstalled pkgs
teran2Linux (Ubuntu 24.04.3 LTS)x86_64R Under development (unstable) (2025-10-28 r88973) -- "Unsuffered Consequences" 926
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Package 182/230HostnameOS / ArchINSTALLBUILDCHECK
Rhtslib 3.7.0  (landing page)
Hervé Pagès
Snapshot Date: 2025-12-12 00:00 -0500 (Fri, 12 Dec 2025)
git_url: https://git.bioconductor.org/packages/Rhtslib
git_branch: devel
git_last_commit: 0dcad2a
git_last_commit_date: 2025-10-29 14:52:40 -0500 (Wed, 29 Oct 2025)
teran2Linux (Ubuntu 24.04.3 LTS) / x86_64  OK    ERROR  skipped


BUILD results for Rhtslib on teran2

To the developers/maintainers of the Rhtslib package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: Rhtslib
Version: 3.7.0
Command: /home/rapidbuild/bbs-3.23-bioc-rapid/R/bin/R CMD build --keep-empty-dirs --no-resave-data Rhtslib
StartedAt: 2025-12-12 00:37:49 -0500 (Fri, 12 Dec 2025)
EndedAt: 2025-12-12 00:37:50 -0500 (Fri, 12 Dec 2025)
EllapsedTime: 1.3 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/rapidbuild/bbs-3.23-bioc-rapid/R/bin/R CMD build --keep-empty-dirs --no-resave-data Rhtslib
###
##############################################################################
##############################################################################


* checking for file ‘Rhtslib/DESCRIPTION’ ... OK
cp: error writing '/tmp/Rtmp9iHgVQ/Rbuild3f721f39ed1d7a/Rhtslib/src/htslib-1.18/sam.o': No space left on device
cp: error writing '/tmp/Rtmp9iHgVQ/Rbuild3f721f39ed1d7a/Rhtslib/src/htslib-1.18/sam_mods.o': No space left on device
cp: error writing '/tmp/Rtmp9iHgVQ/Rbuild3f721f39ed1d7a/Rhtslib/src/htslib-1.18/textutils.o': No space left on device
cp: error writing '/tmp/Rtmp9iHgVQ/Rbuild3f721f39ed1d7a/Rhtslib/src/htslib-1.18/thread_pool.o': No space left on device
cp: error writing '/tmp/Rtmp9iHgVQ/Rbuild3f721f39ed1d7a/Rhtslib/src/htslib-1.18/vcf.o': No space left on device
cp: error writing '/tmp/Rtmp9iHgVQ/Rbuild3f721f39ed1d7a/Rhtslib/src/htslib-1.18/vcfutils.o': No space left on device
cp: error writing '/tmp/Rtmp9iHgVQ/Rbuild3f721f39ed1d7a/Rhtslib/src/htslib-1.18/libhts.a': No space left on device
cp: error writing '/tmp/Rtmp9iHgVQ/Rbuild3f721f39ed1d7a/Rhtslib/src/htslib-1.18/kstring.pico': No space left on device
cp: error writing '/tmp/Rtmp9iHgVQ/Rbuild3f721f39ed1d7a/Rhtslib/src/htslib-1.18/bcf_sr_sort.pico': No space left on device
cp: error writing '/tmp/Rtmp9iHgVQ/Rbuild3f721f39ed1d7a/Rhtslib/src/htslib-1.18/errmod.pico': No space left on device
cp: error writing '/tmp/Rtmp9iHgVQ/Rbuild3f721f39ed1d7a/Rhtslib/src/htslib-1.18/faidx.pico': No space left on device
cp: error writing '/tmp/Rtmp9iHgVQ/Rbuild3f721f39ed1d7a/Rhtslib/src/htslib-1.18/hfile.pico': No space left on device
cp: error writing '/tmp/Rtmp9iHgVQ/Rbuild3f721f39ed1d7a/Rhtslib/src/htslib-1.18/hts_expr.pico': No space left on device
