| Back to Rapid builds (Linux only) of a subset of BioC 3.23 Report updated every 6 hours |
This page was generated on 2025-12-12 01:01 -0500 (Fri, 12 Dec 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| teran2 | Linux (Ubuntu 24.04.3 LTS) | x86_64 | R Under development (unstable) (2025-10-28 r88973) -- "Unsuffered Consequences" | 926 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 182/230 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | |||||||
| Rhtslib 3.7.0 (landing page) Hervé Pagès
| teran2 | Linux (Ubuntu 24.04.3 LTS) / x86_64 | OK | ERROR | skipped | |||||||
|
To the developers/maintainers of the Rhtslib package: - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: Rhtslib |
| Version: 3.7.0 |
| Command: /home/rapidbuild/bbs-3.23-bioc-rapid/R/bin/R CMD build --keep-empty-dirs --no-resave-data Rhtslib |
| StartedAt: 2025-12-12 00:37:49 -0500 (Fri, 12 Dec 2025) |
| EndedAt: 2025-12-12 00:37:50 -0500 (Fri, 12 Dec 2025) |
| EllapsedTime: 1.3 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/rapidbuild/bbs-3.23-bioc-rapid/R/bin/R CMD build --keep-empty-dirs --no-resave-data Rhtslib ### ############################################################################## ############################################################################## * checking for file ‘Rhtslib/DESCRIPTION’ ... OK cp: error writing '/tmp/Rtmp9iHgVQ/Rbuild3f721f39ed1d7a/Rhtslib/src/htslib-1.18/sam.o': No space left on device cp: error writing '/tmp/Rtmp9iHgVQ/Rbuild3f721f39ed1d7a/Rhtslib/src/htslib-1.18/sam_mods.o': No space left on device cp: error writing '/tmp/Rtmp9iHgVQ/Rbuild3f721f39ed1d7a/Rhtslib/src/htslib-1.18/textutils.o': No space left on device cp: error writing '/tmp/Rtmp9iHgVQ/Rbuild3f721f39ed1d7a/Rhtslib/src/htslib-1.18/thread_pool.o': No space left on device cp: error writing '/tmp/Rtmp9iHgVQ/Rbuild3f721f39ed1d7a/Rhtslib/src/htslib-1.18/vcf.o': No space left on device cp: error writing '/tmp/Rtmp9iHgVQ/Rbuild3f721f39ed1d7a/Rhtslib/src/htslib-1.18/vcfutils.o': No space left on device cp: error writing '/tmp/Rtmp9iHgVQ/Rbuild3f721f39ed1d7a/Rhtslib/src/htslib-1.18/libhts.a': No space left on device cp: error writing '/tmp/Rtmp9iHgVQ/Rbuild3f721f39ed1d7a/Rhtslib/src/htslib-1.18/kstring.pico': No space left on device cp: error writing '/tmp/Rtmp9iHgVQ/Rbuild3f721f39ed1d7a/Rhtslib/src/htslib-1.18/bcf_sr_sort.pico': No space left on device cp: error writing '/tmp/Rtmp9iHgVQ/Rbuild3f721f39ed1d7a/Rhtslib/src/htslib-1.18/errmod.pico': No space left on device cp: error writing '/tmp/Rtmp9iHgVQ/Rbuild3f721f39ed1d7a/Rhtslib/src/htslib-1.18/faidx.pico': No space left on device cp: error writing '/tmp/Rtmp9iHgVQ/Rbuild3f721f39ed1d7a/Rhtslib/src/htslib-1.18/hfile.pico': No space left on device cp: error writing '/tmp/Rtmp9iHgVQ/Rbuild3f721f39ed1d7a/Rhtslib/src/htslib-1.18/hts_expr.pico': No