Back to Long Tests report for BioC 3.22

This page was generated on 2025-07-26 23:55 -0400 (Sat, 26 Jul 2025).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 24.04.2 LTS)x86_644.5.1 (2025-06-13) -- "Great Square Root" 4795
palomino8Windows Server 2022 Datacenterx644.5.1 (2025-06-13 ucrt) -- "Great Square Root" 4534
lconwaymacOS 12.7.1 Montereyx86_644.5.1 (2025-06-13) -- "Great Square Root" 4577
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 5/29HostnameOS / ArchCHECK
biodbChebi 1.15.1  (landing page)
Pierrick Roger
Snapshot Date: 2025-07-26 09:55 -0400 (Sat, 26 Jul 2025)
git_url: https://git.bioconductor.org/packages/biodbChebi
git_branch: devel
git_last_commit: b5e26aa
git_last_commit_date: 2025-06-24 10:11:00 -0400 (Tue, 24 Jun 2025)
nebbiolo2Linux (Ubuntu 24.04.2 LTS) / x86_64  OK  
palomino8Windows Server 2022 Datacenter / x64  OK  
lconwaymacOS 12.7.1 Monterey / x86_64  OK  

CHECK results for biodbChebi on nebbiolo2

To the developers/maintainers of the biodbChebi package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: biodbChebi
Version: 1.15.1
Command: /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD check --test-dir=longtests --no-stop-on-test-error --no-codoc --no-examples --no-manual --ignore-vignettes --check-subdirs=no biodbChebi_1.15.1.tar.gz
StartedAt: 2025-07-26 16:01:06 -0400 (Sat, 26 Jul 2025)
EndedAt: 2025-07-26 16:02:39 -0400 (Sat, 26 Jul 2025)
EllapsedTime: 93.1 seconds
RetCode: 0
Status:   OK  
CheckDir: biodbChebi.Rcheck
Warnings: 0

Tests output

biodbChebi.Rcheck/tests/testthat.Rout


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Copyright (C) 2025 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu

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> # Script needed to run testthat automatically from ‘R CMD check’. See
> # testthat::test_dir documentation.
> library(testthat)
> library(biodbChebi)
> Sys.setenv(TESTTHAT_REPORTER="summary")
> Sys.setenv(BIODB_LOG_DST="console")
> test_check("biodbChebi")
biodb.INFO [2025-07-26 16:01:38.853][biodb::testContext]
biodb.INFO [2025-07-26 16:01:38.856][biodb::testContext] ********************************************************************************
biodb.INFO [2025-07-26 16:01:38.857][biodb::testContext] Test context - Generic long tests
biodb.INFO [2025-07-26 16:01:38.858][biodb::testContext] ********************************************************************************
biodb.INFO [2025-07-26 16:01:38.859][biodb::testContext]
biodb.INFO [2025-07-26 16:01:38.866][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.17.1.
biodb.DEBUG[2025-07-26 16:01:38.868][self$loadDefinitions] Load definitions from file "/home/biocbuild/bbs-3.22-bioc/R/site-library/biodb/definitions.yml".
biodb.DEBUG[2025-07-26 16:01:38.875][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-07-26 16:01:38.876][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2025-07-26 16:01:38.877][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2025-07-26 16:01:38.878][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-07-26 16:01:38.879][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:01:38.880][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-26 16:01:38.881][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2025-07-26 16:01:38.901][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2025-07-26 16:01:38.902][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-07-26 16:01:38.903][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:01:38.904][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-26 16:01:38.905][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2025-07-26 16:01:38.906][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2025-07-26 16:01:38.907][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-07-26 16:01:38.908][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:01:38.909][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-26 16:01:38.910][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2025-07-26 16:01:38.911][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2025-07-26 16:01:38.912][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2025-07-26 16:01:38.913][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-07-26 16:01:38.914][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:01:38.915][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-26 16:01:38.916][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2025-07-26 16:01:38.917][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2025-07-26 16:01:38.918][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2025-07-26 16:01:38.919][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-07-26 16:01:38.920][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:01:38.921][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-26 16:01:38.922][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2025-07-26 16:01:38.923][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2025-07-26 16:01:38.924][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-07-26 16:01:38.925][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:01:38.934][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-26 16:01:38.935][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2025-07-26 16:01:38.936][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2025-07-26 16:01:38.937][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2025-07-26 16:01:38.938][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-07-26 16:01:38.939][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:01:38.940][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-26 16:01:38.940][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2025-07-26 16:01:38.941][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2025-07-26 16:01:38.942][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-07-26 16:01:38.943][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:01:38.944][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-26 16:01:38.945][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2025-07-26 16:01:38.946][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2025-07-26 16:01:38.946][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2025-07-26 16:01:38.947][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-07-26 16:01:38.948][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:01:38.949][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-26 16:01:38.950][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2025-07-26 16:01:38.951][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2025-07-26 16:01:38.952][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2025-07-26 16:01:38.952][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2025-07-26 16:01:38.953][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2025-07-26 16:01:38.954][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2025-07-26 16:01:38.955][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-07-26 16:01:38.956][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:01:38.957][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-26 16:01:38.958][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2025-07-26 16:01:38.959][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2025-07-26 16:01:38.959][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-07-26 16:01:38.960][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:01:38.961][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-26 16:01:38.962][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2025-07-26 16:01:38.963][self$set] Set key entries.sep to "|".
biodb.DEBUG[2025-07-26 16:01:38.964][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-07-26 16:01:38.964][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:01:38.965][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-26 16:01:38.966][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2025-07-26 16:01:38.967][self$set] Set key offline to FALSE.
biodb.DEBUG[2025-07-26 16:01:38.968][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-07-26 16:01:38.969][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:01:38.969][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-26 16:01:38.970][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2025-07-26 16:01:38.971][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2025-07-26 16:01:38.972][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2025-07-26 16:01:38.973][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-07-26 16:01:38.974][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:01:38.974][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-26 16:01:38.975][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2025-07-26 16:01:38.976][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2025-07-26 16:01:38.980][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2025-07-26 16:01:38.980][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-07-26 16:01:38.981][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:01:38.982][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-26 16:01:38.983][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2025-07-26 16:01:38.984][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2025-07-26 16:01:38.985][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2025-07-26 16:01:38.986][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-07-26 16:01:38.987][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:01:38.987][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-26 16:01:38.991][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2025-07-26 16:01:39.021][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-07-26 16:01:39.036][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2025-07-26 16:01:39.037][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-07-26 16:01:39.038][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-07-26 16:01:39.038][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-07-26 16:01:39.039][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-07-26 16:01:39.040][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-07-26 16:01:39.041][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-07-26 16:01:39.042][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-07-26 16:01:39.043][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-07-26 16:01:39.044][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-07-26 16:01:39.045][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2025-07-26 16:01:39.046][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-07-26 16:01:39.047][self$setPropertyValue] Setting property "parsing.expr" to "<NULL>".
biodb.DEBUG[2025-07-26 16:01:39.048][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-07-26 16:01:39.049][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-07-26 16:01:39.049][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-07-26 16:01:39.049][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-07-26 16:01:39.049][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-07-26 16:01:39.049][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-07-26 16:01:39.050][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-07-26 16:01:39.050][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-07-26 16:01:39.051][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-07-26 16:01:39.052][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-07-26 16:01:39.053][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-07-26 16:01:39.054][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-07-26 16:01:39.055][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-07-26 16:01:39.056][self$setPropertyValue] Setting property "urls" to "<NULL>".
biodb.DEBUG[2025-07-26 16:01:39.057][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-07-26 16:01:39.057][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-07-26 16:01:39.058][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-07-26 16:01:39.059][self$setPropertyValue] Setting property "xml.ns" to "<NULL>".
biodb.DEBUG[2025-07-26 16:01:39.060][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2025-07-26 16:01:39.062][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-07-26 16:01:39.063][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2025-07-26 16:01:39.064][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-07-26 16:01:39.065][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-07-26 16:01:39.066][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-07-26 16:01:39.066][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-07-26 16:01:39.067][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-07-26 16:01:39.068][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-07-26 16:01:39.069][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-07-26 16:01:39.070][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-07-26 16:01:39.071][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-07-26 16:01:39.072][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2025-07-26 16:01:39.073][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-07-26 16:01:39.074][self$setPropertyValue] Setting property "parsing.expr" to "<NULL>".
biodb.DEBUG[2025-07-26 16:01:39.075][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-07-26 16:01:39.076][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-07-26 16:01:39.076][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-07-26 16:01:39.076][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-07-26 16:01:39.076][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-07-26 16:01:39.076][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-07-26 16:01:39.077][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-07-26 16:01:39.077][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-07-26 16:01:39.078][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-07-26 16:01:39.079][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-07-26 16:01:39.080][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-07-26 16:01:39.081][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-07-26 16:01:39.082][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-07-26 16:01:39.083][self$setPropertyValue] Setting property "urls" to "<NULL>".
biodb.DEBUG[2025-07-26 16:01:39.084][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-07-26 16:01:39.084][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-07-26 16:01:39.085][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-07-26 16:01:39.086][self$setPropertyValue] Setting property "xml.ns" to "<NULL>".
biodb.DEBUG[2025-07-26 16:01:39.087][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2025-07-26 16:01:39.089][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-07-26 16:01:39.090][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2025-07-26 16:01:39.091][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-07-26 16:01:39.092][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-07-26 16:01:39.092][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-07-26 16:01:39.093][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-07-26 16:01:39.094][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-07-26 16:01:39.095][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-07-26 16:01:39.096][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-07-26 16:01:39.097][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-07-26 16:01:39.098][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-07-26 16:01:39.099][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2025-07-26 16:01:39.100][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-07-26 16:01:39.101][self$setPropertyValue] Setting property "parsing.expr" to "<NULL>".
biodb.DEBUG[2025-07-26 16:01:39.102][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-07-26 16:01:39.103][self$setPropertyValue] Setting property "searchable.fields" to "<NULL>".
biodb.DEBUG[2025-07-26 16:01:39.103][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-07-26 16:01:39.104][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-07-26 16:01:39.105][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-07-26 16:01:39.106][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-07-26 16:01:39.107][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-07-26 16:01:39.108][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-07-26 16:01:39.109][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-07-26 16:01:39.109][self$setPropertyValue] Setting property "urls" to "<NULL>".
biodb.DEBUG[2025-07-26 16:01:39.110][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-07-26 16:01:39.111][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-07-26 16:01:39.112][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-07-26 16:01:39.113][self$setPropertyValue] Setting property "xml.ns" to "<NULL>".
biodb.DEBUG[2025-07-26 16:01:39.114][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2025-07-26 16:01:39.116][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-07-26 16:01:39.117][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2025-07-26 16:01:39.117][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-07-26 16:01:39.118][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-07-26 16:01:39.119][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-07-26 16:01:39.120][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-07-26 16:01:39.121][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-07-26 16:01:39.122][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-07-26 16:01:39.123][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-07-26 16:01:39.124][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-07-26 16:01:39.125][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-07-26 16:01:39.126][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2025-07-26 16:01:39.127][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-07-26 16:01:39.128][self$setPropertyValue] Setting property "parsing.expr" to "<NULL>".
biodb.DEBUG[2025-07-26 16:01:39.129][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-07-26 16:01:39.134][self$setPropertyValue] Setting property "searchable.fields" to "<NULL>".
biodb.DEBUG[2025-07-26 16:01:39.135][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-07-26 16:01:39.136][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-07-26 16:01:39.136][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-07-26 16:01:39.137][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-07-26 16:01:39.138][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-07-26 16:01:39.139][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-07-26 16:01:39.140][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-07-26 16:01:39.141][self$setPropertyValue] Setting property "urls" to "<NULL>".
biodb.DEBUG[2025-07-26 16:01:39.142][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-07-26 16:01:39.142][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-07-26 16:01:39.143][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-07-26 16:01:39.144][self$setPropertyValue] Setting property "xml.ns" to "<NULL>".
biodb.DEBUG[2025-07-26 16:01:39.148][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-07-26 16:01:39.149][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:01:39.149][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-26 16:01:39.150][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-07-26 16:01:39.151][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:01:39.152][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:01:39.153][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:01:39.153][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-26 16:01:39.154][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-07-26 16:01:39.155][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:01:39.156][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:01:39.157][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:01:39.157][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-26 16:01:39.158][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-07-26 16:01:39.159][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:01:39.160][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:01:39.161][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:01:39.161][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-26 16:01:39.162][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-07-26 16:01:39.163][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:01:39.164][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:01:39.165][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:01:39.165][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-26 16:01:39.166][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-07-26 16:01:39.167][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:01:39.168][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:01:39.169][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:01:39.169][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-26 16:01:39.170][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-07-26 16:01:39.171][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:01:39.172][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:01:39.173][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:01:39.174][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-26 16:01:39.174][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-07-26 16:01:39.175][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:01:39.176][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:01:39.177][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:01:39.178][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-26 16:01:39.178][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-07-26 16:01:39.179][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:01:39.180][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:01:39.181][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:01:39.182][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-26 16:01:39.183][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-07-26 16:01:39.183][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:01:39.184][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:01:39.185][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:01:39.186][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-26 16:01:39.187][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-07-26 16:01:39.188][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:01:39.188][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:01:39.189][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:01:39.190][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-26 16:01:39.191][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-07-26 16:01:39.192][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:01:39.192][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:01:39.193][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:01:39.194][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-26 16:01:39.195][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-07-26 16:01:39.196][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:01:39.197][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:01:39.197][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:01:39.198][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-26 16:01:39.199][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-07-26 16:01:39.200][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:01:39.201][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:01:39.201][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:01:39.202][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-26 16:01:39.203][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-07-26 16:01:39.204][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:01:39.205][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:01:39.206][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:01:39.206][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-26 16:01:39.207][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-07-26 16:01:39.208][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:01:39.209][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:01:39.210][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:01:39.210][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-26 16:01:39.211][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-07-26 16:01:39.212][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:01:39.213][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:01:39.214][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:01:39.215][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-26 16:01:39.215][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2025-07-26 16:01:39.220][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2025-07-26 16:01:39.221][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2025-07-26 16:01:39.222][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2025-07-26 16:01:39.224][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2025-07-26 16:01:39.225][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2025-07-26 16:01:39.226][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2025-07-26 16:01:39.227][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2025-07-26 16:01:39.229][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2025-07-26 16:01:39.230][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2025-07-26 16:01:39.231][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-07-26 16:01:39.232][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2025-07-26 16:01:39.234][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2025-07-26 16:01:39.235][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2025-07-26 16:01:39.236][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2025-07-26 16:01:39.238][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2025-07-26 16:01:39.239][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2025-07-26 16:01:39.240][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2025-07-26 16:01:39.241][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2025-07-26 16:01:39.243][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2025-07-26 16:01:39.244][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2025-07-26 16:01:39.245][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2025-07-26 16:01:39.246][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2025-07-26 16:01:39.248][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2025-07-26 16:01:39.249][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2025-07-26 16:01:39.250][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2025-07-26 16:01:39.252][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2025-07-26 16:01:39.253][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2025-07-26 16:01:39.254][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2025-07-26 16:01:39.255][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2025-07-26 16:01:39.257][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2025-07-26 16:01:39.258][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2025-07-26 16:01:39.259][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2025-07-26 16:01:39.260][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2025-07-26 16:01:39.262][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2025-07-26 16:01:39.263][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2025-07-26 16:01:39.264][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2025-07-26 16:01:39.266][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2025-07-26 16:01:39.267][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2025-07-26 16:01:39.268][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2025-07-26 16:01:39.269][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2025-07-26 16:01:39.271][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2025-07-26 16:01:39.272][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2025-07-26 16:01:39.273][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2025-07-26 16:01:39.275][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2025-07-26 16:01:39.276][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2025-07-26 16:01:39.277][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2025-07-26 16:01:39.278][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2025-07-26 16:01:39.280][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2025-07-26 16:01:39.281][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2025-07-26 16:01:39.282][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2025-07-26 16:01:39.283][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2025-07-26 16:01:39.285][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2025-07-26 16:01:39.286][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2025-07-26 16:01:39.287][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2025-07-26 16:01:39.289][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2025-07-26 16:01:39.290][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2025-07-26 16:01:39.291][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2025-07-26 16:01:39.292][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2025-07-26 16:01:39.294][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2025-07-26 16:01:39.295][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2025-07-26 16:01:39.296][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2025-07-26 16:01:39.297][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2025-07-26 16:01:39.299][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2025-07-26 16:01:39.300][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2025-07-26 16:01:39.301][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2025-07-26 16:01:39.303][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2025-07-26 16:01:39.304][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2025-07-26 16:01:39.305][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2025-07-26 16:01:39.306][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2025-07-26 16:01:39.308][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2025-07-26 16:01:39.309][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2025-07-26 16:01:39.310][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2025-07-26 16:01:39.311][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2025-07-26 16:01:39.313][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2025-07-26 16:01:39.314][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2025-07-26 16:01:39.315][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2025-07-26 16:01:39.317][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2025-07-26 16:01:39.318][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2025-07-26 16:01:39.319][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2025-07-26 16:01:39.320][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2025-07-26 16:01:39.322][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2025-07-26 16:01:39.323][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2025-07-26 16:01:39.333][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2025-07-26 16:01:39.334][initialize] This is biodb version 1.17.1.
biodb.DEBUG[2025-07-26 16:01:39.337][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-07-26 16:01:39.338][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:01:39.339][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:01:39.340][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:01:39.341][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-26 16:01:39.345][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-07-26 16:01:39.346][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:01:39.346][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:01:39.347][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:01:39.348][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:01:39.349][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:01:39.350][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-26 16:01:39.350][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-07-26 16:01:39.351][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:01:39.352][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:01:39.353][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:01:39.354][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:01:39.354][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:01:39.355][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-26 16:01:39.356][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-07-26 16:01:39.357][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:01:39.358][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:01:39.359][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:01:39.359][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:01:39.360][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:01:39.361][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-26 16:01:39.362][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-07-26 16:01:39.363][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:01:39.363][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:01:39.364][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:01:39.365][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:01:39.366][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:01:39.367][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-26 16:01:39.367][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-07-26 16:01:39.368][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:01:39.369][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:01:39.370][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:01:39.371][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:01:39.371][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:01:39.372][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-26 16:01:39.373][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-07-26 16:01:39.374][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:01:39.375][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:01:39.375][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:01:39.376][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:01:39.377][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:01:39.378][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-26 16:01:39.379][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-07-26 16:01:39.380][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:01:39.380][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:01:39.381][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:01:39.382][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:01:39.383][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:01:39.384][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-26 16:01:39.385][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-07-26 16:01:39.385][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:01:39.386][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:01:39.387][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:01:39.388][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:01:39.389][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:01:39.389][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-26 16:01:39.390][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-07-26 16:01:39.391][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:01:39.392][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:01:39.393][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:01:39.394][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:01:39.394][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:01:39.395][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-26 16:01:39.396][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-07-26 16:01:39.397][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:01:39.398][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:01:39.398][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:01:39.399][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:01:39.400][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:01:39.401][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-26 16:01:39.402][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-07-26 16:01:39.403][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:01:39.403][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:01:39.404][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:01:39.405][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:01:39.406][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:01:39.407][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-26 16:01:39.407][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-07-26 16:01:39.408][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:01:39.409][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:01:39.410][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:01:39.411][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:01:39.412][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:01:39.412][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-26 16:01:39.413][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-07-26 16:01:39.414][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:01:39.415][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:01:39.416][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:01:39.416][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:01:39.417][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:01:39.418][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-26 16:01:39.419][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-07-26 16:01:39.420][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:01:39.420][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:01:39.421][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:01:39.422][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:01:39.423][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:01:39.424][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-26 16:01:39.425][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-07-26 16:01:39.425][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:01:39.426][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:01:39.435][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:01:39.437][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:01:39.438][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:01:39.439][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-26 16:01:39.440][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-07-26 16:01:39.441][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:01:39.442][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:01:39.443][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:01:39.444][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:01:39.445][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:01:39.446][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-26 16:01:39.449][biodb$loadDefinitions] Load definitions from file "/home/biocbuild/bbs-3.22-bioc-longtests/meat/biodbChebi.Rcheck/biodbChebi/definitions.yml".
biodb.DEBUG[2025-07-26 16:01:39.461][self$getDbsInfo()$define] Define connector chebi.
biodb.DEBUG[2025-07-26 16:01:39.463][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-07-26 16:01:39.464][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2025-07-26 16:01:39.465][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-07-26 16:01:39.466][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-07-26 16:01:39.467][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-07-26 16:01:39.468][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-07-26 16:01:39.469][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2025-07-26 16:01:39.470][self$setPropertyValue] Setting property "entry.content.encoding" to "UTF-8".
biodb.DEBUG[2025-07-26 16:01:39.471][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2025-07-26 16:01:39.472][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-07-26 16:01:39.473][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-07-26 16:01:39.474][self$setPropertyValue] Setting property "name" to "ChEBI".
biodb.DEBUG[2025-07-26 16:01:39.476][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-07-26 16:01:39.477][self$setPropertyValue] Setting property "parsing.expr" to "substring-after(//chebi:return/chebi:chebiId,'CHEBI:')".
biodb.DEBUG[2025-07-26 16:01:39.477][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:charge".
biodb.DEBUG[2025-07-26 16:01:39.477][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:Formulae/chebi:source[text()='ChEBI']/../chebi:data", "(//chebi:Formulae/chebi:data)[1]")".
biodb.DEBUG[2025-07-26 16:01:39.477][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchi".
biodb.DEBUG[2025-07-26 16:01:39.477][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchiKey".
biodb.DEBUG[2025-07-26 16:01:39.477][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:DatabaseLinks/chebi:type[text()='KEGG COMPOUND accession']/../chebi:data".
biodb.DEBUG[2025-07-26 16:01:39.477][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:mass".
biodb.DEBUG[2025-07-26 16:01:39.477][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:monoisotopicMass".
biodb.DEBUG[2025-07-26 16:01:39.477][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:chebiAsciiName", "//chebi:Synonyms/chebi:data")".
biodb.DEBUG[2025-07-26 16:01:39.477][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:entityStar".
biodb.DEBUG[2025-07-26 16:01:39.477][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:smiles".
biodb.DEBUG[2025-07-26 16:01:39.478][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2025-07-26 16:01:39.479][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-07-26 16:01:39.479][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-07-26 16:01:39.479][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-07-26 16:01:39.480][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2025-07-26 16:01:39.481][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-07-26 16:01:39.482][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-07-26 16:01:39.483][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-07-26 16:01:39.484][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-07-26 16:01:39.485][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-07-26 16:01:39.486][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-07-26 16:01:39.487][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-07-26 16:01:39.487][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/webservices/chebi/2.0/".
biodb.DEBUG[2025-07-26 16:01:39.488][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-07-26 16:01:39.488][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-07-26 16:01:39.489][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2025-07-26 16:01:39.490][self$setPropertyValue] Setting property "xml.ns" to "https://www.ebi.ac.uk/webservices/chebi".
biodb.DEBUG[2025-07-26 16:01:39.490][self$setPropertyValue] Setting property "xml.ns" to "http://www.w3.org/2001/XMLSchema".
biodb.DEBUG[2025-07-26 16:01:39.497][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2025-07-26 16:01:39.499][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-07-26 16:01:39.500][self$getEntryFields()$define] Define field n_stars.
biodb.DEBUG[2025-07-26 16:01:39.502][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2025-07-26 16:01:39.503][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2025-07-26 16:01:39.505][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2025-07-26 16:01:39.535][super$initialize] Initialize connector chebi.
biodb.DEBUG[2025-07-26 16:01:39.553][biodb$getFactory()$createConn] Creating new connector chebi for database class chebi .
biodb.INFO [2025-07-26 16:01:39.562][biodb::testThat]
biodb.INFO [2025-07-26 16:01:39.563][biodb::testThat] Running test function  test.entry.fields  (" Entry fields have a correct value ").
biodb.INFO [2025-07-26 16:01:39.564][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-07-26 16:01:39.565][biodb::testThat]
biodb.TRACE[2025-07-26 16:01:39.569][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/bbs-3.22-bioc-longtests/meat/biodbChebi.Rcheck/biodbChebi/testref/entry-chebi-15440-content.xml".
biodb.DEBUG[2025-07-26 16:01:39.580][biodb$getFactory()$createEntryFromCo ...] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-26 16:01:39.584][biodb$getFactory()$createEntryFromCo ...] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-26 16:01:39.592][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:01:39.593][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:01:39.594][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:01:39.606][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:01:39.607][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:01:39.608][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:01:39.609][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:01:39.618][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:39.619][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:39.620][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:39.621][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:39.623][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:39.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:39.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:39.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:39.639][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:01:39.641][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:01:39.642][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:39.642][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:39.670][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:01:39.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:01:39.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:39.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:39.674][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:01:39.676][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:01:39.676][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:39.677][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:39.679][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:01:39.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:01:39.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:39.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:39.683][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:01:39.684][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:01:39.685][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:39.686][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:39.687][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:01:39.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:01:39.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:39.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:39.691][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:01:39.692][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:01:39.693][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:39.694][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:39.695][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:01:39.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:01:39.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:39.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:39.699][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:01:39.700][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:01:39.701][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:39.702][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:39.703][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:01:39.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:01:39.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:39.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:39.707][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-26 16:01:39.708][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:39.709][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:39.709][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:39.711][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-26 16:01:39.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:39.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:39.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:39.714][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:39.715][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:39.716][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:39.717][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:39.718][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:39.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:39.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:39.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:39.722][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:01:39.723][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:01:39.724][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:39.725][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:39.726][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:01:39.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:01:39.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:39.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:39.730][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-26 16:01:39.731][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:01:39.732][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:39.733][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:39.734][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-26 16:01:39.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:01:39.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:39.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:39.738][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:01:39.739][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:01:39.740][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:39.741][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:39.742][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:01:39.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:01:39.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:39.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:39.746][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:39.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:39.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:39.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:39.749][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:39.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:39.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:39.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:39.753][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:39.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:39.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:39.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:39.757][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:39.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:39.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:39.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:39.761][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:39.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:39.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:39.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:39.764][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:39.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:39.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:39.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:39.774][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:39.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:39.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:39.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:39.807][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:39.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:39.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:39.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:39.810][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:39.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:39.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:39.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:39.814][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:39.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:39.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:39.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:01:39.818][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 15440.
