| Back to Rapid builds (Linux only) of a subset of BioC 3.23 Report updated every 6 hours |
This page was generated on 2025-11-06 10:11 -0500 (Thu, 06 Nov 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| teran2 | Linux (Ubuntu 24.04.3 LTS) | x86_64 | R Under development (unstable) (2025-10-28 r88973) -- "Unsuffered Consequences" | 917 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 39/230 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | |||||||
| BiocVersion 3.23.1 (landing page) Bioconductor Package Maintainer
| teran2 | Linux (Ubuntu 24.04.3 LTS) / x86_64 | OK | OK | OK | |||||||
|
To the developers/maintainers of the BiocVersion package: - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: BiocVersion |
| Version: 3.23.1 |
| Command: /home/rapidbuild/bbs-3.23-bioc-rapid/R/bin/R CMD check --install=check:BiocVersion.install-out.txt --library=/home/rapidbuild/bbs-3.23-bioc-rapid/R/site-library --timings BiocVersion_3.23.1.tar.gz |
| StartedAt: 2025-11-06 07:55:49 -0500 (Thu, 06 Nov 2025) |
| EndedAt: 2025-11-06 07:55:58 -0500 (Thu, 06 Nov 2025) |
| EllapsedTime: 9.0 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: BiocVersion.Rcheck |
| Warnings: 0 |
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### Running command:
###
### /home/rapidbuild/bbs-3.23-bioc-rapid/R/bin/R CMD check --install=check:BiocVersion.install-out.txt --library=/home/rapidbuild/bbs-3.23-bioc-rapid/R/site-library --timings BiocVersion_3.23.1.tar.gz
###
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* using log directory ‘/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/BiocVersion.Rcheck’
* using R Under development (unstable) (2025-10-28 r88973)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
GNU Fortran (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
* running under: Ubuntu 24.04.3 LTS
* using session charset: UTF-8
* checking for file ‘BiocVersion/DESCRIPTION’ ... OK
* this is package ‘BiocVersion’ version ‘3.23.1’
* package encoding: UTF-8
* checking CRAN incoming feasibility ... NOTE
Maintainer: ‘Bioconductor Package Maintainer <maintainer@bioconductor.org>’
Unknown, possibly misspelled, fields in DESCRIPTION:
‘git_url’ ‘git_branch’ ‘git_last_commit’ ‘git_last_commit_date’
The Title field should be in title case. Current version is:
‘Set the appropriate version of Bioconductor packages’
In title case that is:
‘Set the Appropriate Version of Bioconductor Packages’
The Description field should not start with the package name,
'This package' or similar.
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘BiocVersion’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking use of S3 registration ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking examples ... OK
* checking PDF version of manual ... OK
* DONE
Status: 1 NOTE
See
‘/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/BiocVersion.Rcheck/00check.log’
for details.
BiocVersion.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/rapidbuild/bbs-3.23-bioc-rapid/R/bin/R CMD INSTALL BiocVersion ### ############################################################################## ############################################################################## * installing to library ‘/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/R/site-library’ * installing *source* package ‘BiocVersion’ ... ** this is package ‘BiocVersion’ version ‘3.23.1’ ** using staged installation ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (BiocVersion)
BiocVersion.Rcheck/BiocVersion-Ex.timings
| name | user | system | elapsed | |
| BiocVersion-pkg | 0.001 | 0.001 | 0.002 | |