Rapid builds (Linux only) of a subset of BioC 3.22<BR>Report updated every 6 hours - BUILD results for ExperimentHub on teran2

Hostname	OS	Arch (*)	R version	Installed pkgs
teran2	Linux (Ubuntu 24.04.3 LTS)	x86_64	4.5.1 (2025-06-13) -- "Great Square Root"	901
Click on any hostname to see more info about the system (e.g. compilers) () as reported by 'uname -p', except on Windows and Mac OS X*

BUILD results for ExperimentHub on teran2

To the developers/maintainers of the ExperimentHub package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: ExperimentHub

Version: 2.99.6

Command: /home/rapidbuild/bbs-3.22-bioc-rapid/R/bin/R CMD build --keep-empty-dirs --no-resave-data ExperimentHub

StartedAt: 2025-10-28 06:35:50 -0400 (Tue, 28 Oct 2025)

EndedAt: 2025-10-28 06:36:06 -0400 (Tue, 28 Oct 2025)

EllapsedTime: 16.0 seconds

RetCode: 1

Status: ERROR

PackageFile: None

PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/rapidbuild/bbs-3.22-bioc-rapid/R/bin/R CMD build --keep-empty-dirs --no-resave-data ExperimentHub
###
##############################################################################
##############################################################################


* checking for file ‘ExperimentHub/DESCRIPTION’ ... OK
* preparing ‘ExperimentHub’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘ExperimentHub.Rmd’ using rmarkdown

Quitting from ExperimentHub.Rmd:140-142 [dm3]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error:
! failed to load resource
  name: EH166
  title: ERR188297
  reason: require("GenomicAlignments") failed: use BiocManager::install() to install package?
---
Backtrace:
     ▆
  1. ├─apData[["EH166"]]
  2. └─apData[["EH166"]]
  3.   └─ExperimentHub (local) .local(x, i, j = j, ...)
  4.     ├─methods::callNextMethod(...)
  5.     │ └─base::eval(call, callEnv)
  6.     │   └─base::eval(call, callEnv)
  7.     └─AnnotationHub (local) .nextMethod(...)
  8.       └─AnnotationHub (local) .local(x, i, j = j, ...)
  9.         └─AnnotationHub:::.Hub_get1(...)
 10.           └─base::tryCatch(...)
 11.             └─base (local) tryCatchList(expr, classes, parentenv, handlers)
 12.               └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
 13.                 └─value[[3L]](cond)
 14.                   └─base::tryCatch(...)
 15.                     └─base (local) tryCatchList(expr, classes, parentenv, handlers)
 16.                       └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
 17.                         └─value[[3L]](cond)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'ExperimentHub.Rmd' failed with diagnostics:
failed to load resource
  name: EH166
  title: ERR188297
  reason: require("GenomicAlignments") failed: use BiocManager::install() to install package?
--- failed re-building ‘ExperimentHub.Rmd’

SUMMARY: processing the following file failed:
  ‘ExperimentHub.Rmd’

Error: Vignette re-building failed.
Execution halted