biodb.TRACE[2025-07-26 16:01:39.820][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:01:39.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:01:39.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:39.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:39.824][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:01:39.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:01:39.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:39.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:39.848][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:01:39.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:01:39.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:39.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:39.852][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:01:39.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:01:39.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:39.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:39.856][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:39.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:39.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:39.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:39.859][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:39.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:39.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:39.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:39.863][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-07-26 16:01:39.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-07-26 16:01:39.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:39.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:39.866][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-07-26 16:01:39.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-07-26 16:01:39.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:39.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:39.870][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-07-26 16:01:39.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-07-26 16:01:39.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:39.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:39.874][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-07-26 16:01:39.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-07-26 16:01:39.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:39.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:39.879][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:39.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:39.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:39.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:39.894][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:39.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:39.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:39.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:39.901][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:39.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:39.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:39.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:39.905][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:39.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:39.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:39.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:39.908][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:39.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:39.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:39.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:39.914][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:39.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:39.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:39.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:39.921][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:39.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:39.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:39.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:39.924][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:39.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:39.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:39.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:39.928][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:39.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:39.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:39.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:39.932][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:39.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:39.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:39.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:39.936][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:39.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:39.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:39.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:39.945][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:39.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:39.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:39.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:39.949][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:39.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:39.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:39.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:39.952][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:39.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:39.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:39.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:39.956][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:39.957][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:39.958][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:39.959][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:39.960][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:39.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:39.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:39.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:39.970][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:39.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:39.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:39.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:39.974][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:39.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:39.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:39.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:39.977][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:39.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:39.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:39.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:39.981][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:39.982][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:39.983][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:39.984][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:39.985][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:39.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:39.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:39.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:39.995][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:01:39.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:01:39.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:39.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:39.999][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:01:40.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:01:40.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:40.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:40.002][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:01:40.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:01:40.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:40.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:40.006][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:01:40.007][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:01:40.008][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:40.009][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:40.010][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:01:40.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:01:40.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:40.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:40.020][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:01:40.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:01:40.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:40.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:40.023][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:01:40.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:01:40.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:40.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:40.027][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:01:40.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:01:40.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:40.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:40.031][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:01:40.032][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:01:40.032][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:40.033][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:40.034][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:01:40.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:01:40.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:40.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:40.044][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:40.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:40.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:40.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:40.048][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:40.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:40.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:40.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:40.051][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:40.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:40.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:40.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:40.055][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:40.056][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:40.057][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:40.058][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:40.059][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:40.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:40.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:40.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:40.069][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:40.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:40.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:40.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:40.072][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:40.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:40.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:40.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:40.076][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:40.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:40.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:40.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:40.080][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:40.081][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:40.082][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:40.086][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:40.087][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:40.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:40.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:40.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:40.097][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:01:40.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:01:40.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:40.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:40.101][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:01:40.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:01:40.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:40.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:40.104][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:01:40.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:01:40.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:40.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:40.108][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:01:40.109][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:01:40.110][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:40.110][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:40.111][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:01:40.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:01:40.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:40.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:40.121][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-26 16:01:40.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:01:40.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:40.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:40.125][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-26 16:01:40.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:01:40.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:40.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:40.128][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-26 16:01:40.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:01:40.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:40.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:40.132][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-26 16:01:40.133][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:01:40.134][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:40.135][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:40.136][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-26 16:01:40.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:01:40.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:40.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:40.145][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:01:40.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:01:40.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:40.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:40.149][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:01:40.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:01:40.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:40.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:40.153][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:01:40.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:01:40.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:40.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:40.156][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:01:40.157][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:01:40.158][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:40.159][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:40.160][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:01:40.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:01:40.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:40.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:40.170][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:01:40.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:01:40.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:40.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:40.173][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:01:40.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:01:40.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:40.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:40.177][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:01:40.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:01:40.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:40.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:40.181][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:01:40.182][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:01:40.182][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:40.183][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:40.184][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:01:40.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:01:40.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:40.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:40.194][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:01:40.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:01:40.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:40.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:40.197][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:01:40.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:01:40.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:40.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:40.201][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:01:40.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:01:40.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:40.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:40.205][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:01:40.206][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:01:40.207][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:40.207][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:40.208][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:01:40.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:01:40.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:40.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:40.218][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:01:40.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:01:40.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:40.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:40.222][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:01:40.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:01:40.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:40.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:40.225][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:01:40.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:01:40.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:40.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:40.229][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:01:40.230][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:01:40.231][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:40.232][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:40.233][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:01:40.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:01:40.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:40.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:40.242][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:40.270][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:40.271][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:40.272][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:40.276][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:01:40.277][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:01:40.277][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:40.278][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:40.282][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:01:40.283][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:01:40.284][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:40.285][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:40.288][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:01:40.289][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:01:40.290][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:40.291][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:40.295][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:01:40.296][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:01:40.297][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:40.297][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:40.301][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:01:40.302][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:01:40.303][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:40.304][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:40.307][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:40.309][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:40.309][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:40.310][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:40.314][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:40.315][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:40.316][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:40.317][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:40.320][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-26 16:01:40.321][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:01:40.322][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:40.323][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:40.327][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:01:40.328][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:01:40.329][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:40.330][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:40.333][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:01:40.334][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:01:40.335][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:40.336][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:40.351][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/bbs-3.22-bioc-longtests/meat/biodbChebi.Rcheck/biodbChebi/testref/entry-chebi-2528-content.xml".
biodb.DEBUG[2025-07-26 16:01:40.383][biodb$getFactory()$createEntryFromCo ...] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-26 16:01:40.384][biodb$getFactory()$createEntryFromCo ...] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-26 16:01:40.386][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:01:40.387][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:01:40.388][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:01:40.391][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:01:40.392][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:01:40.393][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:01:40.394][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:01:40.396][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:40.397][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:40.398][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:40.399][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:40.400][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:40.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:40.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:40.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:40.422][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:01:40.423][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:01:40.424][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:40.425][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:40.426][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:01:40.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:01:40.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:40.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:40.430][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:01:40.431][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:01:40.432][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:40.433][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:40.434][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:01:40.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:01:40.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:40.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:40.438][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:01:40.439][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:01:40.440][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:40.440][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:40.442][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:01:40.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:01:40.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:40.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:40.445][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:01:40.446][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:01:40.447][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:40.448][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:40.449][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:01:40.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:01:40.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:40.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:40.453][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:01:40.454][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:01:40.455][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:40.456][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:40.457][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:01:40.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:01:40.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:40.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:40.460][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-26 16:01:40.461][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:40.462][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:40.463][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:40.464][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-26 16:01:40.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:40.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:40.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:40.468][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:40.469][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:40.470][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:40.471][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:40.472][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:40.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:40.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:40.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:40.476][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:01:40.477][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:01:40.477][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:40.478][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:40.480][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:01:40.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:01:40.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:40.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:40.483][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-26 16:01:40.484][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:01:40.485][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:40.486][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:40.487][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-26 16:01:40.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:01:40.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:40.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:40.491][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:01:40.492][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:01:40.493][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:40.494][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:40.495][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:01:40.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:01:40.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:40.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:40.498][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:40.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:40.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:40.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:40.502][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:40.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:40.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:40.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:40.506][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:40.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:40.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:40.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:40.509][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:40.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:40.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:40.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:40.513][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:40.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:40.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:40.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:40.517][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:40.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:40.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:40.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:40.520][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:40.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:40.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:40.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:40.524][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:40.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:40.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:40.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:40.528][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:40.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:40.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:40.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:40.531][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:40.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:40.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:40.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:01:40.535][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 2528.
biodb.TRACE[2025-07-26 16:01:40.554][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:01:40.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:01:40.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:40.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:40.558][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:01:40.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:01:40.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:40.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:40.561][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:01:40.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:01:40.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:40.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:40.565][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:01:40.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:01:40.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:40.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:40.569][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:40.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:40.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:40.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:40.572][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:40.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:40.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:40.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:40.579][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-07-26 16:01:40.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-07-26 16:01:40.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:40.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:40.583][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-07-26 16:01:40.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-07-26 16:01:40.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:40.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:40.586][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-07-26 16:01:40.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-07-26 16:01:40.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:40.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:40.590][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-07-26 16:01:40.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-07-26 16:01:40.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:40.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:40.595][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:40.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:40.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:40.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:40.601][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:40.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:40.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:40.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:40.608][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:40.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:40.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:40.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:40.612][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:40.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:40.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:40.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:40.615][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:40.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:40.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:40.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:40.620][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:40.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:40.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:40.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:40.624][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:40.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:40.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:40.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:40.628][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:40.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:40.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:40.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:40.631][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:40.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:40.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:40.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:40.635][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:40.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:40.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:40.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:40.639][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:40.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:40.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:40.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:40.656][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:40.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:40.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:40.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:40.660][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:40.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:40.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:40.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:40.664][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:40.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:40.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:40.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:40.667][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:40.668][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:40.669][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:40.670][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:40.671][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:40.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:40.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:40.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:40.681][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:40.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:40.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:40.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:40.684][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:40.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:40.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:40.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:40.688][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:40.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:40.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:40.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:40.692][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:40.693][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:40.694][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:40.694][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:40.695][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:40.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:40.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:40.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:40.705][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:01:40.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:01:40.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:40.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:40.709][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:01:40.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:01:40.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:40.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:40.712][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:01:40.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:01:40.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:40.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:40.716][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:01:40.717][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:01:40.718][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:40.719][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:40.720][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:01:40.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:01:40.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:40.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:40.729][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:01:40.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:01:40.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:40.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:40.733][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:01:40.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:01:40.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:40.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:40.740][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:01:40.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:01:40.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:40.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:40.744][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:01:40.745][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:01:40.746][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:40.747][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:40.748][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:01:40.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:01:40.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:40.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:40.757][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-26 16:01:40.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:40.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:40.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:40.761][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:40.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:40.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:40.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:40.764][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:40.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:40.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:40.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:40.768][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-26 16:01:40.769][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:40.770][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:40.771][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:40.772][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-26 16:01:40.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:40.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:40.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:40.782][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:40.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:40.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:40.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:40.785][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:40.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:40.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:40.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:40.789][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:40.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:40.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:40.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:40.793][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:40.794][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:40.794][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:40.795][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:40.796][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:40.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:40.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:40.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:40.806][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:40.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:40.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:40.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:40.810][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:40.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:40.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:40.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:40.813][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:40.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:40.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:40.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:40.817][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:40.818][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:40.819][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:40.820][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:40.821][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:40.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:40.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:40.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:40.830][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:01:40.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:01:40.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:40.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:40.834][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:01:40.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:01:40.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:40.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:40.838][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:01:40.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:01:40.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:40.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:40.841][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:01:40.842][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:01:40.843][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:40.844][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:40.845][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:01:40.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:01:40.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:40.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:40.855][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-26 16:01:40.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:01:40.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:40.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:40.858][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-26 16:01:40.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:01:40.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:40.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:40.862][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-26 16:01:40.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:01:40.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:40.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:40.866][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-26 16:01:40.866][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:01:40.867][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:40.868][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:40.869][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-26 16:01:40.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:01:40.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:40.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:40.879][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:01:40.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:01:40.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:40.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:40.883][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:01:40.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:01:40.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:40.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:40.886][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:01:40.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:01:40.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:40.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:40.890][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:01:40.891][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:01:40.892][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:40.893][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:40.894][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:01:40.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:01:40.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:40.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:40.907][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:01:40.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:01:40.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:40.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:40.911][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:01:40.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:01:40.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:40.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:40.914][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:01:40.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:01:40.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:40.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:40.918][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:01:40.919][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:01:40.920][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:40.921][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:40.922][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:01:40.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:01:40.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:40.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:40.932][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:01:40.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:01:40.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:40.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:40.935][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:01:40.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:01:40.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:40.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:40.939][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:01:40.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:01:40.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:40.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:40.943][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:01:40.944][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:01:40.945][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:40.945][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:40.946][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:01:40.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:01:40.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:40.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:40.956][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:01:40.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:01:40.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:40.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:40.960][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:01:40.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:01:40.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:40.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:40.964][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:01:40.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:01:40.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:40.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:40.967][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:01:40.968][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:01:40.969][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:40.970][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:40.971][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:01:40.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:01:40.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:40.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:40.981][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:40.982][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:40.983][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:40.984][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:40.988][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:01:40.989][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:01:40.990][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:40.991][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:40.994][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:01:40.995][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:01:40.996][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:40.997][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:41.001][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:01:41.002][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:01:41.003][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:41.003][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:41.007][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:01:41.008][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:01:41.009][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:41.010][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:41.013][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:01:41.014][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:01:41.015][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:41.016][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:41.020][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:41.021][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:41.022][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:41.023][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:41.026][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:41.027][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:41.028][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:41.029][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:41.033][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-26 16:01:41.034][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:01:41.035][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:41.035][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:41.039][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:01:41.040][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:01:41.041][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:41.042][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:41.045][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:01:41.046][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:01:41.047][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:41.048][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:41.052][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/bbs-3.22-bioc-longtests/meat/biodbChebi.Rcheck/biodbChebi/testref/entry-chebi-7799-content.xml".
biodb.DEBUG[2025-07-26 16:01:41.053][biodb$getFactory()$createEntryFromCo ...] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-26 16:01:41.054][biodb$getFactory()$createEntryFromCo ...] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-26 16:01:41.056][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:01:41.060][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:01:41.061][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:01:41.065][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:01:41.066][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:01:41.067][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:01:41.067][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:01:41.070][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:41.071][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:41.071][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:41.072][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:41.073][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:41.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:41.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:41.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:41.077][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:01:41.078][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:01:41.079][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:41.080][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:41.081][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:01:41.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:01:41.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:41.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:41.085][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:01:41.086][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:01:41.086][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:41.087][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:41.088][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:01:41.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:01:41.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:41.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:41.092][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:01:41.093][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:01:41.094][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:41.095][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:41.096][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:01:41.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:01:41.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:41.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:41.100][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:01:41.101][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:01:41.102][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:41.102][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:41.104][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:01:41.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:01:41.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:41.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:41.107][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:01:41.108][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:01:41.109][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:41.110][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:41.111][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:01:41.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:01:41.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:41.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:41.115][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-26 16:01:41.116][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:41.117][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:41.117][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:41.119][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-26 16:01:41.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:41.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:41.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:41.122][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:41.123][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:41.124][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:41.125][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:41.126][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:41.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:41.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:41.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:41.130][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:01:41.131][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:01:41.132][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:41.133][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:41.134][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:01:41.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:01:41.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:41.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:41.138][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-26 16:01:41.139][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:01:41.139][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:41.140][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:41.141][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-26 16:01:41.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:01:41.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:41.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:41.145][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:01:41.146][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:01:41.147][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:41.148][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:41.149][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:01:41.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:01:41.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:41.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:41.153][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:41.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:41.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:41.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:41.156][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:41.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:41.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:41.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:41.160][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:41.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:41.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:41.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:41.163][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:41.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:41.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:41.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:41.167][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:41.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:41.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:41.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:41.171][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:41.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:41.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:41.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:41.174][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:41.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:41.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:41.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:41.178][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:41.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:41.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:41.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:41.182][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:41.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:41.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:41.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:41.185][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:41.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:41.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:41.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:01:41.189][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 7799.
biodb.TRACE[2025-07-26 16:01:41.191][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:01:41.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:01:41.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:41.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:41.195][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:01:41.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:01:41.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:41.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:41.198][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:01:41.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:01:41.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:41.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:41.202][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:01:41.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:01:41.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:41.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:41.206][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:41.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:41.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:41.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:41.209][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:41.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:41.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:41.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:41.213][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-07-26 16:01:41.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-07-26 16:01:41.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:41.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:41.217][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-07-26 16:01:41.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-07-26 16:01:41.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:41.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:41.220][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-07-26 16:01:41.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-07-26 16:01:41.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:41.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:41.227][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-07-26 16:01:41.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-07-26 16:01:41.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:41.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:41.232][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:41.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:41.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:41.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:41.239][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:41.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:41.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:41.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:41.245][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:41.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:41.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:41.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:41.249][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:41.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:41.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:41.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:41.253][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:41.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:41.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:41.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:41.257][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:41.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:41.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:41.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:41.261][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:41.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:41.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:41.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:41.265][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:41.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:41.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:41.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:41.269][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:41.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:41.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:41.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:41.272][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:41.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:41.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:41.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:41.276][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:41.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:41.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:41.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:41.284][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:41.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:41.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:41.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:41.288][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:41.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:41.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:41.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:41.291][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:41.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:41.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:41.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:41.295][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:41.296][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:41.297][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:41.298][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:41.299][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:41.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:41.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:41.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:41.308][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:01:41.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:01:41.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:41.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:41.312][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:01:41.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:01:41.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:41.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:41.316][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:01:41.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:01:41.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:41.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:41.319][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:01:41.320][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:01:41.321][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:41.322][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:41.323][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:01:41.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:01:41.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:41.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:41.333][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:01:41.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:01:41.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:41.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:41.336][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:01:41.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:01:41.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:41.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:41.340][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:01:41.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:01:41.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:41.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:41.344][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:01:41.345][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:01:41.346][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:41.346][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:41.347][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:01:41.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:01:41.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:41.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:41.357][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:01:41.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:01:41.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:41.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:41.361][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:01:41.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:01:41.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:41.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:41.364][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:01:41.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:01:41.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:41.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:41.368][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:01:41.369][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:01:41.370][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:41.371][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:41.372][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:01:41.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:01:41.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:41.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:41.381][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:01:41.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:01:41.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:41.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:41.389][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:01:41.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:01:41.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:41.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:41.392][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:01:41.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:01:41.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:41.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:41.396][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:01:41.397][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:01:41.398][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:41.399][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:41.400][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:01:41.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:01:41.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:41.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:41.409][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:41.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:41.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:41.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:41.413][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:41.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:41.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:41.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:41.416][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:41.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:41.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:41.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:41.420][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:41.421][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:41.422][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:41.423][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:41.424][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:41.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:41.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:41.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:41.434][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:41.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:41.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:41.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:41.437][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:41.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:41.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:41.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:41.441][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:41.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:41.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:41.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:41.445][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:41.446][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:41.447][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:41.447][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:41.448][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:41.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:41.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:41.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:41.458][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:01:41.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:01:41.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:41.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:41.462][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:01:41.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:01:41.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:41.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:41.466][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:01:41.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:01:41.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:41.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:41.469][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:01:41.470][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:01:41.471][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:41.472][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:41.473][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:01:41.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:01:41.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:41.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:41.483][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-26 16:01:41.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:01:41.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:41.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:41.486][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-26 16:01:41.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:01:41.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:41.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:41.490][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-26 16:01:41.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:01:41.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:41.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:41.494][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-26 16:01:41.495][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:01:41.495][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:41.496][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:41.497][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-26 16:01:41.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:01:41.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:41.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:41.507][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:01:41.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:01:41.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:41.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:41.511][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:01:41.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:01:41.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:41.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:41.514][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:01:41.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:01:41.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:41.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:41.518][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:01:41.519][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:01:41.520][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:41.521][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:41.522][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:01:41.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:01:41.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:41.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:41.532][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:01:41.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:01:41.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:41.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:41.535][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:01:41.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:01:41.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:41.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:41.539][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:01:41.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:01:41.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:41.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:41.543][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:01:41.544][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:01:41.548][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:41.549][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:41.550][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:01:41.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:01:41.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:41.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:41.560][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:41.561][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:41.562][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:41.563][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:41.566][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:01:41.567][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:01:41.568][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:41.569][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:41.573][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:01:41.574][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:01:41.575][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:41.576][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:41.579][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:01:41.580][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:01:41.581][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:41.582][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:41.586][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:01:41.587][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:01:41.588][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:41.589][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:41.592][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:01:41.593][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:01:41.594][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:41.595][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:41.599][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:41.600][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:41.601][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:41.602][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:41.605][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:41.606][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:41.607][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:41.608][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:41.612][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-26 16:01:41.613][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:01:41.614][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:41.614][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:41.618][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:01:41.619][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:01:41.620][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:41.621][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:41.624][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:01:41.626][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:01:41.626][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:41.627][ef$get] fields variable is a list.
biodb.INFO [2025-07-26 16:01:41.633][biodb::testThat]
biodb.INFO [2025-07-26 16:01:41.634][biodb::testThat] Running test function  test.rt.unit  (" RT unit is defined when there is an RT value. ").
biodb.INFO [2025-07-26 16:01:41.635][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-07-26 16:01:41.636][biodb::testThat]
biodb.DEBUG[2025-07-26 16:01:41.638][private$loadEntries] Creating entries from ids [3]: "15440, 2528, 7799".
biodb.DEBUG[2025-07-26 16:01:41.640][conn$getEntryContent] Get ChEBI entry content(s) for 3 id(s)...
fscache.INFO [2025-07-26 16:01:41.643][cch$loadContents] Load 3 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-26 16:01:41.650][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/15440.xml.
fscache.DEBUG[2025-07-26 16:01:41.654][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/2528.xml.
fscache.DEBUG[2025-07-26 16:01:41.657][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7799.xml.
biodb.DEBUG[2025-07-26 16:01:41.658][conn$getEntryContent] 3 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-26 16:01:41.659][self$createEntryFromContent] Creating ChEBI entries from 3 content(s).
biodb.DEBUG[2025-07-26 16:01:41.660][self$createEntryFromContent] Parsing 3 ChEBI entries.
biodb.DEBUG[2025-07-26 16:01:41.662][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:01:41.663][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:01:41.664][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:01:41.667][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:01:41.668][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:01:41.669][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:01:41.670][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:01:41.672][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:41.673][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:41.674][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:41.675][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:41.676][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:41.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:41.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:41.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:41.680][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:01:41.681][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:01:41.681][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:41.682][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:41.684][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:01:41.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:01:41.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:41.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:41.687][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:01:41.688][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:01:41.689][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:41.690][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:41.691][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:01:41.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:01:41.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:41.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:41.695][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:01:41.696][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:01:41.697][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:41.698][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:41.699][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:01:41.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:01:41.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:41.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:41.702][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:01:41.703][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:01:41.704][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:41.705][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:41.706][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:01:41.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:01:41.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:41.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:41.710][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:01:41.711][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:01:41.712][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:41.713][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:41.714][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:01:41.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:01:41.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:41.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:41.718][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-26 16:01:41.722][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:41.723][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:41.724][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:41.725][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-26 16:01:41.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:41.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:41.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:41.729][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:41.730][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:41.731][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:41.732][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:41.733][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:41.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:41.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:41.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:41.736][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:01:41.737][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:01:41.738][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:41.739][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:41.740][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:01:41.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:01:41.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:41.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:41.744][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-26 16:01:41.745][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:01:41.746][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:41.747][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:41.748][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-26 16:01:41.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:01:41.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:41.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:41.752][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:01:41.752][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:01:41.753][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:41.754][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:41.755][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:01:41.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:01:41.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:41.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:41.759][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:41.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:41.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:41.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:41.763][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:41.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:41.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:41.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:41.766][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:41.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:41.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:41.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:41.770][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:41.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:41.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:41.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:41.774][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:41.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:41.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:41.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:41.777][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:41.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:41.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:41.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:41.781][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:41.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:41.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:41.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:01:41.785][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:01:41.786][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:01:41.787][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:01:41.791][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:01:41.791][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:01:41.792][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:01:41.793][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:01:41.795][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:41.796][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:41.797][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:41.798][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:41.799][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:41.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:41.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:41.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:41.803][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:01:41.804][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:01:41.805][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:41.805][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:41.807][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:01:41.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:01:41.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:41.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:41.810][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:01:41.811][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:01:41.812][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:41.813][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:41.814][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:01:41.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:01:41.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:41.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:41.818][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:01:41.819][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:01:41.820][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:41.821][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:41.822][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:01:41.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:01:41.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:41.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:41.825][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:01:41.826][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:01:41.827][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:41.828][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:41.829][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:01:41.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:01:41.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:41.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:41.833][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:01:41.834][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:01:41.835][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:41.836][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:41.837][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:01:41.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:01:41.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:41.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:41.840][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-26 16:01:41.841][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:41.842][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:41.843][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:41.844][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-26 16:01:41.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:41.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:41.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:41.848][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:41.849][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:41.850][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:41.851][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:41.852][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:41.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:41.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:41.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:41.856][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:01:41.857][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:01:41.857][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:41.858][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:41.859][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:01:41.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:01:41.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:41.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:41.863][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-26 16:01:41.864][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:01:41.865][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:41.866][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:41.867][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-26 16:01:41.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:01:41.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:41.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:41.871][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:01:41.872][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:01:41.873][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:41.873][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:41.875][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:01:41.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:01:41.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:41.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:41.878][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:41.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:41.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:41.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:41.882][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:41.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:41.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:41.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:41.889][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:41.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:41.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:41.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:41.893][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:41.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:41.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:41.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:41.897][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:41.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:41.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:41.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:41.901][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:41.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:41.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:41.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:41.905][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:41.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:41.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:41.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:01:41.909][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:01:41.910][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:01:41.911][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:01:41.915][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:01:41.915][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:01:41.916][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:01:41.917][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:01:41.919][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:41.920][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:41.921][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:41.922][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:41.923][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:41.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:41.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:41.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:41.927][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:01:41.928][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:01:41.929][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:41.929][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:41.931][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:01:41.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:01:41.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:41.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:41.934][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:01:41.935][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:01:41.936][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:41.937][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:41.938][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:01:41.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:01:41.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:41.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:41.942][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:01:41.943][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:01:41.944][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:41.945][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:41.946][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:01:41.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:01:41.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:41.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:41.949][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:01:41.950][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:01:41.951][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:41.952][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:41.953][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:01:41.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:01:41.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:41.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:41.957][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:01:41.958][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:01:41.959][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:41.960][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:41.961][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:01:41.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:01:41.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:41.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:41.964][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-26 16:01:41.965][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:41.966][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:41.967][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:41.968][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-26 16:01:41.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:41.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:41.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:41.972][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:41.973][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:41.974][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:41.975][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:41.976][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:41.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:41.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:41.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:41.979][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:01:41.980][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:01:41.981][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:41.982][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:41.983][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:01:41.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:01:41.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:41.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:41.987][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-26 16:01:41.988][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:01:41.989][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:41.990][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:41.991][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-26 16:01:41.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:01:41.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:41.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:41.995][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:01:41.996][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:01:41.996][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:41.997][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:41.998][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:01:41.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:01:42.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:42.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:42.002][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:42.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:42.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:42.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:42.006][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:42.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:42.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:42.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:42.009][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:42.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:42.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:42.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:42.013][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:42.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:42.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:42.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:42.017][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:42.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:42.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:42.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:42.020][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:42.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:42.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:42.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:42.024][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:42.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:42.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:42.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:42.028][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:42.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:42.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:42.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:42.031][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:42.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:42.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:42.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:42.035][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:42.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:42.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:42.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:42.039][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:42.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:42.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:42.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:42.043][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:42.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:42.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:42.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:42.046][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:42.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:42.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:42.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:42.053][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:42.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:42.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:42.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:42.057][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:42.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:42.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:42.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:42.061][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:42.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:42.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:42.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:01:42.064][self$createEntryFromContent] Accession numbers: 15440, 2528, 7799.