space left on device cp: error writing '/tmp/Rtmp9iHgVQ/Rbuild3f721f39ed1d7a/Rhtslib/src/htslib-1.18/hts_os.pico': No space left on device cp: error writing '/tmp/Rtmp9iHgVQ/Rbuild3f721f39ed1d7a/Rhtslib/src/htslib-1.18/multipart.pico': No space left on device cp: error writing '/tmp/Rtmp9iHgVQ/Rbuild3f721f39ed1d7a/Rhtslib/src/htslib-1.18/region.pico': No space left on device cp: error writing '/tmp/Rtmp9iHgVQ/Rbuild3f721f39ed1d7a/Rhtslib/src/htslib-1.18/sam.pico': No space left on device cp: error writing '/tmp/Rtmp9iHgVQ/Rbuild3f721f39ed1d7a/Rhtslib/src/htslib-1.18/sam_mods.pico': No space left on device cp: error writing '/tmp/Rtmp9iHgVQ/Rbuild3f721f39ed1d7a/Rhtslib/src/htslib-1.18/synced_bcf_reader.pico': No space left on device cp: error writing '/tmp/Rtmp9iHgVQ/Rbuild3f721f39ed1d7a/Rhtslib/src/htslib-1.18/vcf_sweep.pico': No space left on device cp: error writing '/tmp/Rtmp9iHgVQ/Rbuild3f721f39ed1d7a/Rhtslib/src/htslib-1.18/vcf.pico': No space left on device cp: error writing '/tmp/Rtmp9iHgVQ/Rbuild3f721f39ed1d7a/Rhtslib/src/htslib-1.18/libhts.so': No space left on device cp: error writing '/tmp/Rtmp9iHgVQ/Rbuild3f721f39ed1d7a/Rhtslib/src/htslib-1.18/libhts.so.3': No space left on device cp: error writing '/tmp/Rtmp9iHgVQ/Rbuild3f721f39ed1d7a/Rhtslib/src/htslib-1.18/htslib.pc.tmp': No space left on device cp: error writing '/tmp/Rtmp9iHgVQ/Rbuild3f721f39ed1d7a/Rhtslib/src/htslib-1.18/htslib_static.mk': No space left on device cp: error writing '/tmp/Rtmp9iHgVQ/Rbuild3f721f39ed1d7a/Rhtslib/src/htslib-1.18/htslib-uninstalled.pc': No space left on device cp: cannot create directory '/tmp/Rtmp9iHgVQ/Rbuild3f721f39ed1d7a/Rhtslib/src/htslib-1.18/cram': No space left on device cp: cannot create directory '/tmp/Rtmp9iHgVQ/Rbuild3f721f39ed1d7a/Rhtslib/src/htslib-1.18/htscodecs': No space left on device cp: cannot create directory '/tmp/Rtmp9iHgVQ/Rbuild3f721f39ed1d7a/Rhtslib/src/htslib-1.18/htslib': No space left on device cp: cannot create directory '/tmp/Rtmp9iHgVQ/Rbuild3f721f39ed1d7a/Rhtslib/src/htslib-1.18/m4': No space left on device cp: cannot create directory '/tmp/Rtmp9iHgVQ/Rbuild3f721f39ed1d7a/Rhtslib/src/htslib-1.18/os': No space left on device cp: cannot create directory '/tmp/Rtmp9iHgVQ/Rbuild3f721f39ed1d7a/Rhtslib/src/htslib-1.18/samples': No space left on device cp: cannot create directory '/tmp/Rtmp9iHgVQ/Rbuild3f721f39ed1d7a/Rhtslib/src/htslib-1.18/test': No space left on device cp: error writing '/tmp/Rtmp9iHgVQ/Rbuild3f721f39ed1d7a/Rhtslib/src/htslib-1.18/INSTALL': No space left on device cp: error writing '/tmp/Rtmp9iHgVQ/Rbuild3f721f39ed1d7a/Rhtslib/src/htslib-1.18/LICENSE': No space left on device cp: error writing '/tmp/Rtmp9iHgVQ/Rbuild3f721f39ed1d7a/Rhtslib/src/htslib-1.18/Makefile': No space left on device cp: error writing '/tmp/Rtmp9iHgVQ/Rbuild3f721f39ed1d7a/Rhtslib/src/htslib-1.18/Makefile.Rhtslib': No space left on device cp: error writing '/tmp/Rtmp9iHgVQ/Rbuild3f721f39ed1d7a/Rhtslib/src/htslib-1.18/Makefile.Rhtslib.win': No space left on device cp: error writing '/tmp/Rtmp9iHgVQ/Rbuild3f721f39ed1d7a/Rhtslib/src/htslib-1.18/NEWS': No space left on device cp: error writing '/tmp/Rtmp9iHgVQ/Rbuild3f721f39ed1d7a/Rhtslib/src/htslib-1.18/README': No space left on device cp: error writing '/tmp/Rtmp9iHgVQ/Rbuild3f721f39ed1d7a/Rhtslib/src/htslib-1.18/README.large_positions.md': No space left on device cp: error writing '/tmp/Rtmp9iHgVQ/Rbuild3f721f39ed1d7a/Rhtslib/src/htslib-1.18/bcf_sr_sort.c': No space left on device cp: error writing '/tmp/Rtmp9iHgVQ/Rbuild3f721f39ed1d7a/Rhtslib/src/htslib-1.18/bcf_sr_sort.h': No space left on device cp: error writing '/tmp/Rtmp9iHgVQ/Rbuild3f721f39ed1d7a/Rhtslib/src/htslib-1.18/bgzf.c': No space left on device cp: error writing '/tmp/Rtmp9iHgVQ/Rbuild3f721f39ed1d7a/Rhtslib/src/htslib-1.18/bgzip.1': No space left on device cp: error writing '/tmp/Rtmp9iHgVQ/Rbuild3f721f39ed1d7a/Rhtslib/src/htslib-1.18/bgzip.c': No space left on device cp: error writing '/tmp/Rtmp9iHgVQ/Rbuild3f721f39ed1d7a/Rhtslib/src/htslib-1.18/builddir_vars.mk.in': No space left on device cp: error writing '/tmp/Rtmp9iHgVQ/Rbuild3f721f39ed1d7a/Rhtslib/src/htslib-1.18/config.h.in': No space left on device cp: error writing '/tmp/Rtmp9iHgVQ/Rbuild3f721f39ed1d7a/Rhtslib/src/htslib-1.18/config.mk.in': No space left on device cp: error writing '/tmp/Rtmp9iHgVQ/Rbuild3f721f39ed1d7a/Rhtslib/src/htslib-1.18/configure': No space left on device cp: error writing '/tmp/Rtmp9iHgVQ/Rbuild3f721f39ed1d7a/Rhtslib/src/htslib-1.18/configure.ac': No space left on device cp: error writing '/tmp/Rtmp9iHgVQ/Rbuild3f721f39ed1d7a/Rhtslib/src/htslib-1.18/errmod.c': No space left on device cp: error writing '/tmp/Rtmp9iHgVQ/Rbuild3f721f39ed1d7a/Rhtslib/src/htslib-1.18/faidx.5': No space left on device cp: error writing '/tmp/Rtmp9iHgVQ/Rbuild3f721f39ed1d7a/Rhtslib/src/htslib-1.18/faidx.c': No space left on device cp: error writing '/tmp/Rtmp9iHgVQ/Rbuild3f721f39ed1d7a/Rhtslib/src/htslib-1.18/header.c': No space left on device cp: error writing '/tmp/Rtmp9iHgVQ/Rbuild3f721f39ed1d7a/Rhtslib/src/htslib-1.18/header.h': No space left on device cp: error writing '/tmp/Rtmp9iHgVQ/Rbuild3f721f39ed1d7a/Rhtslib/src/htslib-1.18/hfile.c': No space left on device cp: error writing '/tmp/Rtmp9iHgVQ/Rbuild3f721f39ed1d7a/Rhtslib/src/htslib-1.18/hfile_gcs.c': No space left on device cp: error writing '/tmp/Rtmp9iHgVQ/Rbuild3f721f39ed1d7a/Rhtslib/src/htslib-1.18/hfile_internal.h': No space left on device cp: error writing '/tmp/Rtmp9iHgVQ/Rbuild3f721f39ed1d7a/Rhtslib/src/htslib-1.18/hfile_libcurl.c': No space left on device cp: error writing '/tmp/Rtmp9iHgVQ/Rbuild3f721f39ed1d7a/Rhtslib/src/htslib-1.18/hfile_s3.c': No space left on device cp: error writing '/tmp/Rtmp9iHgVQ/Rbuild3f721f39ed1d7a/Rhtslib/src/htslib-1.18/hfile_s3_write.c': No space left on device cp: error writing '/tmp/Rtmp9iHgVQ/Rbuild3f721f39ed1d7a/Rhtslib/src/htslib-1.18/hts.c': No space left on device cp: error writing '/tmp/Rtmp9iHgVQ/Rbuild3f721f39ed1d7a/Rhtslib/src/htslib-1.18/hts_expr.c': No space left on device cp: error writing '/tmp/Rtmp9iHgVQ/Rbuild3f721f39ed1d7a/Rhtslib/src/htslib-1.18/hts_internal.h': No space left on device cp: error writing '/tmp/Rtmp9iHgVQ/Rbuild3f721f39ed1d7a/Rhtslib/src/htslib-1.18/hts_os.c': No space left on device cp: error writing '/tmp/Rtmp9iHgVQ/Rbuild3f721f39ed1d7a/Rhtslib/src/htslib-1.18/hts_probe_cc.sh': No space left on device cp: error writing '/tmp/Rtmp9iHgVQ/Rbuild3f721f39ed1d7a/Rhtslib/src/htslib-1.18/hts_time_funcs.h': No space left on device cp: error writing '/tmp/Rtmp9iHgVQ/Rbuild3f721f39ed1d7a/Rhtslib/src/htslib-1.18/htscodecs_bundled.mk': No space left on device cp: error writing '/tmp/Rtmp9iHgVQ/Rbuild3f721f39ed1d7a/Rhtslib/src/htslib-1.18/htscodecs_external.mk': No space left on device cp: error writing '/tmp/Rtmp9iHgVQ/Rbuild3f721f39ed1d7a/Rhtslib/src/htslib-1.18/htsfile.1': No space left on device cp: error writing '/tmp/Rtmp9iHgVQ/Rbuild3f721f39ed1d7a/Rhtslib/src/htslib-1.18/htsfile.c': No space left on device cp: error writing '/tmp/Rtmp9iHgVQ/Rbuild3f721f39ed1d7a/Rhtslib/src/htslib-1.18/htslib-s3-plugin.7': No space left on device cp: error writing '/tmp/Rtmp9iHgVQ/Rbuild3f721f39ed1d7a/Rhtslib/src/htslib-1.18/htslib.map': No space left on device cp: error writing '/tmp/Rtmp9iHgVQ/Rbuild3f721f39ed1d7a/Rhtslib/src/htslib-1.18/htslib.mk': No space left on device cp: error writing '/tmp/Rtmp9iHgVQ/Rbuild3f721f39ed1d7a/Rhtslib/src/htslib-1.18/htslib.pc.in': No space left on device cp: error writing '/tmp/Rtmp9iHgVQ/Rbuild3f721f39ed1d7a/Rhtslib/src/htslib-1.18/htslib_vars.mk': No space left on device cp: error writing '/tmp/Rtmp9iHgVQ/Rbuild3f721f39ed1d7a/Rhtslib/src/htslib-1.18/kfunc.c': No space left on device cp: error writing '/tmp/Rtmp9iHgVQ/Rbuild3f721f39ed1d7a/Rhtslib/src/htslib-1.18/kstring.c': No space left on device cp: error writing '/tmp/Rtmp9iHgVQ/Rbuild3f721f39ed1d7a/Rhtslib/src/htslib-1.18/md5.c': No space left on device cp: error writing '/tmp/Rtmp9iHgVQ/Rbuild3f721f39ed1d7a/Rhtslib/src/htslib-1.18/multipart.c': No space left on device cp: error writing '/tmp/Rtmp9iHgVQ/Rbuild3f721f39ed1d7a/Rhtslib/src/htslib-1.18/plugin.c': No space left on device cp: error writing '/tmp/Rtmp9iHgVQ/Rbuild3f721f39ed1d7a/Rhtslib/src/htslib-1.18/probaln.c': No space left on device cp: error writing '/tmp/Rtmp9iHgVQ/Rbuild3f721f39ed1d7a/Rhtslib/src/htslib-1.18/realn.c': No space