cp: error writing '/tmp/Rtmp9iHgVQ/Rbuild3f721f39ed1d7a/Rhtslib/src/htslib-1.18/hts_os.pico': No space left on device
cp: error writing '/tmp/Rtmp9iHgVQ/Rbuild3f721f39ed1d7a/Rhtslib/src/htslib-1.18/multipart.pico': No space left on device
cp: error writing '/tmp/Rtmp9iHgVQ/Rbuild3f721f39ed1d7a/Rhtslib/src/htslib-1.18/region.pico': No space left on device
cp: error writing '/tmp/Rtmp9iHgVQ/Rbuild3f721f39ed1d7a/Rhtslib/src/htslib-1.18/sam.pico': No space left on device
cp: error writing '/tmp/Rtmp9iHgVQ/Rbuild3f721f39ed1d7a/Rhtslib/src/htslib-1.18/sam_mods.pico': No space left on device
cp: error writing '/tmp/Rtmp9iHgVQ/Rbuild3f721f39ed1d7a/Rhtslib/src/htslib-1.18/synced_bcf_reader.pico': No space left on device
cp: error writing '/tmp/Rtmp9iHgVQ/Rbuild3f721f39ed1d7a/Rhtslib/src/htslib-1.18/vcf_sweep.pico': No space left on device
cp: error writing '/tmp/Rtmp9iHgVQ/Rbuild3f721f39ed1d7a/Rhtslib/src/htslib-1.18/vcf.pico': No space left on device
cp: error writing '/tmp/Rtmp9iHgVQ/Rbuild3f721f39ed1d7a/Rhtslib/src/htslib-1.18/libhts.so': No space left on device
cp: error writing '/tmp/Rtmp9iHgVQ/Rbuild3f721f39ed1d7a/Rhtslib/src/htslib-1.18/libhts.so.3': No space left on device
cp: error writing '/tmp/Rtmp9iHgVQ/Rbuild3f721f39ed1d7a/Rhtslib/src/htslib-1.18/htslib.pc.tmp': No space left on device
cp: error writing '/tmp/Rtmp9iHgVQ/Rbuild3f721f39ed1d7a/Rhtslib/src/htslib-1.18/htslib_static.mk': No space left on device
cp: error writing '/tmp/Rtmp9iHgVQ/Rbuild3f721f39ed1d7a/Rhtslib/src/htslib-1.18/htslib-uninstalled.pc': No space left on device
cp: cannot create directory '/tmp/Rtmp9iHgVQ/Rbuild3f721f39ed1d7a/Rhtslib/src/htslib-1.18/cram': No space left on device
cp: cannot create directory '/tmp/Rtmp9iHgVQ/Rbuild3f721f39ed1d7a/Rhtslib/src/htslib-1.18/htscodecs': No space left on device
cp: cannot create directory '/tmp/Rtmp9iHgVQ/Rbuild3f721f39ed1d7a/Rhtslib/src/htslib-1.18/htslib': No space left on device
cp: cannot create directory '/tmp/Rtmp9iHgVQ/Rbuild3f721f39ed1d7a/Rhtslib/src/htslib-1.18/m4': No space left on device
cp: cannot create directory '/tmp/Rtmp9iHgVQ/Rbuild3f721f39ed1d7a/Rhtslib/src/htslib-1.18/os': No space left on device
cp: cannot create directory '/tmp/Rtmp9iHgVQ/Rbuild3f721f39ed1d7a/Rhtslib/src/htslib-1.18/samples': No space left on device
cp: cannot create directory '/tmp/Rtmp9iHgVQ/Rbuild3f721f39ed1d7a/Rhtslib/src/htslib-1.18/test': No space left on device
cp: error writing '/tmp/Rtmp9iHgVQ/Rbuild3f721f39ed1d7a/Rhtslib/src/htslib-1.18/INSTALL': No space left on device
cp: error writing '/tmp/Rtmp9iHgVQ/Rbuild3f721f39ed1d7a/Rhtslib/src/htslib-1.18/LICENSE': No space left on device
cp: error writing '/tmp/Rtmp9iHgVQ/Rbuild3f721f39ed1d7a/Rhtslib/src/htslib-1.18/Makefile': No space left on device