biodb.TRACE[2025-07-26 16:01:42.065][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-07-26 16:01:42.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-07-26 16:01:42.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:42.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:42.069][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2025-07-26 16:01:42.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2025-07-26 16:01:42.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:42.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:42.072][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2025-07-26 16:01:42.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2025-07-26 16:01:42.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:42.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:42.079][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-07-26 16:01:42.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-07-26 16:01:42.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:42.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:42.083][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2025-07-26 16:01:42.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2025-07-26 16:01:42.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:42.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:42.087][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2025-07-26 16:01:42.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2025-07-26 16:01:42.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:42.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:42.093][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-07-26 16:01:42.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-07-26 16:01:42.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:42.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:42.097][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2025-07-26 16:01:42.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2025-07-26 16:01:42.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:42.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:42.101][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2025-07-26 16:01:42.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2025-07-26 16:01:42.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:42.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-07-26 16:01:42.110][biodb::testThat]
biodb.INFO [2025-07-26 16:01:42.111][biodb::testThat] Running test function  test.searchForEntries  (" We can search for an entry by searchable field ").
biodb.INFO [2025-07-26 16:01:42.112][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-07-26 16:01:42.113][biodb::testThat]
biodb.TRACE[2025-07-26 16:01:42.115][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:01:42.116][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:01:42.117][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:42.118][ef$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:01:42.119][function(conn, opt)] Testing searchForEntries() with entry "15440" and field "name".
biodb.TRACE[2025-07-26 16:01:42.141][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:01:42.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:01:42.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:42.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:42.144][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:01:42.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:01:42.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:42.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:42.148][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:01:42.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:01:42.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:42.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:01:42.154][function(conn, opt)] With value "squalene".
sched.DEBUG[2025-07-26 16:01:42.159][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/webservice?wsdl".
fscache.INFO [2025-07-26 16:01:42.177][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-07-26 16:01:42.183][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/a2ed8f44d213d85be0d7e9a0448c78ad.content.
sched.DEBUG[2025-07-26 16:01:42.184][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
sched.DEBUG[2025-07-26 16:01:42.201][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-07-26 16:01:42.232][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-07-26 16:01:42.236][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/80cdc67a2a6332dd4ceb98b7656194b9.content.
sched.DEBUG[2025-07-26 16:01:42.237][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-07-26 16:01:42.239][function(conn, opt)] With found IDs [1]: "15440".
biodb.TRACE[2025-07-26 16:01:42.249][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:42.250][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:42.251][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:42.252][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:42.252][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:42.253][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:42.254][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:42.255][ef$get] fields variable is a list.
biodb.INFO [2025-07-26 16:01:42.258][biodb::testThat]
biodb.INFO [2025-07-26 16:01:42.259][biodb::testThat] Running test function  test.searchByName  (" We can search for an entry by name. ").
biodb.INFO [2025-07-26 16:01:42.260][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-07-26 16:01:42.261][biodb::testThat]
biodb.TRACE[2025-07-26 16:01:42.282][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:01:42.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:01:42.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:42.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:42.285][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:01:42.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:01:42.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:42.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:42.289][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:01:42.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:01:42.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:42.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
sched.DEBUG[2025-07-26 16:01:42.341][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-07-26 16:01:42.347][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-07-26 16:01:42.350][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/80cdc67a2a6332dd4ceb98b7656194b9.content.
sched.DEBUG[2025-07-26 16:01:42.351][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.INFO [2025-07-26 16:01:42.364][biodb::testThat]
biodb.INFO [2025-07-26 16:01:42.365][biodb::testThat] Running test function  testEntryLoading  (" We can load an entry from the database. ").
biodb.INFO [2025-07-26 16:01:42.365][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-07-26 16:01:42.366][biodb::testThat]
biodb.TRACE[2025-07-26 16:01:42.374][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:01:42.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:01:42.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:42.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:42.378][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:01:42.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:01:42.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:42.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:42.381][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:01:42.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:01:42.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:42.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:42.385][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:01:42.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:01:42.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:42.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:42.389][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:42.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:42.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:42.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:42.392][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:42.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:42.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:42.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:42.396][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-07-26 16:01:42.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-07-26 16:01:42.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:42.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:42.400][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-07-26 16:01:42.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-07-26 16:01:42.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:42.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:42.403][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-07-26 16:01:42.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-07-26 16:01:42.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:42.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:42.407][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-07-26 16:01:42.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-07-26 16:01:42.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:42.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:42.419][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:01:42.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:01:42.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:42.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:42.423][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:01:42.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:01:42.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:42.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:42.426][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:01:42.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:01:42.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:42.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:42.430][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:01:42.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:01:42.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:42.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:42.433][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:42.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:42.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:42.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:42.437][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:42.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:42.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:42.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:42.441][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-07-26 16:01:42.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-07-26 16:01:42.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:42.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:42.444][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-07-26 16:01:42.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-07-26 16:01:42.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:42.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:42.448][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-07-26 16:01:42.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-07-26 16:01:42.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:42.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:42.452][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-07-26 16:01:42.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-07-26 16:01:42.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:42.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-07-26 16:01:42.460][biodb::testThat]
biodb.INFO [2025-07-26 16:01:42.461][biodb::testThat] Running test function  test.entry.page.url  (" We can get a URL pointing to the entry page. ").
biodb.INFO [2025-07-26 16:01:42.462][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-07-26 16:01:42.463][biodb::testThat]
biodb.INFO [2025-07-26 16:01:42.470][biodb::testThat]
biodb.INFO [2025-07-26 16:01:42.471][biodb::testThat] Running test function  test.entry.image.url  (" We can get a URL pointing to the entry image. ").
biodb.INFO [2025-07-26 16:01:42.472][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-07-26 16:01:42.473][biodb::testThat]
biodb.INFO [2025-07-26 16:01:42.479][biodb::testThat]
biodb.INFO [2025-07-26 16:01:42.479][biodb::testThat] Running test function  test.entry.page.url.download  (" The entry page URL can be downloaded. ").
biodb.INFO [2025-07-26 16:01:42.480][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-07-26 16:01:42.481][biodb::testThat]
biodb.DEBUG[2025-07-26 16:01:42.484][function(conn, opt)] Trying to download "https://www.ebi.ac.uk/chebi/searchId.do?chebiId=15440".
sched.TRACE[2025-07-26 16:01:43.422][try_get_rcurl_content] Using RCurl package for sending request (https://www.ebi.ac.uk/chebi/searchId.do?chebiId=15440).
biodb.INFO [2025-07-26 16:01:44.669][biodb::testThat]
biodb.INFO [2025-07-26 16:01:44.676][biodb::testThat] Running test function  test.entry.image.url.download  (" The entry image URL can be downloaded. ").
biodb.INFO [2025-07-26 16:01:44.677][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-07-26 16:01:44.679][biodb::testThat]
biodb.TRACE[2025-07-26 16:01:44.686][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:01:44.687][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:01:44.688][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:44.689][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:44.691][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:44.692][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:44.693][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:44.694][ef$get] fields variable is a list.
biodb.INFO [2025-07-26 16:01:44.696][biodb::testThat]
biodb.INFO [2025-07-26 16:01:44.697][biodb::testThat] Running test function  test.searchCompound  (" We can search for a compound ").
biodb.INFO [2025-07-26 16:01:44.698][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-07-26 16:01:44.699][biodb::testThat]
biodb.TRACE[2025-07-26 16:01:44.708][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:01:44.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:01:44.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:44.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:44.712][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:01:44.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:01:44.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:44.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:44.716][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:01:44.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:01:44.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:44.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
sched.DEBUG[2025-07-26 16:01:44.805][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-07-26 16:01:44.807][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-07-26 16:01:44.810][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/80cdc67a2a6332dd4ceb98b7656194b9.content.
sched.DEBUG[2025-07-26 16:01:44.811][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
sched.DEBUG[2025-07-26 16:01:44.890][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-07-26 16:01:44.892][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-07-26 16:01:44.895][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/80cdc67a2a6332dd4ceb98b7656194b9.content.
sched.DEBUG[2025-07-26 16:01:44.896][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.TRACE[2025-07-26 16:01:44.907][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-07-26 16:01:44.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-07-26 16:01:44.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:44.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:44.914][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:44.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:44.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:44.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:44.918][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:44.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:44.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:44.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:44.922][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:44.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:44.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:44.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:44.925][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:44.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:44.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:44.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:44.929][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:44.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:44.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:44.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
sched.DEBUG[2025-07-26 16:01:44.939][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-07-26 16:01:44.941][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-07-26 16:01:44.943][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/8fc54eee7e982ce554bee8000d8203f7.content.
sched.DEBUG[2025-07-26 16:01:44.944][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-07-26 16:01:44.946][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:01:44.947][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:01:44.948][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:01:44.951][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:01:44.952][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:01:44.953][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:01:44.954][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-26 16:01:44.955][private$loadEntries] Creating entries from ids [1]: "192288".
biodb.DEBUG[2025-07-26 16:01:45.002][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-26 16:01:45.003][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-26 16:01:45.006][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/192288.xml.
biodb.DEBUG[2025-07-26 16:01:45.007][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-26 16:01:45.009][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-26 16:01:45.010][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-26 16:01:45.011][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:01:45.012][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:01:45.013][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:01:45.017][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:01:45.018][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:01:45.018][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:01:45.019][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:01:45.022][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:45.023][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:45.023][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:45.024][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:45.025][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:45.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:45.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:45.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:45.029][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:01:45.030][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:01:45.031][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:45.032][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:45.033][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:01:45.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:01:45.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:45.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:45.037][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:01:45.038][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:01:45.039][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:45.040][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:45.041][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:01:45.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:01:45.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:45.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:45.045][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:01:45.046][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:01:45.047][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:45.047][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:45.048][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:01:45.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:01:45.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:45.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:45.052][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:01:45.053][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:01:45.054][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:45.055][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:45.056][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:01:45.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:01:45.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:45.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:45.060][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:01:45.061][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:01:45.062][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:45.062][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:45.064][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-26 16:01:45.065][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:45.065][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:45.066][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:45.067][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-26 16:01:45.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:45.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:45.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:45.071][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:45.072][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:45.073][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:45.074][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:45.075][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:45.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:45.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:45.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:45.079][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:01:45.080][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:01:45.081][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:45.081][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:45.083][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:01:45.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:01:45.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:45.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:45.086][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-26 16:01:45.087][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:01:45.088][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:45.089][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:45.090][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-26 16:01:45.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:01:45.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:45.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:45.094][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:01:45.095][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:01:45.096][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:45.097][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:45.098][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:01:45.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:01:45.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:45.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:45.105][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:45.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:45.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:45.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:45.109][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:45.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:45.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:45.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:45.113][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:45.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:45.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:45.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:45.116][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:45.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:45.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:45.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:45.120][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:45.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:45.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:45.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:45.124][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:45.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:45.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:45.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:45.127][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:45.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:45.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:45.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:45.131][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:45.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:45.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:45.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:45.135][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:45.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:45.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:45.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:45.138][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:45.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:45.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:45.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:01:45.142][self$createEntryFromContent] Accession numbers: 192288.
biodb.TRACE[2025-07-26 16:01:45.151][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:45.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:45.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:45.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:45.155][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:45.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:45.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:45.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:45.158][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:45.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:45.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:45.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
sched.DEBUG[2025-07-26 16:01:45.163][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-07-26 16:01:45.165][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-07-26 16:01:45.167][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/6def615835d7c1dfccd5a5f135bd2f9d.content.
sched.DEBUG[2025-07-26 16:01:45.168][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-07-26 16:01:45.182][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:01:45.183][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:01:45.184][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:01:45.188][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:01:45.189][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:01:45.189][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:01:45.190][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:01:45.191][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:45.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:45.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:45.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:45.195][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:45.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:45.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:45.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:45.199][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:45.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:45.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:45.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:01:45.202][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:01:45.203][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:01:45.204][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:01:45.208][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:01:45.209][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:01:45.210][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:01:45.211][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-26 16:01:45.212][private$loadEntries] Creating entries from ids [1]: "209892".
biodb.DEBUG[2025-07-26 16:01:45.213][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-26 16:01:45.214][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-26 16:01:45.217][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/209892.xml.
biodb.DEBUG[2025-07-26 16:01:45.218][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-26 16:01:45.219][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-26 16:01:45.220][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-26 16:01:45.222][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:01:45.223][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:01:45.224][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:01:45.228][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:01:45.228][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:01:45.229][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:01:45.230][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:01:45.232][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:45.233][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:45.234][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:45.235][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:45.236][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:45.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:45.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:45.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:45.240][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:01:45.241][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:01:45.242][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:45.243][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:45.248][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:01:45.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:01:45.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:45.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:45.252][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:01:45.252][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:01:45.253][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:45.254][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:45.256][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:01:45.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:01:45.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:45.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:45.259][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:01:45.260][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:01:45.261][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:45.262][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:45.263][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:01:45.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:01:45.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:45.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:45.267][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:01:45.268][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:01:45.269][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:45.269][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:45.271][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:01:45.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:01:45.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:45.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:45.274][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:01:45.275][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:01:45.276][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:45.277][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:45.278][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-26 16:01:45.279][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:45.280][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:45.281][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:45.282][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-26 16:01:45.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:45.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:45.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:45.286][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:45.287][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:45.288][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:45.289][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:45.290][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:45.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:45.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:45.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:45.294][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:01:45.295][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:01:45.295][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:45.296][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:45.298][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:01:45.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:01:45.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:45.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:45.301][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-26 16:01:45.302][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:01:45.303][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:45.304][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:45.305][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-26 16:01:45.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:01:45.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:45.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:45.309][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:01:45.310][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:01:45.311][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:45.312][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:45.313][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:01:45.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:01:45.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:45.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:45.316][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:45.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:45.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:45.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:45.320][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:45.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:45.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:45.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:45.324][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:45.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:45.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:45.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:45.327][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:45.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:45.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:45.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:45.331][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:45.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:45.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:45.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:45.335][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:45.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:45.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:45.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:45.338][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:45.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:45.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:45.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:45.342][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:45.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:45.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:45.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:45.346][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:45.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:45.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:45.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:45.350][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:45.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:45.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:45.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:01:45.353][self$createEntryFromContent] Accession numbers: 209892.
biodb.TRACE[2025-07-26 16:01:45.354][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:45.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:45.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:45.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:45.358][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:45.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:45.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:45.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:45.362][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:45.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:45.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:45.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
sched.DEBUG[2025-07-26 16:01:45.380][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-07-26 16:01:45.382][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-07-26 16:01:45.386][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/80cdc67a2a6332dd4ceb98b7656194b9.content.
sched.DEBUG[2025-07-26 16:01:45.387][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-07-26 16:01:45.389][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:01:45.390][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:01:45.395][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:01:45.398][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:01:45.399][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:01:45.400][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:01:45.401][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:01:45.402][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:45.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:45.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:45.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:45.406][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:45.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:45.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:45.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:45.409][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:45.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:45.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:45.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:01:45.413][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:01:45.414][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:01:45.414][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:01:45.418][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:01:45.419][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:01:45.420][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:01:45.421][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-26 16:01:45.422][private$loadEntries] Creating entries from ids [1]: "26747".
biodb.DEBUG[2025-07-26 16:01:45.422][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-26 16:01:45.424][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-26 16:01:45.427][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/26747.xml.
biodb.DEBUG[2025-07-26 16:01:45.428][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-26 16:01:45.429][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-26 16:01:45.430][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-26 16:01:45.432][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:01:45.432][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:01:45.433][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:01:45.437][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:01:45.438][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:01:45.439][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:01:45.440][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:01:45.442][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:45.443][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:45.443][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:45.444][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:45.445][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:45.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:45.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:45.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:45.449][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:01:45.450][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:01:45.451][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:45.452][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:45.453][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:01:45.454][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:01:45.455][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:45.456][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:45.457][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:01:45.458][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:01:45.459][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:45.460][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:45.461][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:01:45.462][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:01:45.463][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:45.464][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:45.465][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:01:45.466][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:01:45.467][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:45.467][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:45.468][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-26 16:01:45.469][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:45.470][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:45.471][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:45.472][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:45.473][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:45.474][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:45.475][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:45.476][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:01:45.477][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:01:45.478][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:45.479][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:45.480][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:01:45.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:01:45.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:45.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:45.484][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-26 16:01:45.485][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:01:45.486][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:45.486][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:45.488][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-26 16:01:45.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:01:45.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:45.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:45.491][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:01:45.492][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:01:45.493][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:45.494][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:45.495][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:45.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:45.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:45.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:45.499][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:45.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:45.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:45.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:45.503][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:45.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:45.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:45.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:45.506][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:45.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:45.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:45.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:45.510][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:45.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:45.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:45.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:45.514][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:45.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:45.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:45.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:45.517][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:45.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:45.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:45.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:45.521][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:45.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:45.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:45.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:45.525][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:45.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:45.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:45.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:45.528][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:45.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:45.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:45.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:01:45.532][self$createEntryFromContent] Accession numbers: 26747.
biodb.TRACE[2025-07-26 16:01:45.533][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:45.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:45.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:45.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:45.541][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:45.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:45.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:45.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:45.544][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:45.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:45.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:45.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:45.548][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:45.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:45.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:45.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:45.552][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:45.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:45.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:45.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:01:45.555][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:01:45.556][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:01:45.557][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:01:45.561][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:01:45.562][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:01:45.563][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:01:45.564][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-26 16:01:45.565][private$loadEntries] Creating entries from ids [1]: "59285".
biodb.DEBUG[2025-07-26 16:01:45.566][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-26 16:01:45.567][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-26 16:01:45.571][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/59285.xml.
biodb.DEBUG[2025-07-26 16:01:45.572][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-26 16:01:45.573][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-26 16:01:45.574][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-26 16:01:45.575][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:01:45.576][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:01:45.577][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:01:45.581][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:01:45.582][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:01:45.583][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:01:45.583][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:01:45.586][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:45.587][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:45.588][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:45.588][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:45.590][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:45.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:45.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:45.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:45.593][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:01:45.594][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:01:45.595][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:45.596][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:45.597][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:01:45.598][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:01:45.599][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:45.600][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:45.601][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:01:45.602][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:01:45.603][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:45.604][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:45.605][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:01:45.606][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:01:45.607][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:45.608][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:45.609][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:01:45.610][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:01:45.611][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:45.612][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:45.613][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-26 16:01:45.614][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:45.615][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:45.615][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:45.617][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:45.618][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:45.618][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:45.619][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:45.620][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:01:45.621][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:01:45.622][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:45.623][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:45.625][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:01:45.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:01:45.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:45.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:45.628][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-26 16:01:45.629][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:01:45.630][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:45.631][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:45.632][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-26 16:01:45.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:01:45.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:45.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:45.642][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:01:45.643][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:01:45.644][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:45.645][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:45.647][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:45.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:45.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:45.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:45.651][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:45.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:45.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:45.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:45.655][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:45.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:45.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:45.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:45.659][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:45.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:45.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:45.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:45.664][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:45.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:45.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:45.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:45.668][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:45.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:45.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:45.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:45.672][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:45.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:45.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:45.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:45.676][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:45.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:45.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:45.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:45.680][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:45.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:45.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:45.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:45.684][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:45.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:45.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:45.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:01:45.689][self$createEntryFromContent] Accession numbers: 59285.
biodb.TRACE[2025-07-26 16:01:45.690][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:45.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:45.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:45.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:45.694][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:45.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:45.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:45.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:45.729][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:45.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:45.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:45.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:45.733][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:45.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:45.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:45.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:45.737][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:45.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:45.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:45.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:01:45.741][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:01:45.742][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:01:45.743][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:01:45.747][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:01:45.748][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:01:45.749][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:01:45.750][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-26 16:01:45.751][private$loadEntries] Creating entries from ids [1]: "75174".
biodb.DEBUG[2025-07-26 16:01:45.752][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-26 16:01:45.754][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-26 16:01:45.758][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/75174.xml.
biodb.DEBUG[2025-07-26 16:01:45.759][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-26 16:01:45.760][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-26 16:01:45.761][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-26 16:01:45.763][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:01:45.764][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:01:45.765][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:01:45.769][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:01:45.770][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:01:45.771][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:01:45.772][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:01:45.774][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:45.775][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:45.776][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:45.777][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:45.778][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:45.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:45.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:45.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:45.782][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:01:45.783][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:01:45.784][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:45.785][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:45.786][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:01:45.787][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:01:45.788][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:45.789][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:45.790][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:01:45.792][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:01:45.792][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:45.793][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:45.795][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:01:45.796][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:01:45.796][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:45.797][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:45.799][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:01:45.800][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:01:45.800][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:45.801][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:45.803][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-26 16:01:45.804][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:45.805][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:45.806][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:45.807][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:45.808][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:45.809][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:45.810][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:45.811][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:01:45.812][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:01:45.813][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:45.814][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:45.815][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:01:45.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:01:45.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:45.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:45.819][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-26 16:01:45.820][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:01:45.821][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:45.822][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:45.823][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-26 16:01:45.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:01:45.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:45.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:45.827][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:01:45.828][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:01:45.829][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:45.830][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:45.831][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:45.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:45.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:45.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:45.835][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:45.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:45.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:45.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:45.839][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:45.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:45.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:45.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:45.842][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:45.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:45.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:45.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:45.846][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:45.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:45.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:45.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:45.850][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:45.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:45.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:45.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:45.853][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:45.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:45.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:45.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:45.857][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:45.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:45.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:45.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:45.861][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:45.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:45.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:45.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:45.865][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:45.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:45.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:45.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:01:45.869][self$createEntryFromContent] Accession numbers: 75174.
biodb.TRACE[2025-07-26 16:01:45.870][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:45.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:45.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:45.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:45.873][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:45.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:45.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:45.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:45.877][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:45.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:45.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:45.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:45.885][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:45.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:45.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:45.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:45.889][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:45.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:45.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:45.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:01:45.892][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:01:45.893][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:01:45.894][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:01:45.898][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:01:45.899][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:01:45.900][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:01:45.900][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-26 16:01:45.901][private$loadEntries] Creating entries from ids [1]: "15441".
biodb.DEBUG[2025-07-26 16:01:45.902][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-26 16:01:45.904][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-26 16:01:45.909][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/15441.xml.
biodb.DEBUG[2025-07-26 16:01:45.910][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-26 16:01:45.911][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-26 16:01:45.912][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-26 16:01:45.913][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:01:45.914][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:01:45.915][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:01:45.919][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:01:45.920][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:01:45.921][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:01:45.921][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:01:45.924][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:45.925][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:45.925][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:45.926][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:45.927][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:45.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:45.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:45.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:45.931][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:01:45.932][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:01:45.933][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:45.934][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:45.935][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:01:45.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:01:45.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:45.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:45.939][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:01:45.940][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:01:45.941][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:45.942][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:45.943][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:01:45.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:01:45.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:45.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:45.947][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:01:45.948][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:01:45.948][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:45.949][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:45.950][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:01:45.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:01:45.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:45.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:45.954][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:01:45.955][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:01:45.956][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:45.957][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:45.958][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:01:45.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:01:45.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:45.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:45.962][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:01:45.963][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:01:45.964][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:45.965][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:45.966][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:01:45.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:01:45.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:45.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:45.969][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-26 16:01:45.970][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:45.971][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:45.972][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:45.973][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-26 16:01:45.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:45.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:45.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:45.977][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:45.978][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:45.979][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:45.980][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:45.981][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:45.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:45.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:45.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:45.984][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:01:45.985][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:01:45.986][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:45.987][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:45.989][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:01:45.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:01:45.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:45.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:45.992][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-26 16:01:45.993][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:01:45.994][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:45.995][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:45.996][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-26 16:01:45.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:01:45.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:45.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:46.000][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:01:46.001][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:01:46.002][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:46.003][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:46.004][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:01:46.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:01:46.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:46.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:46.008][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:46.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:46.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:46.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:46.011][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:46.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:46.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:46.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:46.015][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:46.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:46.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:46.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:46.019][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:46.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:46.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:46.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:46.022][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:46.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:46.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:46.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:46.026][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:46.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:46.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:46.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:46.030][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:46.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:46.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:46.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:46.038][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:46.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:46.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:46.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:46.041][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:46.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:46.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:46.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:46.045][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:46.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:46.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:46.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:01:46.048][self$createEntryFromContent] Accession numbers: 15441.