left on device cp: error writing '/tmp/Rtmp9iHgVQ/Rbuild3f721f39ed1d7a/Rhtslib/src/htslib-1.18/regidx.c': No space left on device cp: error writing '/tmp/Rtmp9iHgVQ/Rbuild3f721f39ed1d7a/Rhtslib/src/htslib-1.18/region.c': No space left on device cp: error writing '/tmp/Rtmp9iHgVQ/Rbuild3f721f39ed1d7a/Rhtslib/src/htslib-1.18/sam.5': No space left on device cp: error writing '/tmp/Rtmp9iHgVQ/Rbuild3f721f39ed1d7a/Rhtslib/src/htslib-1.18/sam.c': No space left on device cp: error writing '/tmp/Rtmp9iHgVQ/Rbuild3f721f39ed1d7a/Rhtslib/src/htslib-1.18/sam_internal.h': No space left on device cp: error writing '/tmp/Rtmp9iHgVQ/Rbuild3f721f39ed1d7a/Rhtslib/src/htslib-1.18/sam_mods.c': No space left on device cp: error writing '/tmp/Rtmp9iHgVQ/Rbuild3f721f39ed1d7a/Rhtslib/src/htslib-1.18/synced_bcf_reader.c': No space left on device cp: error writing '/tmp/Rtmp9iHgVQ/Rbuild3f721f39ed1d7a/Rhtslib/src/htslib-1.18/tabix.1': No space left on device cp: error writing '/tmp/Rtmp9iHgVQ/Rbuild3f721f39ed1d7a/Rhtslib/src/htslib-1.18/tabix.c': No space left on device cp: error writing '/tmp/Rtmp9iHgVQ/Rbuild3f721f39ed1d7a/Rhtslib/src/htslib-1.18/tbx.c': No space left on device cp: error writing '/tmp/Rtmp9iHgVQ/Rbuild3f721f39ed1d7a/Rhtslib/src/htslib-1.18/textutils.c': No space left on device cp: error writing '/tmp/Rtmp9iHgVQ/Rbuild3f721f39ed1d7a/Rhtslib/src/htslib-1.18/textutils_internal.h': No space left on device cp: error writing '/tmp/Rtmp9iHgVQ/Rbuild3f721f39ed1d7a/Rhtslib/src/htslib-1.18/thread_pool.c': No space left on device cp: error writing '/tmp/Rtmp9iHgVQ/Rbuild3f721f39ed1d7a/Rhtslib/src/htslib-1.18/thread_pool_internal.h': No space left on device cp: error writing '/tmp/Rtmp9iHgVQ/Rbuild3f721f39ed1d7a/Rhtslib/src/htslib-1.18/vcf.5': No space left on device cp: error writing '/tmp/Rtmp9iHgVQ/Rbuild3f721f39ed1d7a/Rhtslib/src/htslib-1.18/vcf.c': No space left on device cp: error writing '/tmp/Rtmp9iHgVQ/Rbuild3f721f39ed1d7a/Rhtslib/src/htslib-1.18/vcf_sweep.c': No space left on device cp: error writing '/tmp/Rtmp9iHgVQ/Rbuild3f721f39ed1d7a/Rhtslib/src/htslib-1.18/vcfutils.c': No space left on device cp: error writing '/tmp/Rtmp9iHgVQ/Rbuild3f721f39ed1d7a/Rhtslib/src/htslib-1.18/version.sh': No space left on device cp: error writing '/tmp/Rtmp9iHgVQ/Rbuild3f721f39ed1d7a/Rhtslib/src/Makevars': No space left on device cp: error writing '/tmp/Rtmp9iHgVQ/Rbuild3f721f39ed1d7a/Rhtslib/src/Makevars.common': No space left on device cp: error writing '/tmp/Rtmp9iHgVQ/Rbuild3f721f39ed1d7a/Rhtslib/src/Makevars.win': No space left on device cp: error writing '/tmp/Rtmp9iHgVQ/Rbuild3f721f39ed1d7a/Rhtslib/src/R_init_Rhtslib.c': No space left on device cp: cannot create directory '/tmp/Rtmp9iHgVQ/Rbuild3f721f39ed1d7a/Rhtslib/vignettes': No space left on device ERROR copying to build directory failed