cp: error writing '/tmp/Rtmp9iHgVQ/Rbuild3f721f39ed1d7a/Rhtslib/src/htslib-1.18/Makefile.Rhtslib': No space left on device
cp: error writing '/tmp/Rtmp9iHgVQ/Rbuild3f721f39ed1d7a/Rhtslib/src/htslib-1.18/Makefile.Rhtslib.win': No space left on device
cp: error writing '/tmp/Rtmp9iHgVQ/Rbuild3f721f39ed1d7a/Rhtslib/src/htslib-1.18/NEWS': No space left on device
cp: error writing '/tmp/Rtmp9iHgVQ/Rbuild3f721f39ed1d7a/Rhtslib/src/htslib-1.18/README': No space left on device
cp: error writing '/tmp/Rtmp9iHgVQ/Rbuild3f721f39ed1d7a/Rhtslib/src/htslib-1.18/README.large_positions.md': No space left on device
cp: error writing '/tmp/Rtmp9iHgVQ/Rbuild3f721f39ed1d7a/Rhtslib/src/htslib-1.18/bcf_sr_sort.c': No space left on device
cp: error writing '/tmp/Rtmp9iHgVQ/Rbuild3f721f39ed1d7a/Rhtslib/src/htslib-1.18/bcf_sr_sort.h': No space left on device
cp: error writing '/tmp/Rtmp9iHgVQ/Rbuild3f721f39ed1d7a/Rhtslib/src/htslib-1.18/bgzf.c': No space left on device
cp: error writing '/tmp/Rtmp9iHgVQ/Rbuild3f721f39ed1d7a/Rhtslib/src/htslib-1.18/bgzip.1': No space left on device
cp: error writing '/tmp/Rtmp9iHgVQ/Rbuild3f721f39ed1d7a/Rhtslib/src/htslib-1.18/bgzip.c': No space left on device
cp: error writing '/tmp/Rtmp9iHgVQ/Rbuild3f721f39ed1d7a/Rhtslib/src/htslib-1.18/builddir_vars.mk.in': No space left on device
cp: error writing '/tmp/Rtmp9iHgVQ/Rbuild3f721f39ed1d7a/Rhtslib/src/htslib-1.18/config.h.in': No space left on device
cp: error writing '/tmp/Rtmp9iHgVQ/Rbuild3f721f39ed1d7a/Rhtslib/src/htslib-1.18/config.mk.in': No space left on device
cp: error writing '/tmp/Rtmp9iHgVQ/Rbuild3f721f39ed1d7a/Rhtslib/src/htslib-1.18/configure': No space left on device
cp: error writing '/tmp/Rtmp9iHgVQ/Rbuild3f721f39ed1d7a/Rhtslib/src/htslib-1.18/configure.ac': No space left on device
cp: error writing '/tmp/Rtmp9iHgVQ/Rbuild3f721f39ed1d7a/Rhtslib/src/htslib-1.18/errmod.c': No space left on device
cp: error writing '/tmp/Rtmp9iHgVQ/Rbuild3f721f39ed1d7a/Rhtslib/src/htslib-1.18/faidx.5': No space left on device
cp: error writing '/tmp/Rtmp9iHgVQ/Rbuild3f721f39ed1d7a/Rhtslib/src/htslib-1.18/faidx.c': No space left on device
cp: error writing '/tmp/Rtmp9iHgVQ/Rbuild3f721f39ed1d7a/Rhtslib/src/htslib-1.18/header.c': No space left on device
cp: error writing '/tmp/Rtmp9iHgVQ/Rbuild3f721f39ed1d7a/Rhtslib/src/htslib-1.18/header.h': No space left on device
cp: error writing '/tmp/Rtmp9iHgVQ/Rbuild3f721f39ed1d7a/Rhtslib/src/htslib-1.18/hfile.c': No space left on device
cp: error writing '/tmp/Rtmp9iHgVQ/Rbuild3f721f39ed1d7a/Rhtslib/src/htslib-1.18/hfile_gcs.c': No space left on device
cp: error writing '/tmp/Rtmp9iHgVQ/Rbuild3f721f39ed1d7a/Rhtslib/src/htslib-1.18/hfile_internal.h': No space left on device
cp: error writing '/tmp/Rtmp9iHgVQ/Rbuild3f721f39ed1d7a/Rhtslib/src/htslib-1.18/hfile_libcurl.c': No space left on device
