Rapid builds (Linux only) of a subset of BioC 3.22<BR>Report updated every 6 hours

Hostname	OS	Arch (*)	R version	Installed pkgs
teran2	Linux (Ubuntu 24.04.3 LTS)	x86_64	4.5.1 (2025-06-13) -- "Great Square Root"	900
Click on any hostname to see more info about the system (e.g. compilers) () as reported by 'uname -p', except on Windows and Mac OS X*

BUILD results for DEXSeq on teran2

To the developers/maintainers of the DEXSeq package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: DEXSeq

Version: 1.55.1

Command: /home/rapidbuild/bbs-3.22-bioc-rapid/R/bin/R CMD build --keep-empty-dirs --no-resave-data DEXSeq

StartedAt: 2025-10-26 06:33:10 -0400 (Sun, 26 Oct 2025)

EndedAt: 2025-10-26 06:33:39 -0400 (Sun, 26 Oct 2025)

EllapsedTime: 28.9 seconds

RetCode: 1

Status: ERROR

PackageFile: None

PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/rapidbuild/bbs-3.22-bioc-rapid/R/bin/R CMD build --keep-empty-dirs --no-resave-data DEXSeq
###
##############################################################################
##############################################################################


* checking for file ‘DEXSeq/DESCRIPTION’ ... OK
* preparing ‘DEXSeq’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘DEXSeq.Rmd’ using rmarkdown

Quitting from DEXSeq.Rmd:80-95 [unnamed-chunk-2]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `library()`:
! there is no package called 'GenomicFeatures'
---
Backtrace:
    ▆
 1. └─base::library(GenomicFeatures)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'DEXSeq.Rmd' failed with diagnostics:
there is no package called 'GenomicFeatures'
--- failed re-building ‘DEXSeq.Rmd’

SUMMARY: processing the following file failed:
  ‘DEXSeq.Rmd’

Error: Vignette re-building failed.
Execution halted