biodb.TRACE[2025-07-26 16:01:46.049][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:46.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:46.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:46.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:46.053][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:46.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:46.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:46.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:46.057][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:46.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:46.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:46.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:01:46.060][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:01:46.061][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:01:46.062][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:01:46.066][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:01:46.067][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:01:46.067][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:01:46.068][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-26 16:01:46.069][private$loadEntries] Creating entries from ids [1]: "15442".
biodb.DEBUG[2025-07-26 16:01:46.070][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-26 16:01:46.072][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-26 16:01:46.076][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/15442.xml.
biodb.DEBUG[2025-07-26 16:01:46.077][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-26 16:01:46.078][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-26 16:01:46.079][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-26 16:01:46.081][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:01:46.082][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:01:46.082][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:01:46.086][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:01:46.087][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:01:46.088][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:01:46.089][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:01:46.091][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:46.092][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:46.093][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:46.094][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:46.095][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:46.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:46.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:46.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:46.099][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:01:46.100][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:01:46.100][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:46.101][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:46.102][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:01:46.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:01:46.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:46.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:46.106][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:01:46.107][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:01:46.108][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:46.109][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:46.110][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:01:46.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:01:46.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:46.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:46.114][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:01:46.115][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:01:46.116][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:46.117][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:46.118][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:01:46.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:01:46.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:46.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:46.122][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:01:46.123][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:01:46.123][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:46.124][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:46.125][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:01:46.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:01:46.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:46.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:46.129][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:01:46.130][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:01:46.131][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:46.132][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:46.133][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:01:46.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:01:46.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:46.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:46.137][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-26 16:01:46.138][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:46.139][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:46.140][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:46.141][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-26 16:01:46.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:46.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:46.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:46.144][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:46.145][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:46.146][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:46.147][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:46.148][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:46.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:46.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:46.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:46.152][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:01:46.153][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:01:46.154][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:46.155][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:46.156][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:01:46.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:01:46.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:46.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:46.160][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-26 16:01:46.161][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:01:46.162][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:46.163][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:46.164][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-26 16:01:46.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:01:46.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:46.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:46.167][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:01:46.168][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:01:46.169][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:46.170][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:46.171][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:01:46.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:01:46.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:46.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:46.175][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:46.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:46.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:46.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:46.179][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:46.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:46.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:46.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:46.186][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:46.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:46.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:46.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:46.190][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:46.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:46.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:46.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:46.194][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:46.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:46.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:46.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:46.197][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:46.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:46.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:46.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:46.201][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:46.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:46.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:46.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:46.205][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:46.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:46.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:46.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:46.208][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:46.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:46.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:46.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:46.212][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:46.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:46.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:46.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:01:46.215][self$createEntryFromContent] Accession numbers: 15442.
biodb.TRACE[2025-07-26 16:01:46.216][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:46.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:46.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:46.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:46.220][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:46.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:46.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:46.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:46.224][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:46.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:46.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:46.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:01:46.227][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:01:46.228][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:01:46.229][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:01:46.233][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:01:46.234][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:01:46.235][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:01:46.236][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-26 16:01:46.237][private$loadEntries] Creating entries from ids [1]: "57310".
biodb.DEBUG[2025-07-26 16:01:46.238][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-26 16:01:46.239][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-26 16:01:46.243][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/57310.xml.
biodb.DEBUG[2025-07-26 16:01:46.244][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-26 16:01:46.245][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-26 16:01:46.246][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-26 16:01:46.248][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:01:46.248][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:01:46.249][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:01:46.253][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:01:46.254][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:01:46.255][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:01:46.256][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:01:46.258][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:46.259][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:46.260][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:46.261][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:46.262][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:46.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:46.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:46.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:46.266][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:01:46.267][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:01:46.268][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:46.269][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:46.270][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:01:46.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:01:46.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:46.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:46.273][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:01:46.274][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:01:46.275][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:46.276][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:46.277][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:01:46.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:01:46.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:46.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:46.281][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:01:46.282][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:01:46.283][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:46.284][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:46.285][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:01:46.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:01:46.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:46.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:46.289][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:01:46.290][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:01:46.291][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:46.291][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:46.293][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:01:46.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:01:46.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:46.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:46.296][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:01:46.297][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:01:46.298][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:46.299][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:46.300][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-26 16:01:46.301][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:46.302][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:46.303][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:46.304][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-26 16:01:46.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:46.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:46.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:46.308][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:46.309][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:46.310][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:46.311][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:46.312][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:46.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:46.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:46.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:46.316][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:01:46.317][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:01:46.317][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:46.318][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:46.320][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:01:46.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:01:46.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:46.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:46.323][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-26 16:01:46.324][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:01:46.325][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:46.326][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:46.327][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-26 16:01:46.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:01:46.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:46.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:46.335][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:01:46.336][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:01:46.337][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:46.338][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:46.339][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:01:46.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:01:46.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:46.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:46.343][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:46.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:46.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:46.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:46.346][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:46.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:46.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:46.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:46.350][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:46.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:46.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:46.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:46.354][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:46.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:46.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:46.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:46.357][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:46.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:46.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:46.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:46.361][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:46.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:46.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:46.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:46.364][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:46.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:46.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:46.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:46.368][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:46.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:46.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:46.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:46.372][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:46.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:46.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:46.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:46.376][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:46.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:46.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:46.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:01:46.379][self$createEntryFromContent] Accession numbers: 57310.
biodb.TRACE[2025-07-26 16:01:46.380][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:46.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:46.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:46.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:46.384][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:46.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:46.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:46.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:46.388][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:46.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:46.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:46.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:01:46.391][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:01:46.392][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:01:46.393][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:01:46.397][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:01:46.398][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:01:46.399][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:01:46.400][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-26 16:01:46.401][private$loadEntries] Creating entries from ids [1]: "66216".
biodb.DEBUG[2025-07-26 16:01:46.402][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-26 16:01:46.403][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-26 16:01:46.407][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/66216.xml.
biodb.DEBUG[2025-07-26 16:01:46.408][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-26 16:01:46.409][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-26 16:01:46.410][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-26 16:01:46.412][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:01:46.413][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:01:46.413][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:01:46.417][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:01:46.418][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:01:46.419][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:01:46.420][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:01:46.422][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:46.423][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:46.424][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:46.425][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:46.426][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:46.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:46.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:46.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:46.430][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:01:46.431][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:01:46.432][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:46.433][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:46.434][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:01:46.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:01:46.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:46.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:46.438][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:01:46.439][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:01:46.440][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:46.440][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:46.442][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:01:46.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:01:46.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:46.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:46.445][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:01:46.446][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:01:46.447][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:46.448][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:46.449][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:01:46.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:01:46.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:46.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:46.453][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:01:46.454][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:01:46.455][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:46.456][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:46.457][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:01:46.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:01:46.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:46.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:46.461][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:01:46.462][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:01:46.462][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:46.463][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:46.464][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-26 16:01:46.465][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:46.466][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:46.467][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:46.468][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-26 16:01:46.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:46.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:46.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:46.472][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:46.473][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:46.474][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:46.475][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:46.476][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:46.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:46.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:46.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:46.480][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:01:46.481][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:01:46.485][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:46.486][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:46.488][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:01:46.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:01:46.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:46.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:46.491][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-26 16:01:46.492][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:01:46.493][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:46.494][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:46.495][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-26 16:01:46.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:01:46.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:46.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:46.499][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:01:46.500][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:01:46.501][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:46.501][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:46.503][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:01:46.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:01:46.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:46.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:46.506][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:46.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:46.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:46.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:46.510][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:46.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:46.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:46.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:46.514][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:46.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:46.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:46.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:46.517][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:46.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:46.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:46.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:46.521][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:46.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:46.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:46.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:46.525][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:46.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:46.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:46.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:46.528][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:46.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:46.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:46.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:46.532][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:46.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:46.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:46.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:46.536][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:46.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:46.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:46.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:46.539][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:46.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:46.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:46.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:01:46.543][self$createEntryFromContent] Accession numbers: 66216.
biodb.TRACE[2025-07-26 16:01:46.544][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:46.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:46.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:46.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:46.548][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:46.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:46.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:46.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:46.551][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:46.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:46.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:46.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:01:46.555][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:01:46.556][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:01:46.557][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:01:46.561][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:01:46.562][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:01:46.563][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:01:46.563][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-26 16:01:46.564][private$loadEntries] Creating entries from ids [1]: "70860".
biodb.DEBUG[2025-07-26 16:01:46.565][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-26 16:01:46.567][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-26 16:01:46.570][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/70860.xml.
biodb.DEBUG[2025-07-26 16:01:46.571][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-26 16:01:46.572][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-26 16:01:46.573][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-26 16:01:46.575][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:01:46.576][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:01:46.577][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:01:46.580][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:01:46.581][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:01:46.582][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:01:46.583][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:01:46.585][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:46.586][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:46.587][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:46.588][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:46.589][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:46.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:46.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:46.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:46.593][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:01:46.594][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:01:46.595][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:46.595][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:46.597][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:01:46.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:01:46.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:46.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:46.600][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:01:46.601][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:01:46.602][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:46.603][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:46.604][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:01:46.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:01:46.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:46.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:46.608][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:01:46.609][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:01:46.610][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:46.611][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:46.612][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:01:46.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:01:46.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:46.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:46.616][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:01:46.617][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:01:46.618][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:46.618][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:46.619][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:01:46.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:01:46.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:46.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:46.623][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:01:46.624][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:01:46.625][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:46.626][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:46.627][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-26 16:01:46.628][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:46.633][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:46.634][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:46.635][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-26 16:01:46.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:46.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:46.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:46.639][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:46.640][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:46.640][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:46.641][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:46.642][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:46.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:46.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:46.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:46.646][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:01:46.647][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:01:46.648][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:46.649][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:46.650][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:01:46.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:01:46.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:46.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:46.654][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-26 16:01:46.655][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:01:46.655][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:46.656][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:46.657][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-26 16:01:46.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:01:46.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:46.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:46.661][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:01:46.662][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:01:46.663][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:46.664][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:46.665][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:01:46.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:01:46.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:46.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:46.669][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:46.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:46.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:46.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:46.672][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:46.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:46.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:46.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:46.676][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:46.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:46.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:46.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:46.680][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:46.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:46.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:46.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:46.683][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:46.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:46.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:46.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:46.687][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:46.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:46.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:46.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:46.691][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:46.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:46.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:46.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:46.694][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:46.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:46.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:46.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:46.698][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:46.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:46.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:46.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:46.702][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:46.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:46.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:46.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:01:46.705][self$createEntryFromContent] Accession numbers: 70860.
biodb.TRACE[2025-07-26 16:01:46.707][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:46.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:46.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:46.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:46.710][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:46.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:46.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:46.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:46.714][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:46.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:46.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:46.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:01:46.717][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:01:46.718][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:01:46.719][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:01:46.723][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:01:46.724][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:01:46.725][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:01:46.726][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-26 16:01:46.727][private$loadEntries] Creating entries from ids [1]: "70861".
biodb.DEBUG[2025-07-26 16:01:46.728][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-26 16:01:46.729][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-26 16:01:46.733][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/70861.xml.
biodb.DEBUG[2025-07-26 16:01:46.734][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-26 16:01:46.735][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-26 16:01:46.736][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-26 16:01:46.737][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:01:46.738][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:01:46.739][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:01:46.743][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:01:46.744][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:01:46.745][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:01:46.746][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:01:46.748][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:46.749][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:46.750][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:46.751][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:46.752][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:46.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:46.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:46.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:46.755][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:01:46.756][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:01:46.757][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:46.758][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:46.759][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:01:46.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:01:46.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:46.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:46.763][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:01:46.764][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:01:46.765][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:46.766][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:46.767][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:01:46.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:01:46.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:46.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:46.771][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:01:46.772][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:01:46.773][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:46.773][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:46.774][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:01:46.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:01:46.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:46.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:46.782][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:01:46.783][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:01:46.784][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:46.785][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:46.786][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:01:46.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:01:46.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:46.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:46.790][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:01:46.791][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:01:46.792][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:46.792][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:46.794][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-26 16:01:46.794][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:46.795][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:46.796][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:46.797][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-26 16:01:46.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:46.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:46.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:46.801][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:46.802][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:46.803][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:46.804][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:46.805][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:46.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:46.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:46.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:46.808][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:01:46.809][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:01:46.810][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:46.811][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:46.812][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:01:46.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:01:46.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:46.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:46.816][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-26 16:01:46.817][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:01:46.818][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:46.819][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:46.820][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-26 16:01:46.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:01:46.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:46.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:46.824][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:01:46.825][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:01:46.826][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:46.826][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:46.827][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:01:46.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:01:46.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:46.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:46.831][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:46.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:46.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:46.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:46.835][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:46.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:46.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:46.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:46.839][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:46.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:46.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:46.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:46.842][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:46.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:46.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:46.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:46.846][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:46.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:46.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:46.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:46.850][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:46.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:46.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:46.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:46.853][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:46.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:46.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:46.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:46.857][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:46.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:46.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:46.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:46.861][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:46.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:46.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:46.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:46.865][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:46.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:46.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:46.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:01:46.868][self$createEntryFromContent] Accession numbers: 70861.
biodb.TRACE[2025-07-26 16:01:46.869][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:46.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:46.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:46.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:46.873][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:46.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:46.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:46.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:46.877][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:46.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:46.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:46.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:01:46.880][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:01:46.881][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:01:46.882][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:01:46.886][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:01:46.887][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:01:46.888][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:01:46.889][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-26 16:01:46.890][private$loadEntries] Creating entries from ids [1]: "78662".
biodb.DEBUG[2025-07-26 16:01:46.891][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-26 16:01:46.892][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-26 16:01:46.896][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/78662.xml.
biodb.DEBUG[2025-07-26 16:01:46.897][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-26 16:01:46.898][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-26 16:01:46.899][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-26 16:01:46.901][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:01:46.902][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:01:46.903][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:01:46.907][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:01:46.908][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:01:46.908][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:01:46.909][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:01:46.911][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:46.912][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:46.913][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:46.914][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:46.915][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:46.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:46.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:46.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:46.919][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:01:46.920][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:01:46.921][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:46.922][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:46.923][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:01:46.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:01:46.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:46.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:46.931][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:01:46.932][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:01:46.933][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:46.934][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:46.935][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:01:46.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:01:46.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:46.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:46.939][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:01:46.940][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:01:46.941][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:46.941][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:46.942][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:01:46.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:01:46.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:46.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:46.946][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:01:46.947][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:01:46.948][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:46.949][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:46.950][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:01:46.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:01:46.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:46.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:46.954][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:01:46.955][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:01:46.955][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:46.956][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:46.957][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-26 16:01:46.958][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:46.959][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:46.960][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:46.961][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-26 16:01:46.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:46.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:46.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:46.965][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:46.966][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:46.967][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:46.968][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:46.969][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:46.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:46.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:46.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:46.973][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:01:46.974][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:01:46.974][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:46.975][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:46.977][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:01:46.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:01:46.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:46.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:46.980][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-26 16:01:46.981][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:01:46.982][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:46.983][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:46.984][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-26 16:01:46.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:01:46.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:46.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:46.988][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:01:46.989][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:01:46.990][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:46.991][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:46.992][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:01:46.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:01:46.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:46.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:46.996][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:46.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:46.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:46.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:46.999][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:47.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:47.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:47.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:47.003][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:47.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:47.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:47.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:47.007][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:47.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:47.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:47.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:47.010][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:47.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:47.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:47.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:47.014][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:47.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:47.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:47.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:47.018][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:47.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:47.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:47.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:47.021][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:47.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:47.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:47.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:47.025][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:47.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:47.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:47.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:47.029][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:47.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:47.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:47.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:01:47.032][self$createEntryFromContent] Accession numbers: 78662.
biodb.TRACE[2025-07-26 16:01:47.033][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:47.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:47.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:47.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:47.037][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:47.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:47.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:47.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:47.041][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:47.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:47.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:47.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:01:47.045][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:01:47.046][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:01:47.046][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:01:47.051][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:01:47.051][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:01:47.052][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:01:47.053][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-26 16:01:47.054][private$loadEntries] Creating entries from ids [1]: "85084".
biodb.DEBUG[2025-07-26 16:01:47.055][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-26 16:01:47.056][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-26 16:01:47.059][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/85084.xml.
biodb.DEBUG[2025-07-26 16:01:47.060][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-26 16:01:47.061][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-26 16:01:47.062][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-26 16:01:47.063][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:01:47.064][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:01:47.065][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:01:47.069][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:01:47.070][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:01:47.071][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:01:47.072][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:01:47.077][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:47.079][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:47.079][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:47.080][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:47.081][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:47.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:47.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:47.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:47.085][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:01:47.086][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:01:47.087][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:47.088][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:47.089][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:01:47.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:01:47.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:47.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:47.093][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:01:47.094][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:01:47.094][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:47.095][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:47.096][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:01:47.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:01:47.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:47.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:47.100][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:01:47.101][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:01:47.102][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:47.103][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:47.104][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:01:47.105][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:01:47.106][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:47.107][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:47.108][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:01:47.109][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:01:47.110][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:47.110][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:47.111][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-26 16:01:47.112][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:47.113][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:47.114][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:47.115][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-26 16:01:47.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:47.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:47.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:47.119][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:47.120][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:47.121][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:47.122][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:47.123][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:47.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:47.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:47.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:47.127][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:01:47.128][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:01:47.129][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:47.129][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:47.131][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:01:47.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:01:47.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:47.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:47.134][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-26 16:01:47.135][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:01:47.136][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:47.137][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:47.138][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-26 16:01:47.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:01:47.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:47.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:47.142][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:01:47.143][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:01:47.144][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:47.145][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:47.146][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:47.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:47.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:47.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:47.150][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:47.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:47.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:47.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:47.153][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:47.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:47.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:47.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:47.157][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:47.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:47.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:47.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:47.161][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:47.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:47.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:47.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:47.164][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:47.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:47.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:47.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:47.168][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:47.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:47.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:47.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:47.172][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:47.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:47.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:47.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:47.175][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:47.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:47.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:47.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:47.179][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:47.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:47.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:47.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:01:47.183][self$createEntryFromContent] Accession numbers: 85084.
biodb.TRACE[2025-07-26 16:01:47.184][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:47.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:47.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:47.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:47.188][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:47.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:47.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:47.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:47.191][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:47.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:47.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:47.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:01:47.195][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:01:47.196][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:01:47.197][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:01:47.201][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:01:47.202][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:01:47.203][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:01:47.203][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-26 16:01:47.204][private$loadEntries] Creating entries from ids [1]: "85086".
biodb.DEBUG[2025-07-26 16:01:47.205][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-26 16:01:47.207][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-26 16:01:47.209][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/85086.xml.
biodb.DEBUG[2025-07-26 16:01:47.210][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-26 16:01:47.211][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-26 16:01:47.212][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-26 16:01:47.214][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:01:47.215][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:01:47.215][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:01:47.219][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:01:47.224][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:01:47.225][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:01:47.226][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:01:47.228][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:47.229][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:47.230][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:47.231][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:47.232][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:47.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:47.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:47.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:47.235][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:01:47.236][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:01:47.237][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:47.238][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:47.239][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:01:47.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:01:47.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:47.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:47.243][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:01:47.244][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:01:47.245][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:47.246][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:47.247][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:01:47.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:01:47.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:47.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:47.250][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:01:47.251][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:01:47.252][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:47.253][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:47.254][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:01:47.255][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:01:47.256][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:47.257][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:47.258][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:01:47.259][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:01:47.260][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:47.261][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:47.262][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-26 16:01:47.263][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:47.264][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:47.265][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:47.266][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-26 16:01:47.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:47.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:47.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:47.270][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:47.271][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:47.271][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:47.272][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:47.273][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:47.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:47.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:47.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:47.277][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:01:47.278][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:01:47.279][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:47.280][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:47.281][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:01:47.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:01:47.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:47.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:47.285][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-26 16:01:47.286][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:01:47.287][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:47.288][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:47.289][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-26 16:01:47.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:01:47.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:47.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:47.292][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:01:47.293][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:01:47.294][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:47.295][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:47.296][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:47.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:47.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:47.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:47.300][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:47.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:47.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:47.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:47.304][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:47.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:47.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:47.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:47.307][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:47.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:47.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:47.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:47.311][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:47.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:47.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:47.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:47.315][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:47.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:47.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:47.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:47.318][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:47.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:47.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:47.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:47.322][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:47.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:47.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:47.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:47.326][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:47.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:47.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:47.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:47.330][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:47.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:47.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:47.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:01:47.333][self$createEntryFromContent] Accession numbers: 85086.
biodb.TRACE[2025-07-26 16:01:47.334][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:47.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:47.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:47.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:47.338][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:47.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:47.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:47.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:47.342][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:47.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:47.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:47.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:01:47.346][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:01:47.346][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:01:47.347][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:01:47.351][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:01:47.352][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:01:47.353][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:01:47.354][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-26 16:01:47.355][private$loadEntries] Creating entries from ids [1]: "88123".
biodb.DEBUG[2025-07-26 16:01:47.356][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-26 16:01:47.357][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-26 16:01:47.361][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/88123.xml.
biodb.DEBUG[2025-07-26 16:01:47.362][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-26 16:01:47.363][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-26 16:01:47.364][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-26 16:01:47.365][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:01:47.366][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:01:47.367][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:01:47.375][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:01:47.376][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:01:47.377][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:01:47.378][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:01:47.380][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:47.381][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:47.381][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:47.382][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:47.383][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:47.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:47.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:47.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:47.387][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:01:47.388][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:01:47.389][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:47.390][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:47.391][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:01:47.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:01:47.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:47.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:47.395][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:01:47.396][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:01:47.396][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:47.397][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:47.398][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:01:47.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:01:47.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:47.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:47.402][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:01:47.403][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:01:47.404][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:47.405][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:47.406][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:01:47.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:01:47.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:47.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:47.410][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:01:47.411][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:01:47.412][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:47.412][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:47.414][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:01:47.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:01:47.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:47.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:47.417][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:01:47.418][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:01:47.419][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:47.420][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:47.421][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-26 16:01:47.422][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:47.423][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:47.424][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:47.425][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-26 16:01:47.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:47.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:47.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:47.429][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:47.430][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:47.431][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:47.432][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:47.433][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:47.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:47.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:47.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:47.436][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:01:47.437][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:01:47.438][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:47.439][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:47.440][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:01:47.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:01:47.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:47.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:47.444][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-26 16:01:47.445][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:01:47.446][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:47.447][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:47.448][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-26 16:01:47.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:01:47.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:47.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:47.452][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:01:47.453][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:01:47.454][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:47.455][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:47.456][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:01:47.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:01:47.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:47.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:47.460][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:47.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:47.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:47.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:47.463][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:47.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:47.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:47.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:47.467][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:47.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:47.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:47.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:47.471][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:47.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:47.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:47.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:47.474][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:47.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:47.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:47.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:47.478][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:47.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:47.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:47.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:47.482][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:47.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:47.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:47.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:47.486][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:47.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:47.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:47.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:47.489][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:47.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:47.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:47.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:47.493][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:47.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:47.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:47.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:01:47.497][self$createEntryFromContent] Accession numbers: 88123.
biodb.TRACE[2025-07-26 16:01:47.498][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:47.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:47.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:47.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:47.502][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:47.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:47.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:47.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:47.505][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:47.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:47.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:47.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:01:47.509][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:01:47.510][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:01:47.511][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:01:47.519][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:01:47.520][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:01:47.521][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:01:47.522][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-26 16:01:47.523][private$loadEntries] Creating entries from ids [1]: "134117".
biodb.DEBUG[2025-07-26 16:01:47.524][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-26 16:01:47.525][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-26 16:01:47.529][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/134117.xml.
biodb.DEBUG[2025-07-26 16:01:47.530][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-26 16:01:47.531][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-26 16:01:47.532][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-26 16:01:47.534][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:01:47.535][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:01:47.535][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:01:47.539][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:01:47.540][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:01:47.541][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:01:47.542][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:01:47.544][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:47.545][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:47.546][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:47.547][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:47.548][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:47.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:47.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:47.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:47.551][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:01:47.552][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:01:47.553][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:47.554][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:47.555][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:01:47.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:01:47.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:47.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:47.559][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:01:47.560][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:01:47.561][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:47.562][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:47.563][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:01:47.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:01:47.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:47.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:47.567][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:01:47.568][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:01:47.569][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:47.569][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:47.571][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:01:47.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:01:47.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:47.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:47.574][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:01:47.575][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:01:47.576][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:47.577][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:47.578][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:01:47.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:01:47.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:47.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:47.582][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:01:47.583][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:01:47.584][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:47.585][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:47.586][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-26 16:01:47.587][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:47.588][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:47.588][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:47.590][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-26 16:01:47.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:47.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:47.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:47.593][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:47.594][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:47.595][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:47.596][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:47.597][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:47.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:47.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:47.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:47.601][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:01:47.602][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:01:47.603][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:47.604][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:47.605][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:01:47.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:01:47.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:47.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:47.609][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-26 16:01:47.610][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:01:47.610][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:47.611][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:47.612][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-26 16:01:47.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:01:47.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:47.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:47.616][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:01:47.617][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:01:47.618][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:47.619][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:47.620][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:01:47.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:01:47.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:47.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:47.624][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:47.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:47.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:47.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:47.628][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:47.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:47.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:47.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:47.631][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:47.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:47.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:47.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:47.635][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:47.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:47.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:47.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:47.639][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:47.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:47.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:47.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:47.642][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:47.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:47.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:47.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:47.646][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:47.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:47.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:47.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:47.650][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:47.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:47.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:47.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:47.654][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:47.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:47.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:47.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:47.657][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:47.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:47.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:47.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:01:47.661][self$createEntryFromContent] Accession numbers: 134117.
