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This page was generated on 2025-12-11 06:35 -0500 (Thu, 11 Dec 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| teran2 | Linux (Ubuntu 24.04.3 LTS) | x86_64 | R Under development (unstable) (2025-10-28 r88973) -- "Unsuffered Consequences" | 926 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 166/230 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | |||||||
| ProtGenerics 1.43.0 (landing page) Laurent Gatto
| teran2 | Linux (Ubuntu 24.04.3 LTS) / x86_64 | ERROR | OK | ERROR | |||||||
|
To the developers/maintainers of the ProtGenerics package: - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: ProtGenerics |
| Version: 1.43.0 |
| Command: /home/rapidbuild/bbs-3.23-bioc-rapid/R/bin/R CMD check --install=check:ProtGenerics.install-out.txt --library=/home/rapidbuild/bbs-3.23-bioc-rapid/R/site-library --timings ProtGenerics_1.43.0.tar.gz |
| StartedAt: 2025-12-11 06:30:29 -0500 (Thu, 11 Dec 2025) |
| EndedAt: 2025-12-11 06:30:32 -0500 (Thu, 11 Dec 2025) |
| EllapsedTime: 3.3 seconds |
| RetCode: 1 |
| Status: ERROR |
| CheckDir: ProtGenerics.Rcheck |
| Warnings: NA |
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### Running command:
###
### /home/rapidbuild/bbs-3.23-bioc-rapid/R/bin/R CMD check --install=check:ProtGenerics.install-out.txt --library=/home/rapidbuild/bbs-3.23-bioc-rapid/R/site-library --timings ProtGenerics_1.43.0.tar.gz
###
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* using log directory ‘/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/ProtGenerics.Rcheck’
* using R Under development (unstable) (2025-10-28 r88973)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
GNU Fortran (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
* running under: Ubuntu 24.04.3 LTS
* using session charset: UTF-8
* checking for file ‘ProtGenerics/DESCRIPTION’ ... OK
* this is package ‘ProtGenerics’ version ‘1.43.0’
* checking CRAN incoming feasibility ... NOTE
Maintainer: ‘Laurent Gatto <laurent.gatto@uclouvain.be>’
Unknown, possibly misspelled, fields in DESCRIPTION:
‘git_url’ ‘git_branch’ ‘git_last_commit’ ‘git_last_commit_date’
No Authors@R field in DESCRIPTION.
Please add one, modifying
Authors@R: c(person(given = "Laurent",
family = "Gatto",
role = c("aut", "cre"),
email = "laurent.gatto@uclouvain.be"),
person(given = "Johannes",
family = "Rainer",
role = "aut",
email = "johannes.rainer@eurac.edu"))
as necessary.
The Title field should be in title case. Current version is:
‘Generic infrastructure for Bioconductor mass spectrometry packages’
In title case that is:
‘Generic Infrastructure for Bioconductor Mass Spectrometry Packages’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘ProtGenerics’ can be installed ... ERROR
Installation failed.
See ‘/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/ProtGenerics.Rcheck/00install.out’ for details.
* DONE
Status: 1 ERROR, 1 NOTE
See
‘/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/ProtGenerics.Rcheck/00check.log’
for details.
ProtGenerics.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/rapidbuild/bbs-3.23-bioc-rapid/R/bin/R CMD INSTALL ProtGenerics ### ############################################################################## ############################################################################## Fatal error: cannot create 'R_TempDir'