cp: error writing '/tmp/Rtmp9iHgVQ/Rbuild3f721f39ed1d7a/Rhtslib/src/htslib-1.18/hfile_s3.c': No space left on device
cp: error writing '/tmp/Rtmp9iHgVQ/Rbuild3f721f39ed1d7a/Rhtslib/src/htslib-1.18/hfile_s3_write.c': No space left on device
cp: error writing '/tmp/Rtmp9iHgVQ/Rbuild3f721f39ed1d7a/Rhtslib/src/htslib-1.18/hts.c': No space left on device
cp: error writing '/tmp/Rtmp9iHgVQ/Rbuild3f721f39ed1d7a/Rhtslib/src/htslib-1.18/hts_expr.c': No space left on device
cp: error writing '/tmp/Rtmp9iHgVQ/Rbuild3f721f39ed1d7a/Rhtslib/src/htslib-1.18/hts_internal.h': No space left on device
cp: error writing '/tmp/Rtmp9iHgVQ/Rbuild3f721f39ed1d7a/Rhtslib/src/htslib-1.18/hts_os.c': No space left on device
cp: error writing '/tmp/Rtmp9iHgVQ/Rbuild3f721f39ed1d7a/Rhtslib/src/htslib-1.18/hts_probe_cc.sh': No space left on device
cp: error writing '/tmp/Rtmp9iHgVQ/Rbuild3f721f39ed1d7a/Rhtslib/src/htslib-1.18/hts_time_funcs.h': No space left on device
cp: error writing '/tmp/Rtmp9iHgVQ/Rbuild3f721f39ed1d7a/Rhtslib/src/htslib-1.18/htscodecs_bundled.mk': No space left on device
cp: error writing '/tmp/Rtmp9iHgVQ/Rbuild3f721f39ed1d7a/Rhtslib/src/htslib-1.18/htscodecs_external.mk': No space left on device
cp: error writing '/tmp/Rtmp9iHgVQ/Rbuild3f721f39ed1d7a/Rhtslib/src/htslib-1.18/htsfile.1': No space left on device
cp: error writing '/tmp/Rtmp9iHgVQ/Rbuild3f721f39ed1d7a/Rhtslib/src/htslib-1.18/htsfile.c': No space left on device
cp: error writing '/tmp/Rtmp9iHgVQ/Rbuild3f721f39ed1d7a/Rhtslib/src/htslib-1.18/htslib-s3-plugin.7': No space left on device
cp: error writing '/tmp/Rtmp9iHgVQ/Rbuild3f721f39ed1d7a/Rhtslib/src/htslib-1.18/htslib.map': No space left on device
cp: error writing '/tmp/Rtmp9iHgVQ/Rbuild3f721f39ed1d7a/Rhtslib/src/htslib-1.18/htslib.mk': No space left on device
cp: error writing '/tmp/Rtmp9iHgVQ/Rbuild3f721f39ed1d7a/Rhtslib/src/htslib-1.18/htslib.pc.in': No space left on device
cp: error writing '/tmp/Rtmp9iHgVQ/Rbuild3f721f39ed1d7a/Rhtslib/src/htslib-1.18/htslib_vars.mk': No space left on device
cp: error writing '/tmp/Rtmp9iHgVQ/Rbuild3f721f39ed1d7a/Rhtslib/src/htslib-1.18/kfunc.c': No space left on device
cp: error writing '/tmp/Rtmp9iHgVQ/Rbuild3f721f39ed1d7a/Rhtslib/src/htslib-1.18/kstring.c': No space left on device
cp: error writing '/tmp/Rtmp9iHgVQ/Rbuild3f721f39ed1d7a/Rhtslib/src/htslib-1.18/md5.c': No space left on device
cp: error writing '/tmp/Rtmp9iHgVQ/Rbuild3f721f39ed1d7a/Rhtslib/src/htslib-1.18/multipart.c': No space left on device
cp: error writing '/tmp/Rtmp9iHgVQ/Rbuild3f721f39ed1d7a/Rhtslib/src/htslib-1.18/plugin.c': No space left on device
cp: error writing '/tmp/Rtmp9iHgVQ/Rbuild3f721f39ed1d7a/Rhtslib/src/htslib-1.18/probaln.c': No space left on device
cp: error writing '/tmp/Rtmp9iHgVQ/Rbuild3f721f39ed1d7a/Rhtslib/src/htslib-1.18/realn.c': No space left on device