biodb.TRACE[2025-07-26 16:01:47.666][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:47.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:47.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:47.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:47.670][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:47.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:47.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:47.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:47.674][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:47.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:47.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:47.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:01:47.678][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:01:47.679][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:01:47.680][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:01:47.684][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:01:47.685][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:01:47.686][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:01:47.687][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-26 16:01:47.688][private$loadEntries] Creating entries from ids [1]: "138307".
biodb.DEBUG[2025-07-26 16:01:47.689][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-26 16:01:47.690][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-26 16:01:47.694][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/138307.xml.
biodb.DEBUG[2025-07-26 16:01:47.695][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-26 16:01:47.696][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-26 16:01:47.697][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-26 16:01:47.699][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:01:47.699][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:01:47.700][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:01:47.704][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:01:47.705][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:01:47.706][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:01:47.707][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:01:47.709][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:47.710][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:47.711][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:47.712][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:47.713][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:47.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:47.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:47.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:47.716][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:01:47.717][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:01:47.718][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:47.719][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:47.720][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:01:47.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:01:47.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:47.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:47.724][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:01:47.725][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:01:47.726][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:47.727][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:47.728][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:01:47.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:01:47.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:47.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:47.732][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:01:47.733][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:01:47.734][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:47.734][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:47.736][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:01:47.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:01:47.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:47.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:47.739][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:01:47.740][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:01:47.741][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:47.742][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:47.743][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:01:47.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:01:47.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:47.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:47.747][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:01:47.748][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:01:47.749][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:47.750][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:47.751][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-26 16:01:47.752][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:47.753][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:47.753][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:47.755][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-26 16:01:47.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:47.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:47.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:47.758][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:47.759][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:47.760][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:47.761][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:47.762][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:47.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:47.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:47.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:47.766][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:01:47.767][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:01:47.768][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:47.769][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:47.770][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:01:47.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:01:47.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:47.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:47.774][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-26 16:01:47.775][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:01:47.776][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:47.777][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:47.778][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-26 16:01:47.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:01:47.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:47.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:47.782][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:01:47.783][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:01:47.784][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:47.784][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:47.786][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:01:47.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:01:47.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:47.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:47.789][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:47.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:47.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:47.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:47.793][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:47.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:47.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:47.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:47.797][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:47.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:47.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:47.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:47.800][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:47.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:47.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:47.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:47.804][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:47.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:47.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:47.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:47.808][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:47.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:47.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:47.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:47.816][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:47.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:47.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:47.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:47.820][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:47.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:47.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:47.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:47.823][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:47.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:47.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:47.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:47.827][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:47.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:47.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:47.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:01:47.830][self$createEntryFromContent] Accession numbers: 138307.
biodb.TRACE[2025-07-26 16:01:47.831][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:47.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:47.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:47.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:47.835][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:47.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:47.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:47.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:47.839][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:47.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:47.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:47.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:01:47.842][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:01:47.843][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:01:47.844][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:01:47.848][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:01:47.849][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:01:47.850][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:01:47.850][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-26 16:01:47.852][private$loadEntries] Creating entries from ids [1]: "176803".
biodb.DEBUG[2025-07-26 16:01:47.852][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-26 16:01:47.854][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-26 16:01:47.858][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/176803.xml.
biodb.DEBUG[2025-07-26 16:01:47.859][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-26 16:01:47.860][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-26 16:01:47.861][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-26 16:01:47.862][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:01:47.863][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:01:47.864][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:01:47.868][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:01:47.869][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:01:47.870][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:01:47.871][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:01:47.873][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:47.874][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:47.875][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:47.875][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:47.877][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:47.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:47.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:47.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:47.880][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:01:47.881][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:01:47.882][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:47.883][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:47.884][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:01:47.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:01:47.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:47.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:47.888][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:01:47.889][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:01:47.890][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:47.891][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:47.892][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:01:47.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:01:47.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:47.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:47.896][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:01:47.897][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:01:47.897][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:47.898][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:47.899][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:01:47.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:01:47.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:47.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:47.903][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:01:47.904][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:01:47.905][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:47.906][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:47.907][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:01:47.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:01:47.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:47.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:47.911][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:01:47.912][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:01:47.913][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:47.913][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:47.915][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-26 16:01:47.916][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:47.916][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:47.917][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:47.918][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-26 16:01:47.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:47.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:47.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:47.922][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:47.923][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:47.924][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:47.925][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:47.926][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:47.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:47.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:47.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:47.930][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:01:47.931][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:01:47.932][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:47.933][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:47.934][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:01:47.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:01:47.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:47.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:47.938][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-26 16:01:47.939][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:01:47.940][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:47.940][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:47.941][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-26 16:01:47.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:01:47.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:47.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:47.945][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:01:47.946][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:01:47.947][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:47.948][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:47.949][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:01:47.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:01:47.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:47.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:47.953][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:47.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:47.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:47.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:47.956][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:47.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:47.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:47.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:47.964][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:47.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:47.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:47.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:47.968][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:47.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:47.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:47.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:47.972][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:47.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:47.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:47.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:47.975][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:47.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:47.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:47.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:47.979][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:47.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:47.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:47.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:47.983][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:47.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:47.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:47.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:47.986][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:47.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:47.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:47.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:47.990][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:47.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:47.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:47.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:01:47.994][self$createEntryFromContent] Accession numbers: 176803.
biodb.TRACE[2025-07-26 16:01:47.995][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:47.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:47.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:47.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:47.998][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:47.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:48.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:48.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:48.002][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:48.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:48.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:48.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:01:48.006][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:01:48.007][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:01:48.007][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:01:48.012][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:01:48.012][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:01:48.013][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:01:48.014][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-26 16:01:48.015][private$loadEntries] Creating entries from ids [1]: "176962".
biodb.DEBUG[2025-07-26 16:01:48.016][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-26 16:01:48.017][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-26 16:01:48.021][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/176962.xml.
biodb.DEBUG[2025-07-26 16:01:48.022][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-26 16:01:48.023][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-26 16:01:48.024][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-26 16:01:48.026][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:01:48.027][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:01:48.028][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:01:48.032][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:01:48.033][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:01:48.034][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:01:48.034][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:01:48.037][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:48.038][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:48.039][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:48.039][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:48.041][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:48.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:48.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:48.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:48.044][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:01:48.045][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:01:48.046][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:48.047][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:48.048][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:01:48.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:01:48.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:48.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:48.052][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:01:48.053][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:01:48.054][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:48.055][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:48.056][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:01:48.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:01:48.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:48.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:48.060][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:01:48.061][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:01:48.062][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:48.063][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:48.064][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:01:48.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:01:48.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:48.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:48.067][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:01:48.068][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:01:48.069][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:48.070][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:48.071][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:01:48.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:01:48.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:48.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:48.075][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:01:48.076][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:01:48.077][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:48.078][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:48.079][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-26 16:01:48.080][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:48.081][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:48.082][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:48.083][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-26 16:01:48.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:48.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:48.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:48.087][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:48.088][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:48.089][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:48.089][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:48.091][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:48.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:48.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:48.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:48.094][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:01:48.095][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:01:48.096][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:48.097][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:48.098][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:01:48.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:01:48.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:48.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:48.102][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-26 16:01:48.103][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:01:48.104][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:48.105][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:48.106][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-26 16:01:48.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:01:48.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:48.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:48.114][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:01:48.115][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:01:48.116][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:48.116][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:48.117][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:01:48.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:01:48.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:48.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:48.121][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:48.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:48.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:48.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:48.125][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:48.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:48.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:48.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:48.128][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:48.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:48.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:48.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:48.132][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:48.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:48.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:48.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:48.136][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:48.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:48.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:48.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:48.139][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:48.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:48.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:48.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:48.143][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:48.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:48.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:48.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:48.147][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:48.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:48.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:48.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:48.150][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:48.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:48.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:48.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:48.154][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:48.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:48.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:48.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:01:48.158][self$createEntryFromContent] Accession numbers: 176962.
biodb.TRACE[2025-07-26 16:01:48.159][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:48.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:48.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:48.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:48.162][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:48.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:48.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:48.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:48.166][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:48.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:48.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:48.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:01:48.170][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:01:48.171][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:01:48.171][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:01:48.176][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:01:48.176][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:01:48.177][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:01:48.178][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-26 16:01:48.179][private$loadEntries] Creating entries from ids [1]: "198655".
biodb.DEBUG[2025-07-26 16:01:48.180][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-26 16:01:48.181][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-26 16:01:48.185][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/198655.xml.
biodb.DEBUG[2025-07-26 16:01:48.186][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-26 16:01:48.187][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-26 16:01:48.188][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-26 16:01:48.189][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:01:48.190][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:01:48.191][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:01:48.195][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:01:48.196][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:01:48.197][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:01:48.197][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:01:48.199][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:48.200][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:48.201][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:48.202][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:48.203][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:48.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:48.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:48.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:48.207][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:01:48.208][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:01:48.209][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:48.210][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:48.211][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:01:48.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:01:48.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:48.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:48.215][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:01:48.216][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:01:48.217][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:48.218][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:48.219][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:01:48.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:01:48.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:48.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:48.223][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:01:48.224][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:01:48.224][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:48.225][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:48.226][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:01:48.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:01:48.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:48.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:48.230][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:01:48.231][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:01:48.232][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:48.233][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:48.234][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:01:48.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:01:48.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:48.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:48.238][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:01:48.239][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:01:48.240][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:48.241][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:48.242][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-26 16:01:48.243][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:48.244][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:48.244][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:48.246][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-26 16:01:48.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:48.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:48.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:48.249][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:48.250][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:48.251][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:48.252][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:48.257][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:48.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:48.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:48.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:48.261][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:01:48.262][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:01:48.263][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:48.264][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:48.265][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:01:48.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:01:48.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:48.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:48.269][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-26 16:01:48.270][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:01:48.271][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:48.272][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:48.273][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-26 16:01:48.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:01:48.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:48.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:48.277][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:01:48.278][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:01:48.279][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:48.280][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:48.281][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:01:48.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:01:48.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:48.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:48.285][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:48.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:48.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:48.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:48.289][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:48.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:48.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:48.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:48.293][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:48.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:48.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:48.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:48.297][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:48.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:48.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:48.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:48.301][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:48.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:48.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:48.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:48.305][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:48.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:48.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:48.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:48.308][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:48.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:48.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:48.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:48.312][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:48.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:48.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:48.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:48.316][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:48.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:48.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:48.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:48.319][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:48.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:48.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:48.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:01:48.323][self$createEntryFromContent] Accession numbers: 198655.
biodb.TRACE[2025-07-26 16:01:48.324][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:48.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:48.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:48.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:48.328][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:48.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:48.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:48.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:48.331][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:48.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:48.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:48.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:01:48.335][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:01:48.336][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:01:48.337][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:01:48.341][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:01:48.342][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:01:48.343][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:01:48.343][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-26 16:01:48.344][private$loadEntries] Creating entries from ids [1]: "215045".
biodb.DEBUG[2025-07-26 16:01:48.345][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-26 16:01:48.347][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-26 16:01:48.350][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/215045.xml.
biodb.DEBUG[2025-07-26 16:01:48.351][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-26 16:01:48.352][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-26 16:01:48.353][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-26 16:01:48.355][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:01:48.356][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:01:48.356][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:01:48.360][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:01:48.361][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:01:48.362][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:01:48.363][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:01:48.365][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:48.366][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:48.367][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:48.368][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:48.369][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:48.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:48.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:48.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:48.373][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:01:48.374][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:01:48.374][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:48.375][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:48.377][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:01:48.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:01:48.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:48.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:48.380][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:01:48.381][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:01:48.382][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:48.383][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:48.384][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:01:48.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:01:48.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:48.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:48.388][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:01:48.389][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:01:48.390][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:48.391][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:48.392][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:01:48.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:01:48.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:48.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:48.396][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:01:48.397][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:01:48.397][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:48.398][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:48.399][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:01:48.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:01:48.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:48.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:48.407][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:01:48.408][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:01:48.409][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:48.410][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:48.411][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-26 16:01:48.412][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:48.413][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:48.414][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:48.415][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-26 16:01:48.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:48.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:48.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:48.419][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:48.420][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:48.420][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:48.421][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:48.422][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:48.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:48.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:48.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:48.426][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:01:48.427][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:01:48.428][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:48.429][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:48.430][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:01:48.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:01:48.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:48.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:48.434][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-26 16:01:48.435][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:01:48.436][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:48.436][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:48.437][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-26 16:01:48.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:01:48.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:48.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:48.441][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:01:48.442][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:01:48.443][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:48.444][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:48.445][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:01:48.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:01:48.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:48.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:48.449][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:48.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:48.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:48.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:48.453][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:48.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:48.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:48.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:48.456][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:48.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:48.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:48.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:48.460][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:48.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:48.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:48.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:48.464][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:48.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:48.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:48.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:48.467][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:48.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:48.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:48.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:48.471][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:48.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:48.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:48.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:48.475][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:48.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:48.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:48.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:48.478][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:48.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:48.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:48.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:48.482][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:48.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:48.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:48.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:01:48.486][self$createEntryFromContent] Accession numbers: 215045.
biodb.TRACE[2025-07-26 16:01:48.487][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:48.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:48.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:48.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:48.490][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:48.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:48.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:48.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:48.494][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:48.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:48.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:48.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
sched.DEBUG[2025-07-26 16:01:48.513][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-07-26 16:01:48.515][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-07-26 16:01:48.518][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/80cdc67a2a6332dd4ceb98b7656194b9.content.
sched.DEBUG[2025-07-26 16:01:48.519][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-07-26 16:01:48.522][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:01:48.523][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:01:48.523][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:01:48.527][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:01:48.528][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:01:48.529][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:01:48.530][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:01:48.531][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:48.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:48.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:48.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:48.534][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:48.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:48.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:48.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:48.538][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:48.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:48.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:48.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:01:48.542][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:01:48.543][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:01:48.543][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:01:48.551][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:01:48.552][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:01:48.553][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:01:48.554][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:01:48.555][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:48.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:48.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:48.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:48.559][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:48.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:48.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:48.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:48.562][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:48.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:48.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:48.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:48.566][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:48.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:48.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:48.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:48.570][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:48.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:48.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:48.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:01:48.573][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:01:48.574][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:01:48.575][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:01:48.579][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:01:48.580][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:01:48.581][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:01:48.581][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:01:48.582][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:48.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:48.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:48.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:48.586][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:48.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:48.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:48.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:48.590][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:48.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:48.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:48.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:48.594][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:48.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:48.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:48.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:48.598][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:48.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:48.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:48.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:01:48.601][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:01:48.602][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:01:48.603][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:01:48.607][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:01:48.608][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:01:48.609][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:01:48.609][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:01:48.611][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:48.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:48.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:48.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:48.614][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:48.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:48.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:48.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:48.618][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:48.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:48.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:48.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:48.622][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:48.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:48.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:48.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:48.626][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:48.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:48.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:48.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:01:48.629][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:01:48.630][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:01:48.631][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:01:48.635][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:01:48.636][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:01:48.637][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:01:48.638][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:01:48.639][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:48.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:48.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:48.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:48.642][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:48.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:48.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:48.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:48.646][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:48.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:48.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:48.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:01:48.650][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:01:48.651][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:01:48.652][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:01:48.656][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:01:48.657][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:01:48.657][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:01:48.658][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:01:48.659][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:48.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:48.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:48.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:48.663][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:48.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:48.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:48.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:48.667][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:48.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:48.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:48.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:01:48.671][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:01:48.671][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:01:48.672][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:01:48.676][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:01:48.677][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:01:48.678][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:01:48.679][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:01:48.680][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:48.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:48.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:48.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:48.683][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:48.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:48.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:48.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:48.687][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:48.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:48.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:48.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:01:48.695][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:01:48.696][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:01:48.696][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:01:48.700][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:01:48.701][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:01:48.702][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:01:48.703][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:01:48.704][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:48.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:48.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:48.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:48.707][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:48.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:48.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:48.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:48.711][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:48.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:48.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:48.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:01:48.715][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:01:48.716][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:01:48.716][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:01:48.720][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:01:48.721][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:01:48.722][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:01:48.723][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:01:48.724][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:48.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:48.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:48.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:48.727][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:48.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:48.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:48.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:48.731][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:48.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:48.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:48.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:01:48.735][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:01:48.736][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:01:48.736][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:01:48.740][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:01:48.741][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:01:48.742][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:01:48.743][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:01:48.744][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:48.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:48.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:48.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:48.748][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:48.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:48.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:48.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:48.751][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:48.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:48.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:48.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:01:48.755][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:01:48.756][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:01:48.756][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:01:48.760][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:01:48.761][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:01:48.762][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:01:48.763][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:01:48.764][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:48.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:48.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:48.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:48.768][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:48.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:48.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:48.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:48.771][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:48.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:48.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:48.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:01:48.775][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:01:48.776][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:01:48.776][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:01:48.780][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:01:48.781][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:01:48.782][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:01:48.783][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:01:48.784][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:48.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:48.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:48.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:48.787][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:48.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:48.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:48.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:48.791][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:48.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:48.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:48.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:01:48.795][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:01:48.796][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:01:48.796][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:01:48.800][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:01:48.801][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:01:48.802][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:01:48.803][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:01:48.804][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:48.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:48.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:48.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:48.808][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:48.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:48.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:48.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:48.811][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:48.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:48.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:48.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:01:48.815][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:01:48.816][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:01:48.817][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:01:48.820][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:01:48.821][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:01:48.822][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:01:48.823][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:01:48.824][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:48.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:48.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:48.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:48.828][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:48.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:48.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:48.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:48.838][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:48.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:48.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:48.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:01:48.842][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:01:48.843][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:01:48.844][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:01:48.847][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:01:48.848][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:01:48.849][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:01:48.850][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:01:48.851][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:48.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:48.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:48.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:48.854][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:48.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:48.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:48.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:48.858][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:48.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:48.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:48.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:01:48.862][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:01:48.862][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:01:48.863][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:01:48.867][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:01:48.868][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:01:48.869][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:01:48.870][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:01:48.871][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:48.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:48.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:48.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:48.874][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:48.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:48.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:48.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:48.878][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:48.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:48.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:48.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:01:48.882][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:01:48.883][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:01:48.883][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:01:48.887][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:01:48.888][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:01:48.889][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:01:48.890][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:01:48.891][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:48.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:48.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:48.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:48.894][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:48.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:48.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:48.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:48.898][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:48.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:48.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:48.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:01:48.902][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:01:48.903][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:01:48.903][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:01:48.907][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:01:48.908][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:01:48.909][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:01:48.910][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:01:48.911][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:48.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:48.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:48.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:48.915][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:48.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:48.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:48.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:48.918][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:48.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:48.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:48.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:01:48.922][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:01:48.923][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:01:48.924][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:01:48.927][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:01:48.928][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:01:48.929][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:01:48.930][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:01:48.931][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:48.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:48.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:48.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:48.935][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:48.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:48.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:48.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:48.938][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:48.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:48.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:48.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:01:48.942][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:01:48.943][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:01:48.944][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:01:48.948][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:01:48.949][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:01:48.950][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:01:48.950][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:01:48.952][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:48.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:48.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:48.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:48.955][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:48.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:48.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:48.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:48.959][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:48.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:48.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:48.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:48.974][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:48.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:48.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:48.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:48.982][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:48.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:48.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:48.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:48.986][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:48.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:48.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:48.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:48.990][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:48.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:48.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:48.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:48.994][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:48.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:48.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:48.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
sched.DEBUG[2025-07-26 16:01:49.020][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39124*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-07-26 16:01:49.022][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-07-26 16:01:49.024][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/63dc67d905e130c19900bd338bad7ba9.content.
sched.DEBUG[2025-07-26 16:01:49.025][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
sched.DEBUG[2025-07-26 16:01:49.028][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39125*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-07-26 16:01:49.030][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-07-26 16:01:49.033][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/287cac4c6e727656d926f26e3952924c.content.
sched.DEBUG[2025-07-26 16:01:49.034][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-07-26 16:01:49.036][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:01:49.037][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:01:49.038][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:01:49.042][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:01:49.043][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:01:49.043][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:01:49.044][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-26 16:01:49.048][private$loadEntries] Creating entries from ids [1]: "4648".
biodb.DEBUG[2025-07-26 16:01:49.049][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-26 16:01:49.050][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-26 16:01:49.054][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/4648.xml.
biodb.DEBUG[2025-07-26 16:01:49.055][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-26 16:01:49.057][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-26 16:01:49.058][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-26 16:01:49.059][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:01:49.060][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:01:49.061][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:01:49.065][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:01:49.066][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:01:49.066][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:01:49.067][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:01:49.069][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:49.070][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:49.071][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:49.072][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:49.073][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:49.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:49.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:49.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:49.077][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:01:49.078][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:01:49.079][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:49.080][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:49.081][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:01:49.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:01:49.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:49.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:49.084][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:01:49.085][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:01:49.086][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:49.087][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:49.089][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:01:49.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:01:49.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:49.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:49.092][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:01:49.093][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:01:49.094][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:49.095][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:49.096][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:01:49.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:01:49.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:49.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:49.100][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:01:49.101][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:01:49.102][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:49.103][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:49.104][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:01:49.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:01:49.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:49.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:49.108][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:01:49.109][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:01:49.110][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:49.110][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:49.112][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:01:49.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:01:49.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:49.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:49.115][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-26 16:01:49.116][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:49.117][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:49.118][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:49.119][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-26 16:01:49.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:49.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:49.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:49.123][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:49.124][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:49.125][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:49.126][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:49.131][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:49.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:49.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:49.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:49.135][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:01:49.136][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:01:49.137][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:49.138][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:49.139][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:01:49.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:01:49.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:49.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:49.143][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-26 16:01:49.144][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:01:49.145][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:49.146][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:49.147][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-26 16:01:49.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:01:49.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:49.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:49.151][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:01:49.152][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:01:49.153][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:49.153][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:49.154][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:01:49.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:01:49.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:49.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:49.158][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:49.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:49.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:49.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:49.162][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:49.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:49.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:49.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:49.166][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:49.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:49.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:49.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:49.169][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:49.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:49.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:49.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:49.173][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:49.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:49.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:49.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:49.177][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:49.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:49.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:49.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:49.181][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:49.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:49.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:49.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:49.184][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:49.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:49.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:49.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:49.188][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:49.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:49.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:49.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:49.192][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:49.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:49.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:49.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:01:49.196][self$createEntryFromContent] Accession numbers: 4648.
biodb.TRACE[2025-07-26 16:01:49.197][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:49.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:49.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:49.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:49.200][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:49.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:49.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:49.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:49.204][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:49.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:49.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:49.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:01:49.208][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:01:49.209][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:01:49.210][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:01:49.214][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:01:49.215][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:01:49.215][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:01:49.216][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:01:49.217][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:49.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:49.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:49.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:49.221][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:49.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:49.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:49.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:49.225][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:49.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:49.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:49.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:01:49.228][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:01:49.229][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:01:49.230][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:01:49.234][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:01:49.235][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:01:49.236][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:01:49.237][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-26 16:01:49.238][private$loadEntries] Creating entries from ids [1]: "62447".
biodb.DEBUG[2025-07-26 16:01:49.239][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-26 16:01:49.240][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-26 16:01:49.244][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/62447.xml.
biodb.DEBUG[2025-07-26 16:01:49.245][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-26 16:01:49.246][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-26 16:01:49.247][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-26 16:01:49.248][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:01:49.249][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:01:49.250][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:01:49.254][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:01:49.255][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:01:49.256][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:01:49.257][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:01:49.259][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:49.260][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:49.261][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:49.261][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:49.263][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:49.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:49.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:49.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:49.266][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:01:49.267][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:01:49.268][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:49.269][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:49.270][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:01:49.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:01:49.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:49.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:49.274][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:01:49.275][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:01:49.280][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:49.281][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:49.282][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:01:49.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:01:49.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:49.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:49.286][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:01:49.287][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:01:49.288][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:49.289][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:49.290][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:01:49.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:01:49.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:49.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:49.294][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:01:49.295][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:01:49.295][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:49.296][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:49.297][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:01:49.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:01:49.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:49.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:49.301][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:01:49.302][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:01:49.303][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:49.304][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:49.305][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-26 16:01:49.306][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:49.307][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:49.308][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:49.309][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-26 16:01:49.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:49.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:49.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:49.312][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:49.313][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:49.314][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:49.315][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:49.316][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:49.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:49.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:49.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:49.320][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:01:49.321][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:01:49.322][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:49.323][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:49.324][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:01:49.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:01:49.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:49.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:49.328][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-26 16:01:49.329][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:01:49.330][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:49.331][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:49.332][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-26 16:01:49.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:01:49.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:49.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:49.336][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:01:49.337][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:01:49.337][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:49.338][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:49.339][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:01:49.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:01:49.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:49.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:49.343][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:49.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:49.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:49.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:49.347][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:49.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:49.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:49.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:49.351][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:49.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:49.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:49.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:49.354][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:49.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:49.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:49.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:49.358][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:49.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:49.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:49.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:49.362][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:49.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:49.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:49.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:49.365][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:49.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:49.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:49.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:49.369][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:49.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:49.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:49.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:49.373][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:49.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:49.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:49.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:49.377][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:49.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:49.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:49.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:01:49.380][self$createEntryFromContent] Accession numbers: 62447.
biodb.TRACE[2025-07-26 16:01:49.381][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:49.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:49.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:49.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:49.385][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:49.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:49.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:49.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:49.389][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:49.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:49.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:49.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
sched.DEBUG[2025-07-26 16:01:49.407][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-07-26 16:01:49.410][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-07-26 16:01:49.413][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/80cdc67a2a6332dd4ceb98b7656194b9.content.
