| Back to Rapid builds (Linux only) of a subset of BioC 3.23 Report updated every 6 hours |
This page was generated on 2025-12-11 13:10 -0500 (Thu, 11 Dec 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| teran2 | Linux (Ubuntu 24.04.3 LTS) | x86_64 | R Under development (unstable) (2025-10-28 r88973) -- "Unsuffered Consequences" | 926 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 82/230 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | |||||||
| EnrichedHeatmap 1.41.0 (landing page) Zuguang Gu
| teran2 | Linux (Ubuntu 24.04.3 LTS) / x86_64 | OK | ERROR | skipped | |||||||
|
To the developers/maintainers of the EnrichedHeatmap package: - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: EnrichedHeatmap |
| Version: 1.41.0 |
| Command: /home/rapidbuild/bbs-3.23-bioc-rapid/R/bin/R CMD build --keep-empty-dirs --no-resave-data EnrichedHeatmap |
| StartedAt: 2025-12-11 12:33:16 -0500 (Thu, 11 Dec 2025) |
| EndedAt: 2025-12-11 12:35:09 -0500 (Thu, 11 Dec 2025) |
| EllapsedTime: 113.1 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
##############################################################################
##############################################################################
###
### Running command:
###
### /home/rapidbuild/bbs-3.23-bioc-rapid/R/bin/R CMD build --keep-empty-dirs --no-resave-data EnrichedHeatmap
###
##############################################################################
##############################################################################
* checking for file ‘EnrichedHeatmap/DESCRIPTION’ ... OK
* preparing ‘EnrichedHeatmap’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package (it is needed to build vignettes)
* creating vignettes ... ERROR
--- re-building ‘EnrichedHeatmap.Rmd’ using rmarkdown
--- finished re-building ‘EnrichedHeatmap.Rmd’
--- re-building ‘roadmap.Rmd’ using rmarkdown
trying URL 'https://jokergoo.github.io/supplementary/EnrichedHeatmap-supplementary/roadmap_normalized_matrices.RData'
Content type 'application/octet-stream' length 26598186 bytes (25.4 MB)
===============
downloaded 7.8 MB
Warning in close.connection(con) :
Problem closing connection: No space left on device
Quitting from roadmap.Rmd:43-53 [unnamed-chunk-2]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `download.file()`:
! download from 'https://jokergoo.github.io/supplementary/EnrichedHeatmap-supplementary/roadmap_normalized_matrices.RData' failed
---
Backtrace:
▆
1. └─utils::download.file(...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'roadmap.Rmd' failed with diagnostics:
download from 'https://jokergoo.github.io/supplementary/EnrichedHeatmap-supplementary/roadmap_normalized_matrices.RData' failed
--- failed re-building ‘roadmap.Rmd’
--- re-building ‘row_odering.Rmd’ using rmarkdown
Warning in close.connection(con) :
Problem closing connection: No space left on device
pandoc: /tmp/Rtmp0eHIed/Rbuild3707ef2a8c5253/EnrichedHeatmap/vignettes/row_odering.html: hClose: resource exhausted (No space left on device)
Error: processing vignette 'row_odering.Rmd' failed with diagnostics:
pandoc document conversion failed with error 1
--- failed re-building ‘row_odering.Rmd’
--- re-building ‘visualize_categorical_signals_wrapper.Rmd’ using rmarkdown
pandoc: /tmp/Rtmp0eHIed/Rbuild3707ef2a8c5253/EnrichedHeatmap/vignettes/visualize_categorical_signals_wrapper.html: hClose: resource exhausted (No space left on device)
Error: processing vignette 'visualize_categorical_signals_wrapper.Rmd' failed with diagnostics:
pandoc document conversion failed with error 1
--- failed re-building ‘visualize_categorical_signals_wrapper.Rmd’
SUMMARY: processing the following files failed:
‘roadmap.Rmd’ ‘row_odering.Rmd’ ‘visualize_categorical_signals_wrapper.Rmd’
Error: Vignette re-building failed.
Execution halted