cp: error writing '/tmp/Rtmp9iHgVQ/Rbuild3f721f39ed1d7a/Rhtslib/src/htslib-1.18/regidx.c': No space left on device
cp: error writing '/tmp/Rtmp9iHgVQ/Rbuild3f721f39ed1d7a/Rhtslib/src/htslib-1.18/region.c': No space left on device
cp: error writing '/tmp/Rtmp9iHgVQ/Rbuild3f721f39ed1d7a/Rhtslib/src/htslib-1.18/sam.5': No space left on device
cp: error writing '/tmp/Rtmp9iHgVQ/Rbuild3f721f39ed1d7a/Rhtslib/src/htslib-1.18/sam.c': No space left on device
cp: error writing '/tmp/Rtmp9iHgVQ/Rbuild3f721f39ed1d7a/Rhtslib/src/htslib-1.18/sam_internal.h': No space left on device
cp: error writing '/tmp/Rtmp9iHgVQ/Rbuild3f721f39ed1d7a/Rhtslib/src/htslib-1.18/sam_mods.c': No space left on device
cp: error writing '/tmp/Rtmp9iHgVQ/Rbuild3f721f39ed1d7a/Rhtslib/src/htslib-1.18/synced_bcf_reader.c': No space left on device
cp: error writing '/tmp/Rtmp9iHgVQ/Rbuild3f721f39ed1d7a/Rhtslib/src/htslib-1.18/tabix.1': No space left on device
cp: error writing '/tmp/Rtmp9iHgVQ/Rbuild3f721f39ed1d7a/Rhtslib/src/htslib-1.18/tabix.c': No space left on device
cp: error writing '/tmp/Rtmp9iHgVQ/Rbuild3f721f39ed1d7a/Rhtslib/src/htslib-1.18/tbx.c': No space left on device
cp: error writing '/tmp/Rtmp9iHgVQ/Rbuild3f721f39ed1d7a/Rhtslib/src/htslib-1.18/textutils.c': No space left on device
cp: error writing '/tmp/Rtmp9iHgVQ/Rbuild3f721f39ed1d7a/Rhtslib/src/htslib-1.18/textutils_internal.h': No space left on device
cp: error writing '/tmp/Rtmp9iHgVQ/Rbuild3f721f39ed1d7a/Rhtslib/src/htslib-1.18/thread_pool.c': No space left on device
cp: error writing '/tmp/Rtmp9iHgVQ/Rbuild3f721f39ed1d7a/Rhtslib/src/htslib-1.18/thread_pool_internal.h': No space left on device
cp: error writing '/tmp/Rtmp9iHgVQ/Rbuild3f721f39ed1d7a/Rhtslib/src/htslib-1.18/vcf.5': No space left on device
cp: error writing '/tmp/Rtmp9iHgVQ/Rbuild3f721f39ed1d7a/Rhtslib/src/htslib-1.18/vcf.c': No space left on device
cp: error writing '/tmp/Rtmp9iHgVQ/Rbuild3f721f39ed1d7a/Rhtslib/src/htslib-1.18/vcf_sweep.c': No space left on device
cp: error writing '/tmp/Rtmp9iHgVQ/Rbuild3f721f39ed1d7a/Rhtslib/src/htslib-1.18/vcfutils.c': No space left on device
cp: error writing '/tmp/Rtmp9iHgVQ/Rbuild3f721f39ed1d7a/Rhtslib/src/htslib-1.18/version.sh': No space left on device
cp: error writing '/tmp/Rtmp9iHgVQ/Rbuild3f721f39ed1d7a/Rhtslib/src/Makevars': No space left on device
cp: error writing '/tmp/Rtmp9iHgVQ/Rbuild3f721f39ed1d7a/Rhtslib/src/Makevars.common': No space left on device
cp: error writing '/tmp/Rtmp9iHgVQ/Rbuild3f721f39ed1d7a/Rhtslib/src/Makevars.win': No space left on device
cp: error writing '/tmp/Rtmp9iHgVQ/Rbuild3f721f39ed1d7a/Rhtslib/src/R_init_Rhtslib.c': No space left on device
cp: cannot create directory '/tmp/Rtmp9iHgVQ/Rbuild3f721f39ed1d7a/Rhtslib/vignettes': No space left on device
 ERROR
copying to build directory failed