sched.DEBUG[2025-07-26 16:01:49.414][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-07-26 16:01:49.417][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:01:49.417][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:01:49.418][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:01:49.422][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:01:49.427][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:01:49.428][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:01:49.429][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:01:49.430][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:49.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:49.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:49.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:49.434][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:49.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:49.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:49.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:49.437][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:49.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:49.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:49.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:01:49.441][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:01:49.442][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:01:49.443][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:01:49.446][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:01:49.447][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:01:49.448][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:01:49.449][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:01:49.450][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:49.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:49.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:49.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:49.453][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:49.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:49.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:49.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:49.457][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:49.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:49.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:49.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:49.461][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:49.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:49.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:49.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:49.464][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:49.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:49.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:49.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:01:49.468][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:01:49.469][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:01:49.470][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:01:49.474][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:01:49.475][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:01:49.475][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:01:49.476][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:01:49.477][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:49.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:49.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:49.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:49.481][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:49.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:49.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:49.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:49.485][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:49.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:49.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:49.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:49.488][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:49.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:49.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:49.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:49.492][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:49.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:49.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:49.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:01:49.496][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:01:49.497][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:01:49.498][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:01:49.501][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:01:49.502][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:01:49.503][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:01:49.504][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:01:49.505][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:49.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:49.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:49.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:49.509][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:49.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:49.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:49.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:49.512][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:49.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:49.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:49.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:49.516][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:49.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:49.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:49.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:49.520][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:49.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:49.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:49.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:01:49.523][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:01:49.524][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:01:49.525][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:01:49.529][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:01:49.530][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:01:49.531][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:01:49.531][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:01:49.532][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:49.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:49.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:49.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:49.536][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:49.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:49.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:49.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:49.540][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:49.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:49.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:49.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:01:49.544][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:01:49.545][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:01:49.545][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:01:49.549][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:01:49.550][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:01:49.551][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:01:49.552][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:01:49.553][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:49.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:49.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:49.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:49.556][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:49.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:49.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:49.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:49.560][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:49.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:49.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:49.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:01:49.564][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:01:49.565][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:01:49.565][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:01:49.574][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:01:49.574][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:01:49.575][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:01:49.576][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:01:49.577][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:49.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:49.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:49.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:49.581][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:49.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:49.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:49.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:49.584][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:49.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:49.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:49.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:01:49.588][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:01:49.589][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:01:49.590][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:01:49.593][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:01:49.594][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:01:49.595][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:01:49.596][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:01:49.597][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:49.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:49.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:49.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:49.601][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:49.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:49.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:49.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:49.604][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:49.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:49.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:49.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:01:49.608][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:01:49.609][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:01:49.610][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:01:49.613][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:01:49.614][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:01:49.615][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:01:49.616][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:01:49.617][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:49.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:49.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:49.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:49.621][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:49.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:49.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:49.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:49.624][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:49.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:49.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:49.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:01:49.628][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:01:49.629][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:01:49.630][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:01:49.634][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:01:49.635][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:01:49.636][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:01:49.636][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:01:49.637][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:49.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:49.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:49.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:49.641][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:49.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:49.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:49.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:49.645][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:49.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:49.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:49.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:01:49.649][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:01:49.649][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:01:49.650][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:01:49.654][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:01:49.655][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:01:49.656][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:01:49.657][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:01:49.658][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:49.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:49.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:49.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:49.661][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:49.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:49.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:49.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:49.665][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:49.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:49.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:49.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:01:49.669][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:01:49.670][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:01:49.670][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:01:49.674][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:01:49.675][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:01:49.676][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:01:49.677][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:01:49.678][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:49.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:49.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:49.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:49.682][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:49.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:49.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:49.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:49.685][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:49.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:49.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:49.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:01:49.689][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:01:49.690][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:01:49.691][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:01:49.695][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:01:49.696][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:01:49.697][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:01:49.697][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:01:49.698][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:49.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:49.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:49.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:49.702][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:49.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:49.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:49.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:49.706][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:49.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:49.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:49.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:01:49.710][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:01:49.714][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:01:49.715][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:01:49.720][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:01:49.720][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:01:49.721][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:01:49.722][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:01:49.723][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:49.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:49.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:49.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:49.727][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:49.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:49.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:49.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:49.730][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:49.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:49.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:49.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:01:49.734][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:01:49.735][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:01:49.736][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:01:49.739][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:01:49.740][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:01:49.741][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:01:49.742][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:01:49.743][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:49.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:49.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:49.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:49.747][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:49.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:49.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:49.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:49.750][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:49.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:49.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:49.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:01:49.754][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:01:49.755][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:01:49.756][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:01:49.760][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:01:49.760][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:01:49.761][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:01:49.762][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:01:49.763][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:49.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:49.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:49.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:49.767][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:49.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:49.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:49.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:49.771][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:49.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:49.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:49.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:01:49.774][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:01:49.775][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:01:49.776][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:01:49.780][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:01:49.781][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:01:49.781][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:01:49.782][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:01:49.783][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:49.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:49.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:49.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:49.787][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:49.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:49.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:49.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:49.791][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:49.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:49.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:49.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:01:49.794][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:01:49.795][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:01:49.796][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:01:49.800][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:01:49.801][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:01:49.801][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:01:49.802][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:01:49.803][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:49.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:49.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:49.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:49.807][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:49.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:49.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:49.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:49.811][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:49.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:49.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:49.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:01:49.814][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:01:49.815][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:01:49.816][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:01:49.820][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:01:49.821][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:01:49.821][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:01:49.822][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:01:49.823][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:49.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:49.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:49.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:49.827][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:49.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:49.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:49.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:49.831][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:49.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:49.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:49.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:01:49.835][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:01:49.835][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:01:49.836][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:01:49.840][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:01:49.841][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:01:49.842][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:01:49.842][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:01:49.843][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:49.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:49.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:49.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:49.847][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:49.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:49.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:49.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:49.851][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:49.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:49.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:49.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
sched.DEBUG[2025-07-26 16:01:49.873][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-07-26 16:01:49.875][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-07-26 16:01:49.878][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/80cdc67a2a6332dd4ceb98b7656194b9.content.
sched.DEBUG[2025-07-26 16:01:49.879][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-07-26 16:01:49.882][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:01:49.883][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:01:49.883][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:01:49.887][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:01:49.888][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:01:49.889][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:01:49.890][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:01:49.891][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:49.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:49.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:49.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:49.894][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:49.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:49.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:49.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:49.898][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:49.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:49.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:49.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:01:49.902][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:01:49.903][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:01:49.903][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:01:49.907][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:01:49.908][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:01:49.909][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:01:49.910][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:01:49.911][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:49.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:49.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:49.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:49.914][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:49.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:49.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:49.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:49.918][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:49.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:49.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:49.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:49.922][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:49.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:49.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:49.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:49.925][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:49.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:49.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:49.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:01:49.929][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:01:49.930][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:01:49.931][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:01:49.935][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:01:49.935][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:01:49.936][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:01:49.937][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:01:49.938][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:49.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:49.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:49.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:49.942][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:49.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:49.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:49.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:49.946][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:49.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:49.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:49.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:49.949][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:49.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:49.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:49.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:49.953][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:49.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:49.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:49.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:01:49.957][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:01:49.957][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:01:49.958][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:01:49.962][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:01:49.963][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:01:49.964][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:01:49.965][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:01:49.966][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:49.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:49.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:49.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:49.969][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:49.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:49.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:49.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:49.973][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:49.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:49.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:49.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:49.977][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:49.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:49.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:49.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:49.981][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:49.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:49.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:49.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:01:49.984][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:01:49.985][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:01:49.986][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:01:49.990][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:01:49.990][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:01:49.991][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:01:49.992][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:01:49.993][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:49.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:49.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:49.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:49.997][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:50.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:50.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:50.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:50.005][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:50.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:50.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:50.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:01:50.009][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:01:50.010][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:01:50.011][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:01:50.014][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:01:50.015][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:01:50.016][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:01:50.017][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:01:50.018][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:50.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:50.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:50.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:50.021][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:50.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:50.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:50.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:50.025][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:50.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:50.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:50.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:01:50.029][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:01:50.029][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:01:50.030][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:01:50.034][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:01:50.035][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:01:50.036][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:01:50.037][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:01:50.038][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:50.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:50.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:50.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:50.041][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:50.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:50.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:50.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:50.045][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:50.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:50.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:50.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:01:50.049][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:01:50.050][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:01:50.050][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:01:50.054][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:01:50.055][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:01:50.056][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:01:50.057][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:01:50.058][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:50.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:50.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:50.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:50.061][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:50.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:50.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:50.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:50.065][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:50.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:50.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:50.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:01:50.069][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:01:50.070][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:01:50.071][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:01:50.074][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:01:50.075][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:01:50.076][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:01:50.077][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:01:50.078][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:50.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:50.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:50.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:50.082][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:50.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:50.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:50.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:50.085][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:50.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:50.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:50.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:01:50.089][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:01:50.090][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:01:50.091][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:01:50.094][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:01:50.095][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:01:50.096][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:01:50.097][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:01:50.098][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:50.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:50.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:50.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:50.102][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:50.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:50.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:50.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:50.105][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:50.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:50.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:50.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:01:50.109][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:01:50.110][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:01:50.111][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:01:50.114][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:01:50.115][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:01:50.116][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:01:50.117][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:01:50.118][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:50.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:50.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:50.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:50.122][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:50.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:50.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:50.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:50.125][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:50.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:50.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:50.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:01:50.129][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:01:50.130][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:01:50.131][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:01:50.134][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:01:50.135][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:01:50.136][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:01:50.137][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:01:50.138][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:50.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:50.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:50.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:50.146][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:50.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:50.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:50.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:50.150][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:50.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:50.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:50.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:01:50.154][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:01:50.154][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:01:50.155][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:01:50.159][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:01:50.160][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:01:50.161][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:01:50.161][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:01:50.163][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:50.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:50.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:50.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:50.166][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:50.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:50.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:50.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:50.170][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:50.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:50.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:50.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:01:50.173][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:01:50.174][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:01:50.175][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:01:50.179][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:01:50.180][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:01:50.181][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:01:50.182][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:01:50.183][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:50.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:50.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:50.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:50.186][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:50.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:50.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:50.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:50.190][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:50.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:50.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:50.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:01:50.194][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:01:50.195][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:01:50.195][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:01:50.199][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:01:50.200][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:01:50.201][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:01:50.202][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:01:50.203][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:50.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:50.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:50.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:50.207][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:50.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:50.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:50.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:50.210][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:50.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:50.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:50.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:01:50.214][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:01:50.215][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:01:50.216][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:01:50.220][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:01:50.220][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:01:50.221][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:01:50.222][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:01:50.223][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:50.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:50.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:50.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:50.227][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:50.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:50.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:50.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:50.231][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:50.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:50.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:50.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:01:50.234][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:01:50.235][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:01:50.236][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:01:50.240][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:01:50.241][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:01:50.242][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:01:50.242][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:01:50.243][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:50.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:50.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:50.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:50.247][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:50.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:50.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:50.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:50.251][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:50.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:50.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:50.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:01:50.255][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:01:50.255][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:01:50.256][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:01:50.260][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:01:50.261][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:01:50.262][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:01:50.263][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:01:50.264][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:50.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:50.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:50.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:50.268][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:50.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:50.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:50.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:50.272][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:50.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:50.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:50.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:01:50.275][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:01:50.276][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:01:50.277][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:01:50.281][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:01:50.282][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:01:50.282][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:01:50.283][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:01:50.288][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:50.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:50.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:50.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:50.292][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:50.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:50.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:50.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:50.296][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:50.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:50.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:50.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:01:50.300][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:01:50.301][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:01:50.301][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:01:50.305][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:01:50.306][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:01:50.307][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:01:50.308][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:01:50.309][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:50.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:50.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:50.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:50.312][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:50.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:50.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:50.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:50.316][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:50.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:50.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:50.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:50.331][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-07-26 16:01:50.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-07-26 16:01:50.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:50.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-07-26 16:01:50.340][biodb::testThat]
biodb.INFO [2025-07-26 16:01:50.341][biodb::testThat] Running test function  test_annotateMzValues_input_vector  (" annotateMzValues() accepts a single vector. ").
biodb.INFO [2025-07-26 16:01:50.342][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-07-26 16:01:50.343][biodb::testThat]
biodb.TRACE[2025-07-26 16:01:50.346][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-07-26 16:01:50.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-07-26 16:01:50.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:50.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:50.349][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-07-26 16:01:50.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-07-26 16:01:50.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:50.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:50.353][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-07-26 16:01:50.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-07-26 16:01:50.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:50.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:50.357][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:50.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:50.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:50.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:50.361][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:50.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:50.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:50.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:50.364][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:50.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:50.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:50.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:50.368][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:50.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:50.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:50.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:50.372][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:50.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:50.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:50.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:50.376][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:50.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:50.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:50.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:50.380][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:50.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:50.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:50.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:50.384][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:50.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:50.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:50.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:50.387][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:50.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:50.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:50.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:50.391][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:50.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:50.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:50.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:50.395][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:50.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:50.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:50.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:50.399][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:50.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:50.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:50.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:01:50.405][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:01:50.406][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:01:50.407][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:01:50.411][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:01:50.412][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:01:50.412][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:01:50.413][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-07-26 16:01:50.416][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-07-26 16:01:50.418][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-07-26 16:01:50.420][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/8fc54eee7e982ce554bee8000d8203f7.content.
sched.DEBUG[2025-07-26 16:01:50.421][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-07-26 16:01:50.423][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:01:50.424][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:01:50.425][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:01:50.429][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:01:50.434][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:01:50.435][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:01:50.436][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:01:50.437][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:50.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:50.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:50.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:50.441][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:50.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:50.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:50.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:50.444][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:50.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:50.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:50.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
sched.DEBUG[2025-07-26 16:01:50.449][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-07-26 16:01:50.451][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-07-26 16:01:50.453][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/6def615835d7c1dfccd5a5f135bd2f9d.content.
sched.DEBUG[2025-07-26 16:01:50.454][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-07-26 16:01:50.456][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:01:50.456][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:01:50.457][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:01:50.461][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:01:50.462][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:01:50.463][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:01:50.464][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:01:50.465][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:50.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:50.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:50.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:50.468][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:50.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:50.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:50.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:50.472][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:50.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:50.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:50.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:01:50.476][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:01:50.477][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:01:50.477][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:01:50.481][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:01:50.482][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:01:50.483][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:01:50.484][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:01:50.485][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:50.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:50.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:50.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:50.489][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:50.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:50.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:50.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:50.492][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:50.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:50.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:50.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:01:50.496][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-07-26 16:01:50.498][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:01:50.498][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:01:50.499][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:01:50.503][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:01:50.504][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:01:50.505][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:01:50.506][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:01:50.507][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:50.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:50.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:50.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:50.511][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:50.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:50.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:50.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:50.514][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:01:50.515][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-07-26 16:01:50.516][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-26 16:01:50.517][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-26 16:01:50.518][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:01:50.519][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:50.520][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:50.520][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:50.521][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:50.522][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:50.523][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:50.524][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:50.525][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:50.526][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:01:50.527][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:01:50.528][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:50.529][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:50.530][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:50.530][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:50.531][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-26 16:01:50.532][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:50.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:50.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:50.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:50.536][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:50.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:50.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:50.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:50.540][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:50.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:50.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:50.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:50.552][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [192288].
biodb.DEBUG[2025-07-26 16:01:50.553][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:01:50.554][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:01:50.555][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:01:50.559][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:01:50.560][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:01:50.561][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:01:50.561][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:01:50.562][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:50.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:50.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:50.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:50.566][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:50.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:50.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:50.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:50.570][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:01:50.571][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-07-26 16:01:50.576][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-26 16:01:50.577][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-26 16:01:50.578][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:01:50.579][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:50.580][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:50.581][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:50.582][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:50.583][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:50.584][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:50.585][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:50.586][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:50.587][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:01:50.588][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:01:50.589][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:50.590][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:50.590][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:50.591][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:50.592][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-26 16:01:50.593][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:50.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:50.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:50.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:50.597][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:50.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:50.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:50.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:50.601][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:50.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:50.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:50.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:50.605][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2025-07-26 16:01:50.606][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:01:50.606][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:01:50.607][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:01:50.611][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:01:50.612][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:01:50.613][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:01:50.614][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:01:50.615][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:50.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:50.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:50.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:50.619][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:50.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:50.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:50.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:50.622][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:01:50.623][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-07-26 16:01:50.624][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-26 16:01:50.625][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-26 16:01:50.626][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:01:50.627][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:50.628][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:50.629][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:50.630][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:50.630][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:50.631][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:50.632][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:50.633][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:50.634][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:01:50.635][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:01:50.636][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:50.637][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:50.638][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:50.639][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:50.640][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-26 16:01:50.641][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:50.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:50.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:50.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:50.644][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:50.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:50.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:50.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:50.648][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:50.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:50.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:50.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:50.652][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [209892].
biodb.DEBUG[2025-07-26 16:01:50.653][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-07-26 16:01:50.654][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-07-26 16:01:50.656][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:01:50.657][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:01:50.658][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:01:50.662][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:01:50.663][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:01:50.664][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:01:50.665][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-07-26 16:01:50.667][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-07-26 16:01:50.669][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-07-26 16:01:50.672][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/013adb879cee6d4257067df9ba0a8c7b.content.
sched.DEBUG[2025-07-26 16:01:50.673][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-07-26 16:01:50.675][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:01:50.675][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:01:50.676][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:01:50.680][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:01:50.681][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:01:50.682][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:01:50.683][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-26 16:01:50.684][private$loadEntries] Creating entries from ids [1]: "113227".
biodb.DEBUG[2025-07-26 16:01:50.685][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-26 16:01:50.686][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-26 16:01:50.689][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/113227.xml.
biodb.DEBUG[2025-07-26 16:01:50.690][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-26 16:01:50.691][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-26 16:01:50.692][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-26 16:01:50.694][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:01:50.695][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:01:50.696][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:01:50.699][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:01:50.700][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:01:50.701][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:01:50.702][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:01:50.704][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:50.705][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:50.706][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:50.707][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:50.708][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:50.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:50.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:50.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:50.712][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:01:50.713][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:01:50.714][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:50.714][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:50.716][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:01:50.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:01:50.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:50.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:50.723][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:01:50.725][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:01:50.726][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:50.727][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:50.728][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:01:50.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:01:50.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:50.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:50.732][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:01:50.733][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:01:50.734][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:50.734][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:50.736][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:01:50.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:01:50.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:50.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:50.739][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:01:50.740][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:01:50.741][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:50.742][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:50.743][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:01:50.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:01:50.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:50.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:50.747][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:01:50.748][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:01:50.749][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:50.749][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:50.750][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-26 16:01:50.751][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:50.752][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:50.753][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:50.754][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-26 16:01:50.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:50.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:50.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:50.758][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:50.759][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:50.760][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:50.761][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:50.762][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:50.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:50.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:50.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:50.766][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:01:50.767][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:01:50.768][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:50.768][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:50.770][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:01:50.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:01:50.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:50.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:50.773][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-26 16:01:50.774][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:01:50.775][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:50.776][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:50.777][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-26 16:01:50.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:01:50.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:50.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:50.781][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:01:50.782][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:01:50.783][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:50.784][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:50.785][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:01:50.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:01:50.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:50.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:50.789][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:50.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:50.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:50.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:50.792][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:50.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:50.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:50.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:50.796][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:50.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:50.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:50.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:50.800][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:50.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:50.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:50.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:50.803][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:50.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:50.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:50.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:50.807][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:50.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:50.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:50.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:50.811][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:50.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:50.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:50.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:50.815][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:50.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:50.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:50.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:50.818][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:50.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:50.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:50.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:50.822][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:50.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:50.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:50.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:01:50.826][self$createEntryFromContent] Accession numbers: 113227.
biodb.TRACE[2025-07-26 16:01:50.827][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:50.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:50.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:50.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:50.830][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:50.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:50.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:50.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:50.834][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:50.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:50.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:50.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:01:50.838][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:01:50.839][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:01:50.840][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:01:50.844][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:01:50.845][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:01:50.845][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:01:50.846][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-26 16:01:50.847][private$loadEntries] Creating entries from ids [1]: "169712".
biodb.DEBUG[2025-07-26 16:01:50.848][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-26 16:01:50.850][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-26 16:01:50.853][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/169712.xml.
biodb.DEBUG[2025-07-26 16:01:50.854][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-26 16:01:50.855][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-26 16:01:50.856][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-26 16:01:50.858][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:01:50.859][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:01:50.859][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:01:50.863][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:01:50.864][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:01:50.869][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:01:50.870][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:01:50.872][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:50.873][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:50.874][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:50.875][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:50.876][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:50.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:50.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:50.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:50.880][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:01:50.881][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:01:50.882][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:50.883][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:50.884][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:01:50.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:01:50.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:50.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:50.888][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:01:50.889][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:01:50.889][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:50.890][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:50.892][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:01:50.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:01:50.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:50.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:50.895][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:01:50.896][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:01:50.897][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:50.898][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:50.899][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:01:50.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:01:50.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:50.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:50.903][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:01:50.904][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:01:50.905][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:50.905][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:50.907][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:01:50.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:01:50.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:50.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:50.910][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:01:50.911][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:01:50.912][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:50.913][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:50.914][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-26 16:01:50.915][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:50.916][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:50.917][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:50.918][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-26 16:01:50.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:50.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:50.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:50.922][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:50.923][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:50.924][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:50.925][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:50.926][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:50.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:50.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:50.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:50.929][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:01:50.930][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:01:50.931][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:50.932][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:50.933][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:01:50.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:01:50.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:50.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:50.937][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-26 16:01:50.938][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:01:50.939][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:50.940][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:50.941][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-26 16:01:50.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:01:50.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:50.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:50.945][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:01:50.946][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:01:50.947][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:50.948][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:50.949][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:01:50.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:01:50.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:50.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:50.952][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:50.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:50.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:50.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:50.956][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:50.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:50.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:50.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:50.960][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:50.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:50.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:50.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:50.963][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:50.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:50.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:50.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:50.967][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:50.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:50.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:50.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:50.971][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:50.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:50.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:50.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:50.975][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:50.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:50.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:50.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:50.979][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:50.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:50.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:50.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:50.982][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:50.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:50.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:50.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:50.986][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:50.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:50.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:50.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:01:50.990][self$createEntryFromContent] Accession numbers: 169712.
biodb.TRACE[2025-07-26 16:01:50.991][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:50.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:50.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:50.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:50.994][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:50.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:50.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:50.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:50.998][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:50.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:51.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:51.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
sched.DEBUG[2025-07-26 16:01:51.002][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.63*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-07-26 16:01:51.005][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-07-26 16:01:51.008][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/d37a10a1f6afae785eb4d1943c254641.content.
sched.DEBUG[2025-07-26 16:01:51.009][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-07-26 16:01:51.016][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:01:51.017][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:01:51.018][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:01:51.022][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:01:51.023][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:01:51.024][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:01:51.025][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-26 16:01:51.026][private$loadEntries] Creating entries from ids [1]: "4781".
biodb.DEBUG[2025-07-26 16:01:51.026][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-26 16:01:51.028][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-26 16:01:51.033][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/4781.xml.
biodb.DEBUG[2025-07-26 16:01:51.034][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-26 16:01:51.035][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-26 16:01:51.036][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-26 16:01:51.037][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:01:51.038][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:01:51.039][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:01:51.043][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:01:51.044][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:01:51.045][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:01:51.046][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:01:51.048][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:51.049][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:51.050][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:51.050][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:51.052][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:51.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:51.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:51.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:51.055][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:01:51.056][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:01:51.057][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:51.058][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:51.059][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:01:51.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:01:51.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:51.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:51.063][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:01:51.064][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:01:51.065][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:51.066][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:51.067][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:01:51.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:01:51.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:51.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:51.071][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:01:51.072][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:01:51.073][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:51.074][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:51.075][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:01:51.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:01:51.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:51.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:51.079][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:01:51.080][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:01:51.081][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:51.081][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:51.083][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:01:51.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:01:51.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:51.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:51.086][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:01:51.087][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:01:51.088][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:51.089][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:51.090][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:01:51.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:01:51.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:51.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:51.094][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-26 16:01:51.095][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:51.096][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:51.097][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:51.098][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-26 16:01:51.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:51.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:51.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:51.102][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:51.103][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:51.103][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:51.104][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:51.105][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:51.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:51.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:51.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:51.109][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:01:51.110][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:01:51.111][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:51.112][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:51.113][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:01:51.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:01:51.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:51.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:51.117][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-26 16:01:51.118][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:01:51.119][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:51.120][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:51.121][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-26 16:01:51.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:01:51.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:51.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:51.125][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:01:51.126][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:01:51.126][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:51.127][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:51.128][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:01:51.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:01:51.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:51.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:51.132][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:51.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:51.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:51.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:51.136][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:51.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:51.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:51.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:51.140][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:51.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:51.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:51.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:51.143][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:51.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:51.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:51.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:51.147][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:51.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:51.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:51.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:51.151][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:51.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:51.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:51.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:51.154][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:51.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:51.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:51.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:51.163][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:51.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:51.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:51.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:51.167][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:51.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:51.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:51.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:51.170][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:51.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:51.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:51.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:01:51.174][self$createEntryFromContent] Accession numbers: 4781.
biodb.TRACE[2025-07-26 16:01:51.175][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:51.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:51.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:51.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:51.179][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:51.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:51.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:51.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:51.182][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:51.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:51.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:51.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:01:51.186][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:01:51.187][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:01:51.187][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:01:51.192][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:01:51.192][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:01:51.193][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:01:51.194][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-26 16:01:51.195][private$loadEntries] Creating entries from ids [1]: "16587".
biodb.DEBUG[2025-07-26 16:01:51.196][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-26 16:01:51.197][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-26 16:01:51.202][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/16587.xml.
biodb.DEBUG[2025-07-26 16:01:51.203][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-26 16:01:51.204][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-26 16:01:51.205][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-26 16:01:51.207][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:01:51.208][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:01:51.209][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:01:51.213][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:01:51.213][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:01:51.214][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:01:51.215][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:01:51.217][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:51.218][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:51.219][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:51.220][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:51.221][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:51.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:51.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:51.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:51.225][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:01:51.226][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:01:51.227][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:51.228][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:51.229][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:01:51.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:01:51.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:51.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:51.233][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:01:51.233][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:01:51.234][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:51.235][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:51.237][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:01:51.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:01:51.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:51.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:51.240][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:01:51.241][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:01:51.242][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:51.243][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:51.244][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:01:51.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:01:51.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:51.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:51.248][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:01:51.249][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:01:51.250][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:51.251][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:51.252][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:01:51.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:01:51.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:51.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:51.255][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:01:51.256][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:01:51.257][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:51.258][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:51.259][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:01:51.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:01:51.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:51.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:51.263][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-26 16:01:51.264][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:51.265][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:51.266][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:51.267][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-26 16:01:51.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:51.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:51.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:51.271][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:51.272][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:51.273][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:51.273][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:51.275][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:51.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:51.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:51.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:51.278][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:01:51.279][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:01:51.280][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:51.281][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:51.282][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:01:51.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:01:51.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:51.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:51.286][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-26 16:01:51.287][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:01:51.288][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:51.289][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:51.290][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-26 16:01:51.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:01:51.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:51.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:51.294][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:01:51.295][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:01:51.296][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:51.297][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:51.298][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:01:51.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:01:51.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:51.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:51.301][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:51.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:51.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:51.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:51.309][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:51.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:51.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:51.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:51.313][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:51.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:51.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:51.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:51.317][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:51.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:51.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:51.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:51.321][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:51.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:51.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:51.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:51.324][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:51.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:51.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:51.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:51.328][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:51.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:51.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:51.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:51.332][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:51.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:51.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:51.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:51.335][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:51.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:51.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:51.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:51.339][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:51.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:51.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:51.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:01:51.343][self$createEntryFromContent] Accession numbers: 16587.
biodb.TRACE[2025-07-26 16:01:51.344][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:51.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:51.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:51.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:51.347][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:51.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:51.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:51.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:51.351][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:51.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:51.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:51.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:01:51.355][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:01:51.356][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:01:51.356][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:01:51.361][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:01:51.361][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:01:51.362][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:01:51.363][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-26 16:01:51.364][private$loadEntries] Creating entries from ids [1]: "19804".
biodb.DEBUG[2025-07-26 16:01:51.365][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-26 16:01:51.366][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-26 16:01:51.370][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/19804.xml.
biodb.DEBUG[2025-07-26 16:01:51.371][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-26 16:01:51.372][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-26 16:01:51.373][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-26 16:01:51.374][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:01:51.375][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:01:51.376][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:01:51.380][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:01:51.381][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:01:51.382][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:01:51.383][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:01:51.385][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:51.386][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:51.386][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:51.387][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:51.388][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:51.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:51.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:51.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:51.392][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:01:51.393][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:01:51.394][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:51.395][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:51.396][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:01:51.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:01:51.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:51.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:51.400][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:01:51.401][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:01:51.402][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:51.402][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:51.404][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:01:51.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:01:51.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:51.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:51.407][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:01:51.408][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:01:51.409][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:51.410][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:51.411][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:01:51.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:01:51.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:51.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:51.415][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:01:51.416][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:01:51.417][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:51.418][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:51.419][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:01:51.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:01:51.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:51.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:51.423][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:01:51.424][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:01:51.424][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:51.425][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:51.426][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-26 16:01:51.427][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:51.428][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:51.429][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:51.430][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-26 16:01:51.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:51.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:51.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:51.434][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:51.435][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:51.436][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:51.437][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:51.438][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:51.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:51.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:51.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:51.442][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:01:51.443][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:01:51.444][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:51.444][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:51.446][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:01:51.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:01:51.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:51.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:51.454][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-26 16:01:51.455][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:01:51.456][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:51.457][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:51.458][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-26 16:01:51.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:01:51.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:51.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:51.461][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:01:51.462][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:01:51.463][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:51.464][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:51.465][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:01:51.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:01:51.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:51.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:51.469][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:51.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:51.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:51.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:51.473][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:51.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:51.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:51.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:51.476][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:51.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:51.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:51.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:51.480][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:51.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:51.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:51.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:51.483][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:51.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:51.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:51.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:51.487][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:51.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:51.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:51.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:51.491][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:51.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:51.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:51.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:51.495][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:51.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:51.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:51.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:51.498][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:51.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:51.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:51.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:51.502][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:51.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:51.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:51.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:01:51.506][self$createEntryFromContent] Accession numbers: 19804.
biodb.TRACE[2025-07-26 16:01:51.507][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:51.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:51.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:51.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:51.510][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:51.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:51.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:51.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:51.514][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:51.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:51.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:51.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:01:51.540][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-07-26 16:01:51.562][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:01:51.563][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:01:51.564][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:01:51.568][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:01:51.569][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:01:51.570][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:01:51.571][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:01:51.572][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:51.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:51.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:51.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:51.575][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:51.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:51.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:51.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:51.584][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:01:51.585][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-07-26 16:01:51.586][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-26 16:01:51.587][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-26 16:01:51.587][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:01:51.588][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:51.589][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:51.590][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:51.591][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:51.592][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:51.593][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:51.594][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:51.595][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:51.596][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:01:51.597][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:01:51.597][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:51.598][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:51.599][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:51.600][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:51.601][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-26 16:01:51.602][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:51.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:51.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:51.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:51.606][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:51.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:51.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:51.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:51.609][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:51.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:51.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:51.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:51.613][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2025-07-26 16:01:51.614][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:01:51.615][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:01:51.616][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:01:51.620][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:01:51.621][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:01:51.622][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:01:51.623][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:01:51.624][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:51.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:51.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:51.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:51.628][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:51.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:51.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:51.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:51.631][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:01:51.632][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-07-26 16:01:51.633][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-26 16:01:51.634][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-26 16:01:51.635][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:01:51.636][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:51.637][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:51.638][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:51.638][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:51.639][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:51.640][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:51.641][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:51.642][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:51.643][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:01:51.644][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:01:51.645][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:51.646][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:51.647][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:51.648][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:51.648][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-26 16:01:51.649][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:51.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:51.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:51.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:51.653][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:51.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:51.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:51.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:51.657][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:51.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:51.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:51.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:51.661][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [16587].
biodb.DEBUG[2025-07-26 16:01:51.662][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:01:51.663][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:01:51.663][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:01:51.667][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:01:51.668][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:01:51.669][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:01:51.670][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:01:51.671][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:51.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:51.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:51.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:51.675][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:51.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:51.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:51.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:51.678][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:01:51.679][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-07-26 16:01:51.680][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-26 16:01:51.681][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-26 16:01:51.682][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:01:51.683][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:51.684][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:51.685][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:51.686][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:51.686][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:51.687][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:51.688][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:51.689][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:51.690][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:01:51.691][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:01:51.692][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:51.693][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:51.694][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:51.695][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:51.696][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-26 16:01:51.697][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:51.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:51.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:51.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:51.700][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:51.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:51.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:51.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:51.704][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:51.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:51.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:51.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:51.708][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [19804].
biodb.DEBUG[2025-07-26 16:01:51.709][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-07-26 16:01:51.710][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-07-26 16:01:51.712][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:01:51.712][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:01:51.713][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:01:51.717][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:01:51.718][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:01:51.723][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:01:51.724][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-07-26 16:01:51.726][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-07-26 16:01:51.729][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-07-26 16:01:51.731][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/618204bc3e9a685033db1d9be9d78d44.content.
sched.DEBUG[2025-07-26 16:01:51.732][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-07-26 16:01:51.734][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:01:51.735][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:01:51.736][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:01:51.740][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:01:51.740][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:01:51.741][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:01:51.742][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-26 16:01:51.743][private$loadEntries] Creating entries from ids [1]: "159630".
biodb.DEBUG[2025-07-26 16:01:51.744][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-26 16:01:51.745][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-26 16:01:51.748][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/159630.xml.
biodb.DEBUG[2025-07-26 16:01:51.749][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-26 16:01:51.750][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-26 16:01:51.751][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-26 16:01:51.753][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:01:51.754][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:01:51.754][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:01:51.758][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:01:51.759][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:01:51.760][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:01:51.761][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:01:51.763][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:51.764][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:51.765][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:51.766][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:51.767][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:51.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:51.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:51.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:51.771][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:01:51.772][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:01:51.773][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:51.773][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:51.775][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:01:51.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:01:51.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:51.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:51.778][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:01:51.779][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:01:51.780][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:51.781][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:51.782][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:01:51.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:01:51.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:51.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:51.786][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:01:51.787][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:01:51.788][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:51.789][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:51.790][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:01:51.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:01:51.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:51.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:51.794][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:01:51.795][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:01:51.796][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:51.797][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:51.798][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:01:51.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:01:51.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:51.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:51.801][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:01:51.802][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:01:51.803][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:51.804][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:51.805][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-26 16:01:51.806][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:51.807][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:51.808][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:51.809][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-26 16:01:51.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:51.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:51.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:51.813][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:51.814][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:51.815][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:51.816][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:51.817][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:51.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:51.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:51.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:51.820][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:01:51.821][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:01:51.822][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:51.823][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:51.824][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:01:51.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:01:51.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:51.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:51.828][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-26 16:01:51.829][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:01:51.830][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:51.831][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:51.832][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-26 16:01:51.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:01:51.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:51.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:51.836][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:01:51.837][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:01:51.838][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:51.839][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:51.840][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:01:51.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:01:51.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:51.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:51.844][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:51.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:51.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:51.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:51.847][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:51.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:51.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:51.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:51.851][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:51.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:51.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:51.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:51.855][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:51.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:51.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:51.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:51.858][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:51.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:51.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:51.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:51.862][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:51.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:52.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:52.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:52.005][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:52.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:52.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:52.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:52.009][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:52.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:52.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:52.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:52.013][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:52.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:52.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:52.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:52.016][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:52.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:52.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:52.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:01:52.020][self$createEntryFromContent] Accession numbers: 159630.
biodb.TRACE[2025-07-26 16:01:52.021][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:52.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:52.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:52.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:52.024][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:52.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:52.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:52.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:52.028][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:52.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:52.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:52.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:01:52.031][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:01:52.032][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:01:52.033][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:01:52.037][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:01:52.038][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:01:52.039][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:01:52.040][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-26 16:01:52.041][private$loadEntries] Creating entries from ids [1]: "160202".
biodb.DEBUG[2025-07-26 16:01:52.041][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-26 16:01:52.043][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-26 16:01:52.046][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/160202.xml.
biodb.DEBUG[2025-07-26 16:01:52.047][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-26 16:01:52.048][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-26 16:01:52.049][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-26 16:01:52.050][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:01:52.051][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:01:52.052][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:01:52.056][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:01:52.057][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:01:52.057][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:01:52.058][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:01:52.060][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:52.061][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:52.062][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:52.063][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:52.064][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:52.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:52.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:52.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:52.068][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:01:52.069][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:01:52.069][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:52.070][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:52.071][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:01:52.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:01:52.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:52.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:52.075][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:01:52.076][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:01:52.077][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:52.078][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:52.079][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:01:52.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:01:52.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:52.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:52.083][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:01:52.084][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:01:52.084][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:52.085][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:52.086][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:01:52.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:01:52.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:52.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:52.090][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:01:52.091][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:01:52.092][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:52.093][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:52.094][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:01:52.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:01:52.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:52.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:52.097][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:01:52.098][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:01:52.099][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:52.100][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:52.101][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-26 16:01:52.102][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:52.103][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:52.104][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:52.105][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-26 16:01:52.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:52.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:52.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:52.109][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:52.110][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:52.110][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:52.111][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:52.112][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:52.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:52.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:52.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:52.116][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:01:52.117][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:01:52.118][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:52.119][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:52.120][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:01:52.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:01:52.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:52.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:52.124][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-26 16:01:52.125][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:01:52.126][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:52.126][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:52.128][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-26 16:01:52.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:01:52.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:52.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:52.131][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:01:52.132][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:01:52.133][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:52.134][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:52.135][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:01:52.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:01:52.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:52.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:52.139][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:52.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:52.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:52.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:52.143][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:52.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:52.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:52.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:52.146][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:52.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:52.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:52.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:52.150][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:52.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:52.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:52.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:52.154][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:52.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:52.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:52.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:52.158][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:52.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:52.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:52.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:52.162][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:52.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:52.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:52.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:52.166][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:52.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:52.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:52.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:52.171][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:52.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:52.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:52.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:52.175][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:52.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:52.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:52.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:01:52.179][self$createEntryFromContent] Accession numbers: 160202.
biodb.TRACE[2025-07-26 16:01:52.180][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:52.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:52.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:52.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:52.185][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:52.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:52.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:52.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:52.189][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:52.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:52.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:52.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:01:52.193][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:01:52.194][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:01:52.195][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:01:52.200][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:01:52.201][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:01:52.202][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:01:52.203][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-26 16:01:52.204][private$loadEntries] Creating entries from ids [1]: "160393".
biodb.DEBUG[2025-07-26 16:01:52.205][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-26 16:01:52.207][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-26 16:01:52.210][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/160393.xml.
biodb.DEBUG[2025-07-26 16:01:52.211][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-26 16:01:52.212][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-26 16:01:52.214][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-26 16:01:52.215][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:01:52.216][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:01:52.217][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:01:52.222][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:01:52.223][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:01:52.224][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:01:52.225][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:01:52.227][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:52.228][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:52.229][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:52.230][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:52.232][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:52.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:52.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:52.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:52.236][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:01:52.237][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:01:52.238][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:52.239][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:52.241][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:01:52.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:01:52.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:52.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:52.245][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:01:52.246][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:01:52.247][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:52.248][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:52.249][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:01:52.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:01:52.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:52.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:52.254][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:01:52.255][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:01:52.256][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:52.257][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:52.258][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:01:52.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:01:52.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:52.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:52.263][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:01:52.264][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:01:52.265][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:52.266][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:52.267][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:01:52.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:01:52.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:52.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:52.271][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:01:52.273][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:01:52.274][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:52.275][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:52.276][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-26 16:01:52.277][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:52.282][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:52.283][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:52.284][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-26 16:01:52.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:52.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:52.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:52.287][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:52.288][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:52.289][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:52.290][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:52.291][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:52.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:52.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:52.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:52.295][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:01:52.296][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:01:52.297][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:52.297][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:52.299][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:01:52.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:01:52.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:52.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:52.302][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-26 16:01:52.303][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:01:52.304][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:52.305][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:52.306][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-26 16:01:52.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:01:52.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:52.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:52.310][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:01:52.311][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:01:52.312][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:52.313][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:52.314][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:01:52.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:01:52.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:52.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:52.317][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:52.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:52.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:52.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:52.321][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:52.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:52.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:52.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:52.324][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:52.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:52.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:52.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:52.328][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:52.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:52.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:52.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:52.332][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:52.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:52.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:52.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:52.335][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:52.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:52.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:52.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:52.339][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:52.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:52.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:52.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:52.343][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:52.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:52.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:52.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:52.346][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:52.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:52.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:52.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:52.350][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:52.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:52.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:52.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:01:52.353][self$createEntryFromContent] Accession numbers: 160393.
biodb.TRACE[2025-07-26 16:01:52.354][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:52.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:52.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:52.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:52.358][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:52.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:52.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:52.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:52.362][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:52.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:52.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:52.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:01:52.365][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:01:52.366][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:01:52.367][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:01:52.371][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:01:52.372][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:01:52.373][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:01:52.373][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-26 16:01:52.374][private$loadEntries] Creating entries from ids [1]: "160991".
biodb.DEBUG[2025-07-26 16:01:52.375][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-26 16:01:52.377][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-26 16:01:52.380][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/160991.xml.
biodb.DEBUG[2025-07-26 16:01:52.381][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-26 16:01:52.382][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-26 16:01:52.383][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-26 16:01:52.384][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:01:52.385][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:01:52.386][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:01:52.390][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:01:52.391][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:01:52.391][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:01:52.392][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:01:52.394][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:52.395][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:52.396][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:52.397][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:52.398][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:52.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:52.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:52.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:52.402][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:01:52.403][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:01:52.404][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:52.405][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:52.406][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:01:52.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:01:52.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:52.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:52.409][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:01:52.410][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:01:52.411][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:52.412][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:52.413][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:01:52.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:01:52.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:52.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:52.417][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:01:52.418][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:01:52.419][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:52.420][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:52.421][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:01:52.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:01:52.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:52.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:52.425][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:01:52.426][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:01:52.426][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:52.427][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:52.428][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:01:52.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:01:52.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:52.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:52.432][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:01:52.433][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:01:52.434][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:52.435][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:52.436][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-26 16:01:52.437][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:52.438][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:52.439][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:52.440][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-26 16:01:52.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:52.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:52.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:52.443][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:52.444][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:52.445][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:52.446][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:52.447][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:52.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:52.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:52.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:52.451][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:01:52.452][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:01:52.453][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:52.454][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:52.455][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:01:52.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:01:52.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:52.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:52.459][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-26 16:01:52.460][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:01:52.460][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:52.461][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:52.462][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-26 16:01:52.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:01:52.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:52.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:52.466][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:01:52.467][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:01:52.468][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:52.469][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:52.470][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:01:52.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:01:52.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:52.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:52.474][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:52.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:52.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:52.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:52.477][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:52.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:52.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:52.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:52.481][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:52.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:52.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:52.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:52.484][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:52.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:52.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:52.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:52.488][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:52.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:52.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:52.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:52.492][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:52.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:52.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:52.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:52.495][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:52.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:52.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:52.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:52.499][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:52.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:52.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:52.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:52.503][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:52.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:52.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:52.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:52.506][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:52.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:52.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:52.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:01:52.510][self$createEntryFromContent] Accession numbers: 160991.
biodb.TRACE[2025-07-26 16:01:52.511][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:52.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:52.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:52.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:52.515][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:52.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:52.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:52.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:52.518][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:52.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:52.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:52.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:01:52.522][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:01:52.523][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:01:52.524][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:01:52.528][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:01:52.529][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:01:52.529][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:01:52.530][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-26 16:01:52.531][private$loadEntries] Creating entries from ids [1]: "164975".
biodb.DEBUG[2025-07-26 16:01:52.532][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-26 16:01:52.534][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-26 16:01:52.537][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/164975.xml.
biodb.DEBUG[2025-07-26 16:01:52.541][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-26 16:01:52.542][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-26 16:01:52.543][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-26 16:01:52.545][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:01:52.546][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:01:52.546][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:01:52.550][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:01:52.551][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:01:52.552][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:01:52.553][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:01:52.555][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:52.556][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:52.557][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:52.557][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:52.559][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:52.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:52.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:52.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:52.562][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:01:52.563][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:01:52.564][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:52.565][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:52.566][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:01:52.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:01:52.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:52.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:52.570][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:01:52.571][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:01:52.571][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:52.572][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:52.574][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:01:52.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:01:52.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:52.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:52.577][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:01:52.578][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:01:52.579][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:52.580][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:52.581][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:01:52.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:01:52.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:52.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:52.585][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:01:52.586][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:01:52.586][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:52.587][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:52.588][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:01:52.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:01:52.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:52.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:52.592][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:01:52.593][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:01:52.594][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:52.595][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:52.596][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-26 16:01:52.597][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:52.597][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:52.598][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:52.599][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-26 16:01:52.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:52.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:52.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:52.603][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:52.604][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:52.605][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:52.606][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:52.607][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:52.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:52.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:52.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:52.610][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:01:52.611][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:01:52.612][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:52.613][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:52.614][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:01:52.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:01:52.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:52.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:52.618][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-26 16:01:52.619][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:01:52.620][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:52.621][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:52.622][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-26 16:01:52.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:01:52.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:52.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:52.625][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:01:52.626][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:01:52.627][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:52.628][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:52.629][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:01:52.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:01:52.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:52.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:52.633][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:52.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:52.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:52.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:52.636][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:52.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:52.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:52.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:52.640][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:52.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:52.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:52.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:52.643][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:52.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:52.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:52.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:52.647][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:52.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:52.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:52.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:52.651][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:52.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:52.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:52.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:52.654][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:52.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:52.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:52.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:52.658][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:52.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:52.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:52.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:52.662][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:52.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:52.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:52.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:52.665][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:52.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:52.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:52.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:01:52.669][self$createEntryFromContent] Accession numbers: 164975.
biodb.TRACE[2025-07-26 16:01:52.670][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:52.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:52.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:52.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:52.674][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:52.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:52.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:52.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:52.677][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:52.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:52.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:52.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:01:52.681][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:01:52.682][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:01:52.682][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:01:52.687][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:01:52.687][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:01:52.688][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:01:52.689][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-26 16:01:52.690][private$loadEntries] Creating entries from ids [1]: "164994".
biodb.DEBUG[2025-07-26 16:01:52.691][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-26 16:01:52.692][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-26 16:01:52.695][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/164994.xml.
biodb.DEBUG[2025-07-26 16:01:52.696][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-26 16:01:52.698][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-26 16:01:52.699][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-26 16:01:52.700][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:01:52.701][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:01:52.702][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:01:52.706][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:01:52.707][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:01:52.707][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:01:52.708][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:01:52.710][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:52.711][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:52.712][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:52.713][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:52.714][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:52.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:52.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:52.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:52.718][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:01:52.719][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:01:52.720][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:52.721][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:52.722][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:01:52.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:01:52.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:52.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:52.726][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:01:52.726][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:01:52.727][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:52.728][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:52.730][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:01:52.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:01:52.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:52.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:52.733][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:01:52.734][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:01:52.735][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:52.736][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:52.737][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:01:52.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:01:52.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:52.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:52.741][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:01:52.742][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:01:52.743][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:52.743][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:52.744][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:01:52.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:01:52.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:52.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:52.748][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:01:52.749][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:01:52.750][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:52.751][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:52.752][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-26 16:01:52.753][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:52.754][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:52.755][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:52.756][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-26 16:01:52.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:52.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:52.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:52.759][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:52.760][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:52.761][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:52.762][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:52.763][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:52.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:52.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:52.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:52.767][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:01:52.768][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:01:52.769][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:52.770][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:52.771][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:01:52.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:01:52.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:52.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:52.775][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-26 16:01:52.776][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:01:52.776][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:52.777][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:52.778][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-26 16:01:52.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:01:52.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:52.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:52.782][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:01:52.783][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:01:52.784][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:52.785][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:52.786][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:01:52.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:01:52.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:52.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:52.790][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:52.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:52.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:52.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:52.793][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:52.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:52.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:52.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:52.800][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:52.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:52.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:52.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:52.804][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:52.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:52.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:52.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:52.808][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:52.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:52.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:52.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:52.811][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:52.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:52.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:52.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:52.815][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:52.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:52.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:52.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:52.819][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:52.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:52.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:52.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:52.822][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:52.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:52.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:52.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:52.826][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:52.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:52.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:52.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:01:52.830][self$createEntryFromContent] Accession numbers: 164994.
biodb.TRACE[2025-07-26 16:01:52.831][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:52.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:52.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:52.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:52.834][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:52.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:52.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:52.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:52.838][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:52.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:52.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:52.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:01:52.841][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:01:52.842][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:01:52.843][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:01:52.847][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:01:52.848][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:01:52.848][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:01:52.849][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-26 16:01:52.850][private$loadEntries] Creating entries from ids [1]: "169251".
biodb.DEBUG[2025-07-26 16:01:52.851][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-26 16:01:52.852][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-26 16:01:52.856][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/169251.xml.
biodb.DEBUG[2025-07-26 16:01:52.857][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-26 16:01:52.858][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-26 16:01:52.859][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-26 16:01:52.860][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:01:52.861][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:01:52.862][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:01:52.866][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:01:52.867][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:01:52.867][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:01:52.868][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:01:52.870][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:52.871][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:52.872][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:52.873][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:52.874][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:52.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:52.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:52.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:52.878][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:01:52.879][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:01:52.879][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:52.880][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:52.881][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:01:52.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:01:52.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:52.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:52.885][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:01:52.886][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:01:52.887][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:52.888][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:52.889][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:01:52.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:01:52.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:52.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:52.893][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:01:52.894][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:01:52.895][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:52.896][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:52.897][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:01:52.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:01:52.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:52.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:52.900][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:01:52.901][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:01:52.902][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:52.903][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:52.904][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:01:52.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:01:52.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:52.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:52.908][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:01:52.909][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:01:52.910][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:52.910][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:52.912][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-26 16:01:52.913][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:52.913][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:52.914][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:52.915][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-26 16:01:52.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:52.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:52.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:52.919][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:52.920][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:52.921][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:52.922][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:52.923][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:52.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:52.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:52.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:52.927][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:01:52.928][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:01:52.929][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:52.930][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:52.931][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:01:52.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:01:52.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:52.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:52.935][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-26 16:01:52.936][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:01:52.936][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:52.937][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:52.938][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-26 16:01:52.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:01:52.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:52.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:52.942][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:01:52.943][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:01:52.944][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:52.945][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:52.946][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:01:52.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:01:52.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:52.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:52.950][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:52.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:52.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:52.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:52.953][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:52.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:52.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:52.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:52.957][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:52.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:52.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:52.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:52.961][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:52.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:52.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:52.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:52.964][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:52.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:52.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:52.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:52.968][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:52.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:52.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:52.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:52.972][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:52.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:52.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:52.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:52.975][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:52.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:52.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:52.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:52.979][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:52.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:52.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:52.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:52.990][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:52.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:52.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:52.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:01:52.994][self$createEntryFromContent] Accession numbers: 169251.
biodb.TRACE[2025-07-26 16:01:52.996][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:52.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:52.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:52.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:53.000][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:53.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:53.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:53.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:53.004][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:53.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:53.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:53.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:01:53.008][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:01:53.009][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:01:53.010][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:01:53.016][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:01:53.017][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:01:53.018][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:01:53.019][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-26 16:01:53.020][private$loadEntries] Creating entries from ids [1]: "224261".
biodb.DEBUG[2025-07-26 16:01:53.021][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-26 16:01:53.023][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-26 16:01:53.027][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/224261.xml.
biodb.DEBUG[2025-07-26 16:01:53.028][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-26 16:01:53.029][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-26 16:01:53.030][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-26 16:01:53.032][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:01:53.033][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:01:53.034][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:01:53.039][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:01:53.040][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:01:53.041][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:01:53.042][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:01:53.044][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:53.045][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:53.046][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:53.047][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:53.049][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:53.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:53.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:53.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:53.053][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:01:53.054][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:01:53.055][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:53.056][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:53.057][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:01:53.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:01:53.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:53.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:53.061][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:01:53.062][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:01:53.063][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:53.064][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:53.066][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:01:53.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:01:53.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:53.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:53.070][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:01:53.071][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:01:53.072][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:53.073][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:53.074][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:01:53.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:01:53.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:53.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:53.090][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:01:53.091][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:01:53.092][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:53.093][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:53.094][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:01:53.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:01:53.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:53.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:53.098][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:01:53.100][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:01:53.100][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:53.101][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:53.103][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-26 16:01:53.104][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:53.105][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:53.106][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:53.107][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-26 16:01:53.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:53.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:53.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:53.111][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:53.112][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:53.113][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:53.114][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:53.115][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:53.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:53.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:53.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:53.119][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:01:53.120][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:01:53.121][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:53.122][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:53.123][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:01:53.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:01:53.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:53.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:53.127][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-26 16:01:53.128][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:01:53.129][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:53.130][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:53.131][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-26 16:01:53.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:01:53.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:53.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:53.135][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:01:53.136][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:01:53.137][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:53.138][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:53.139][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:01:53.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:01:53.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:53.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:53.144][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:53.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:53.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:53.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:53.147][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:53.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:53.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:53.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:53.151][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:53.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:53.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:53.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:53.155][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:53.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:53.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:53.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:53.159][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:53.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:53.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:53.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:53.163][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:53.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:53.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:53.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:53.167][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:53.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:53.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:53.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:53.171][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:53.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:53.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:53.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:53.175][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:53.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:53.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:53.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:53.179][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:53.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:53.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:53.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:01:53.183][self$createEntryFromContent] Accession numbers: 224261.
biodb.TRACE[2025-07-26 16:01:53.184][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:53.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:53.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:53.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:53.188][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:53.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:53.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:53.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:53.192][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:53.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:53.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:53.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
sched.DEBUG[2025-07-26 16:01:53.197][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-07-26 16:01:53.199][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-07-26 16:01:53.201][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/e0540b0a9d3ba75ce1522ce23f76319e.content.
sched.DEBUG[2025-07-26 16:01:53.202][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-07-26 16:01:53.204][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:01:53.205][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:01:53.206][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:01:53.211][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:01:53.212][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:01:53.213][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:01:53.213][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:01:53.215][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:53.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:53.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:53.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:53.219][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:53.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:53.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:53.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:53.223][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:53.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:53.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:53.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:01:53.227][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:01:53.228][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:01:53.228][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:01:53.233][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:01:53.234][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:01:53.234][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:01:53.235][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-26 16:01:53.236][private$loadEntries] Creating entries from ids [1]: "71954".
biodb.DEBUG[2025-07-26 16:01:53.237][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-26 16:01:53.239][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-26 16:01:53.244][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/71954.xml.
biodb.DEBUG[2025-07-26 16:01:53.245][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-26 16:01:53.246][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-26 16:01:53.247][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-26 16:01:53.249][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:01:53.250][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:01:53.251][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:01:53.255][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:01:53.256][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:01:53.257][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:01:53.258][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:01:53.260][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:53.261][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:53.262][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:53.263][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:53.264][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:53.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:53.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:53.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:53.268][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:01:53.269][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:01:53.270][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:53.271][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:53.273][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:01:53.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:01:53.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:53.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:53.277][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:01:53.278][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:01:53.279][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:53.280][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:53.281][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:01:53.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:01:53.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:53.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:53.285][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:01:53.286][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:01:53.287][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:53.288][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:53.289][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:01:53.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:01:53.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:53.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:53.293][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:01:53.294][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:01:53.295][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:53.295][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:53.296][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:01:53.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:01:53.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:53.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:53.300][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:01:53.301][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:01:53.302][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:53.303][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:53.304][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-26 16:01:53.305][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:53.306][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:53.307][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:53.308][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-26 16:01:53.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:53.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:53.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:53.312][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:53.313][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:53.313][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:53.314][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:53.315][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:53.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:53.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:53.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:53.319][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:01:53.320][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:01:53.321][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:53.322][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:53.323][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:01:53.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:01:53.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:53.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:53.327][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-26 16:01:53.328][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:01:53.328][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:53.329][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:53.330][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-26 16:01:53.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:01:53.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:53.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:53.334][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:01:53.335][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:01:53.336][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:53.337][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:53.338][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:01:53.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:01:53.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:53.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:53.342][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:53.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:53.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:53.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:53.345][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:53.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:53.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:53.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:53.349][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:53.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:53.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:53.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:53.353][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:53.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:53.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:53.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:53.356][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:53.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:53.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:53.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:53.360][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:53.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:53.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:53.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:53.367][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:53.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:53.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:53.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:53.371][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:53.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:53.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:53.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:53.374][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:53.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:53.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:53.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:53.378][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:53.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:53.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:53.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:01:53.382][self$createEntryFromContent] Accession numbers: 71954.
biodb.TRACE[2025-07-26 16:01:53.383][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:53.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:53.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:53.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:53.386][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:53.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:53.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:53.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:53.390][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:53.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:53.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:53.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:01:53.393][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:01:53.394][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:01:53.395][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:01:53.399][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:01:53.400][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:01:53.401][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:01:53.401][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-26 16:01:53.402][private$loadEntries] Creating entries from ids [1]: "197612".
biodb.DEBUG[2025-07-26 16:01:53.403][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-26 16:01:53.405][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-26 16:01:53.408][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/197612.xml.
biodb.DEBUG[2025-07-26 16:01:53.409][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-26 16:01:53.410][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-26 16:01:53.411][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-26 16:01:53.412][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:01:53.413][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:01:53.414][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:01:53.418][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:01:53.419][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:01:53.420][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:01:53.420][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:01:53.423][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:53.424][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:53.424][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:53.425][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:53.426][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:53.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:53.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:53.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:53.430][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:01:53.431][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:01:53.432][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:53.433][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:53.434][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:01:53.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:01:53.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:53.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:53.437][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:01:53.438][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:01:53.439][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:53.440][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:53.441][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:01:53.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:01:53.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:53.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:53.445][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:01:53.446][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:01:53.447][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:53.448][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:53.449][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:01:53.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:01:53.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:53.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:53.452][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:01:53.453][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:01:53.454][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:53.455][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:53.456][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:01:53.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:01:53.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:53.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:53.460][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:01:53.461][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:01:53.462][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:53.462][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:53.463][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-26 16:01:53.464][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:53.465][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:53.466][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:53.467][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-26 16:01:53.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:53.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:53.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:53.471][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:53.472][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:53.473][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:53.474][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:53.475][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:53.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:53.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:53.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:53.478][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:01:53.479][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:01:53.480][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:53.481][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:53.482][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:01:53.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:01:53.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:53.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:53.486][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-26 16:01:53.487][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:01:53.488][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:53.489][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:53.490][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-26 16:01:53.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:01:53.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:53.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:53.493][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:01:53.494][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:01:53.495][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:53.496][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:53.497][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:01:53.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:01:53.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:53.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:53.501][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:53.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:53.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:53.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:53.505][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:53.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:53.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:53.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:53.508][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:53.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:53.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:53.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:53.512][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:53.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:53.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:53.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:53.516][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:53.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:53.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:53.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:53.519][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:53.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:53.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:53.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:53.523][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:53.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:53.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:53.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:53.527][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:53.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:53.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:53.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:53.530][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:53.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:53.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:53.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:53.534][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:53.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:53.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:53.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:01:53.538][self$createEntryFromContent] Accession numbers: 197612.
biodb.TRACE[2025-07-26 16:01:53.539][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:53.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:53.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:53.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:53.542][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:53.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:53.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:53.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:53.546][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:53.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:53.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:53.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:01:53.550][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-07-26 16:01:53.551][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:01:53.552][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:01:53.553][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:01:53.557][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:01:53.558][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:01:53.559][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:01:53.560][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:01:53.561][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:53.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:53.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:53.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:53.564][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:53.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:53.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:53.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:53.568][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:01:53.569][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-07-26 16:01:53.570][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-26 16:01:53.571][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-26 16:01:53.572][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:01:53.573][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:53.573][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:53.574][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:53.575][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:53.576][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:53.577][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:53.578][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:53.579][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:53.580][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:01:53.581][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:01:53.582][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:53.583][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:53.583][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:53.584][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:53.585][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-26 16:01:53.586][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:53.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:53.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:53.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:53.590][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:53.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:53.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:53.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:53.594][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:53.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:53.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:53.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:53.598][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [7799].
biodb.DEBUG[2025-07-26 16:01:53.599][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:01:53.599][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:01:53.600][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:01:53.604][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:01:53.605][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:01:53.606][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:01:53.607][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:01:53.608][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:53.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:53.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:53.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:53.612][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:53.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:53.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:53.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:53.615][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:01:53.616][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-07-26 16:01:53.617][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-26 16:01:53.618][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-26 16:01:53.619][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:01:53.623][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:53.624][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:53.625][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:53.626][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:53.627][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:53.628][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:53.628][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:53.629][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:53.630][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:01:53.631][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:01:53.632][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:53.633][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:53.634][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:53.635][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:53.636][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-26 16:01:53.636][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:53.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:53.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:53.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:53.640][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:53.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:53.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:53.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:53.644][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:53.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:53.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:53.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:53.647][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [71954].
biodb.DEBUG[2025-07-26 16:01:53.648][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:01:53.649][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:01:53.650][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:01:53.654][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:01:53.655][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:01:53.656][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:01:53.656][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:01:53.657][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:53.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:53.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:53.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:53.661][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:53.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:53.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:53.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:53.665][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:01:53.665][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-07-26 16:01:53.666][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-26 16:01:53.667][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-26 16:01:53.668][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:01:53.669][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:53.670][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:53.671][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:53.672][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:53.672][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:53.673][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:53.674][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:53.675][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:53.676][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:01:53.677][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:01:53.678][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:53.679][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:53.679][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:53.680][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:53.681][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-26 16:01:53.682][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:53.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:53.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:53.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:53.686][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:53.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:53.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:53.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:53.689][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:53.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:53.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:53.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:53.693][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [197612].
biodb.DEBUG[2025-07-26 16:01:53.694][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-07-26 16:01:53.695][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2025-07-26 16:01:53.702][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:53.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:53.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:53.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:53.706][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:53.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:53.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:53.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:53.709][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:53.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:53.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:53.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:53.713][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:53.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:53.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:53.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:53.717][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:53.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:53.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:53.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:53.720][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:53.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:53.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:53.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:53.724][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:53.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:53.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:53.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:53.727][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:53.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:53.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:53.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:53.731][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:53.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:53.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:53.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:53.735][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:53.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:53.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:53.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:53.738][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:53.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:53.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:53.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:53.742][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:53.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:53.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:53.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:01:53.795][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:01:53.796][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:01:53.797][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:01:53.801][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:01:53.802][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:01:53.803][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:01:53.804][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-07-26 16:01:53.806][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-07-26 16:01:53.809][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-07-26 16:01:53.810][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/2e865a03592d6effdf242ff63104f35a.content.
sched.DEBUG[2025-07-26 16:01:53.811][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
sched.DEBUG[2025-07-26 16:01:53.814][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-07-26 16:01:53.816][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-07-26 16:01:53.819][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/f0c73645ca32490f91d503a462d812b2.content.
sched.DEBUG[2025-07-26 16:01:53.820][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-07-26 16:01:53.822][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:01:53.822][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:01:53.823][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:01:53.827][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:01:53.828][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:01:53.829][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:01:53.830][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:01:53.831][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:53.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:53.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:53.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:53.834][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:53.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:53.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:53.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:53.838][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:53.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:53.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:53.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:01:53.842][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:01:53.843][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:01:53.843][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:01:53.847][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:01:53.848][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:01:53.849][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:01:53.850][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:01:53.851][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:53.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:53.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:53.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:53.855][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:53.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:53.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:53.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:53.858][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:53.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:53.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:53.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:01:53.862][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:01:53.866][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:01:53.867][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:01:53.871][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:01:53.872][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:01:53.873][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:01:53.873][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:01:53.874][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:53.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:53.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:53.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:53.878][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:53.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:53.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:53.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:53.882][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:53.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:53.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:53.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:01:53.885][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-07-26 16:01:53.887][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:01:53.887][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:01:53.888][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:01:53.892][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:01:53.893][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:01:53.894][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:01:53.894][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:01:53.896][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:53.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:53.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:53.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:53.899][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:53.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:53.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:53.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:53.903][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:01:53.904][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-07-26 16:01:53.904][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-26 16:01:53.905][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-26 16:01:53.906][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:01:53.907][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:53.908][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:53.909][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:53.910][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:53.910][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:53.911][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:53.912][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:53.913][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:53.914][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:01:53.915][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:01:53.916][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:53.917][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:53.918][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:53.918][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:53.919][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-26 16:01:53.920][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:53.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:53.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:53.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:53.924][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:53.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:53.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:53.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:53.927][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:53.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:53.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:53.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:53.931][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4648].
biodb.DEBUG[2025-07-26 16:01:53.932][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:01:53.933][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:01:53.934][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:01:53.938][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:01:53.938][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:01:53.939][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:01:53.940][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:01:53.952][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:53.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:53.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:53.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:53.955][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:53.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:53.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:53.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:53.978][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:01:53.979][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-07-26 16:01:53.980][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-26 16:01:53.980][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-26 16:01:53.981][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:01:53.982][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:53.983][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:53.984][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:53.985][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:53.986][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:53.987][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:53.988][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:53.989][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:53.989][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:01:53.999][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:01:54.000][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:54.001][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:54.002][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:54.002][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:54.003][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-26 16:01:54.004][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:54.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:54.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:54.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:54.008][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:54.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:54.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:54.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:54.012][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:54.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:54.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:54.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:54.016][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2025-07-26 16:01:54.017][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:01:54.017][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:01:54.018][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:01:54.022][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:01:54.023][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:01:54.024][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:01:54.025][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:01:54.026][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:54.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:54.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:54.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:54.029][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:54.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:54.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:54.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:54.033][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:01:54.034][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-07-26 16:01:54.035][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-26 16:01:54.036][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-26 16:01:54.037][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:01:54.037][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:54.038][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:54.039][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:54.040][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:54.041][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:54.042][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:54.043][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:54.044][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:54.045][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:01:54.046][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:01:54.046][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:54.047][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:54.048][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:54.052][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:54.053][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-26 16:01:54.054][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:54.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:54.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:54.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:54.057][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:54.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:54.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:54.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:54.061][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:54.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:54.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:54.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:54.065][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [62447].
biodb.DEBUG[2025-07-26 16:01:54.066][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-07-26 16:01:54.067][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-07-26 16:01:54.069][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:01:54.069][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:01:54.070][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:01:54.074][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:01:54.075][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:01:54.076][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:01:54.077][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-07-26 16:01:54.079][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.29*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-07-26 16:01:54.081][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-07-26 16:01:54.084][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/aad5aa7c63b98774a5df46d96a4e7cac.content.
sched.DEBUG[2025-07-26 16:01:54.085][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-07-26 16:01:54.087][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:01:54.088][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:01:54.089][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:01:54.093][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:01:54.094][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:01:54.095][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:01:54.096][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:01:54.097][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:54.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:54.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:54.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:54.100][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:54.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:54.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:54.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:54.104][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:54.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:54.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:54.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:01:54.111][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:01:54.112][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:01:54.113][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:01:54.117][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:01:54.118][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:01:54.119][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:01:54.119][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-26 16:01:54.120][private$loadEntries] Creating entries from ids [1]: "91601".
biodb.DEBUG[2025-07-26 16:01:54.121][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-26 16:01:54.123][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-26 16:01:54.126][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/91601.xml.
biodb.DEBUG[2025-07-26 16:01:54.127][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-26 16:01:54.128][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-26 16:01:54.129][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-26 16:01:54.130][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:01:54.131][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:01:54.132][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:01:54.136][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:01:54.137][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:01:54.138][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:01:54.138][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:01:54.140][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:54.141][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:54.142][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:54.143][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:54.144][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:54.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:54.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:54.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:54.148][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:01:54.149][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:01:54.150][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:54.151][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:54.152][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:01:54.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:01:54.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:54.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:54.155][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:01:54.156][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:01:54.157][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:54.158][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:54.159][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:01:54.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:01:54.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:54.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:54.163][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:01:54.164][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:01:54.165][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:54.166][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:54.167][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:01:54.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:01:54.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:54.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:54.171][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:01:54.172][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:01:54.172][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:54.173][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:54.174][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:01:54.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:01:54.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:54.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:54.178][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:01:54.179][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:01:54.180][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:54.181][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:54.182][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-26 16:01:54.183][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:54.184][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:54.184][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:54.185][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-26 16:01:54.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:54.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:54.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:54.189][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:54.190][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:54.191][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:54.192][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:54.193][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:54.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:54.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:54.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:54.197][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:01:54.197][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:01:54.198][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:54.199][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:54.200][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:01:54.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:01:54.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:54.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:54.204][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-26 16:01:54.205][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:01:54.206][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:54.207][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:54.208][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-26 16:01:54.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:01:54.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:54.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:54.212][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:01:54.212][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:01:54.213][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:54.214][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:54.215][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:01:54.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:01:54.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:54.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:54.219][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:54.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:54.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:54.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:54.223][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:54.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:54.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:54.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:54.226][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:54.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:54.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:54.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:54.230][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:54.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:54.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:54.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:54.234][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:54.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:54.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:54.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:54.237][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:54.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:54.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:54.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:54.241][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:54.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:54.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:54.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:54.245][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:54.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:54.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:54.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:54.248][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:54.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:54.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:54.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:54.252][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:54.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:54.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:54.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:01:54.255][self$createEntryFromContent] Accession numbers: 91601.
biodb.TRACE[2025-07-26 16:01:54.256][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:54.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:54.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:54.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:54.260][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:54.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:54.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:54.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:54.264][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:54.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:54.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:54.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:01:54.267][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:01:54.268][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:01:54.269][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:01:54.273][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:01:54.274][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:01:54.275][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:01:54.276][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-26 16:01:54.277][private$loadEntries] Creating entries from ids [1]: "95147".
biodb.DEBUG[2025-07-26 16:01:54.278][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-26 16:01:54.279][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-26 16:01:54.282][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/95147.xml.
biodb.DEBUG[2025-07-26 16:01:54.283][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-26 16:01:54.284][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-26 16:01:54.285][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-26 16:01:54.287][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:01:54.288][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:01:54.289][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:01:54.293][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:01:54.293][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:01:54.294][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:01:54.295][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:01:54.297][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:54.298][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:54.299][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:54.300][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:54.301][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:54.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:54.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:54.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:54.305][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:01:54.306][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:01:54.307][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:54.308][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:54.309][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:01:54.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:01:54.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:54.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:54.313][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:01:54.314][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:01:54.314][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:54.315][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:54.317][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:01:54.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:01:54.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:54.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:54.320][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:01:54.321][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:01:54.322][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:54.323][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:54.324][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:01:54.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:01:54.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:54.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:54.328][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:01:54.329][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:01:54.330][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:54.331][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:54.332][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:01:54.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:01:54.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:54.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:54.336][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:01:54.337][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:01:54.337][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:54.338][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:54.340][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-26 16:01:54.340][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:54.341][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:54.342][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:54.343][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-26 16:01:54.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:54.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:54.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:54.347][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:54.348][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:54.349][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:54.350][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:54.351][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:54.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:54.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:54.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:54.355][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:01:54.356][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:01:54.357][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:54.357][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:54.359][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:01:54.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:01:54.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:54.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:54.362][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-26 16:01:54.363][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:01:54.364][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:54.365][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:54.366][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-26 16:01:54.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:01:54.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:54.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:54.374][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:01:54.375][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:01:54.376][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:54.376][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:54.377][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:01:54.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:01:54.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:54.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:54.381][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:54.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:54.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:54.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:54.385][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:54.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:54.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:54.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:54.388][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:54.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:54.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:54.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:54.392][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:54.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:54.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:54.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:54.395][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:54.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:54.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:54.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:54.399][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:54.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:54.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:54.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:54.403][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:54.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:54.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:54.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:54.406][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:54.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:54.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:54.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:54.410][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:54.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:54.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:54.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:54.413][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:54.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:54.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:54.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:01:54.417][self$createEntryFromContent] Accession numbers: 95147.
biodb.TRACE[2025-07-26 16:01:54.418][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:54.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:54.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:54.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:54.422][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:54.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:54.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:54.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:54.425][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:54.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:54.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:54.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:01:54.429][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-07-26 16:01:54.430][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:01:54.431][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:01:54.432][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:01:54.436][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:01:54.437][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:01:54.438][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:01:54.438][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:01:54.440][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:54.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:54.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:54.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:54.443][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:54.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:54.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:54.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:54.447][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:01:54.448][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-07-26 16:01:54.448][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-26 16:01:54.449][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-26 16:01:54.450][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:01:54.451][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:54.452][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:54.453][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:54.454][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:54.455][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:54.455][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:54.456][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:54.457][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:54.458][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:01:54.459][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:01:54.460][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:54.461][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:54.462][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:54.463][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:54.463][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-26 16:01:54.464][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:54.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:54.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:54.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:54.468][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:54.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:54.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:54.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:54.472][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:54.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:54.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:54.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:54.475][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2025-07-26 16:01:54.476][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:01:54.477][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:01:54.478][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:01:54.482][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:01:54.483][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:01:54.484][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:01:54.484][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:01:54.486][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:54.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:54.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:54.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:54.489][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:54.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:54.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:54.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:54.493][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:01:54.494][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-07-26 16:01:54.495][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-26 16:01:54.495][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-26 16:01:54.496][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:01:54.497][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:54.498][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:54.499][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:54.500][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:54.501][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:54.502][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:54.503][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:54.504][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:54.504][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:01:54.505][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:01:54.506][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:54.507][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:54.508][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:54.509][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:54.510][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-26 16:01:54.511][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:54.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:54.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:54.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:54.514][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:54.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:54.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:54.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:54.518][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:54.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:54.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:54.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:54.522][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [91601].
biodb.DEBUG[2025-07-26 16:01:54.523][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:01:54.524][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:01:54.525][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:01:54.528][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:01:54.529][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:01:54.530][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:01:54.531][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:01:54.532][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:54.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:54.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:54.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:54.536][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:54.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:54.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:54.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:54.539][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:01:54.540][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-07-26 16:01:54.541][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-26 16:01:54.542][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-26 16:01:54.543][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:01:54.544][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:54.545][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:54.546][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:54.546][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:54.547][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:54.548][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:54.549][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:54.550][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:54.551][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:01:54.552][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:01:54.553][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:54.554][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:54.555][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:54.555][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:54.556][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-26 16:01:54.557][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:54.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:54.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:54.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:54.561][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:54.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:54.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:54.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:54.565][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:54.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:54.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:54.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:54.569][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [95147].
biodb.DEBUG[2025-07-26 16:01:54.569][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-07-26 16:01:54.570][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-07-26 16:01:54.572][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:01:54.573][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:01:54.574][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:01:54.578][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:01:54.579][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:01:54.579][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:01:54.580][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-07-26 16:01:54.583][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.17*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-07-26 16:01:54.585][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-07-26 16:01:54.589][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/039d0a183be9e894c19f49abb7cadca8.content.
sched.DEBUG[2025-07-26 16:01:54.590][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-07-26 16:01:54.592][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:01:54.593][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:01:54.594][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:01:54.598][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:01:54.599][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:01:54.599][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:01:54.600][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-26 16:01:54.601][private$loadEntries] Creating entries from ids [1]: "636".
biodb.DEBUG[2025-07-26 16:01:54.602][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-26 16:01:54.603][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-26 16:01:54.608][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/636.xml.
biodb.DEBUG[2025-07-26 16:01:54.609][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-26 16:01:54.610][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-26 16:01:54.611][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-26 16:01:54.612][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:01:54.613][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:01:54.614][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:01:54.618][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:01:54.618][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:01:54.619][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:01:54.620][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:01:54.622][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:54.623][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:54.624][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:54.625][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:54.626][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:54.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:54.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:54.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:54.633][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:01:54.634][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:01:54.635][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:54.636][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:54.637][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:01:54.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:01:54.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:54.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:54.641][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:01:54.642][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:01:54.643][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:54.644][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:54.645][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:01:54.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:01:54.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:54.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:54.648][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:01:54.649][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:01:54.650][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:54.651][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:54.652][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:01:54.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:01:54.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:54.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:54.656][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:01:54.657][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:01:54.657][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:54.658][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:54.659][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:01:54.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:01:54.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:54.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:54.663][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:01:54.664][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:01:54.665][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:54.666][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:54.667][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:01:54.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:01:54.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:54.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:54.670][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-26 16:01:54.671][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:54.672][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:54.673][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:54.674][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-26 16:01:54.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:54.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:54.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:54.678][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:54.679][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:54.680][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:54.680][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:54.682][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:54.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:54.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:54.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:54.685][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:01:54.686][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:01:54.687][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:54.688][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:54.689][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:01:54.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:01:54.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:54.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:54.693][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-26 16:01:54.694][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:01:54.695][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:54.695][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:54.696][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-26 16:01:54.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:01:54.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:54.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:54.700][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:01:54.701][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:01:54.702][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:54.703][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:54.704][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:01:54.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:01:54.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:54.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:54.707][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:54.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:54.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:54.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:54.711][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:54.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:54.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:54.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:54.715][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:54.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:54.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:54.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:54.718][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:54.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:54.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:54.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:54.722][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:54.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:54.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:54.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:54.725][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:54.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:54.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:54.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:54.729][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:54.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:54.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:54.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:54.733][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:54.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:54.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:54.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:54.736][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:54.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:54.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:54.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:54.740][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:54.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:54.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:54.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:01:54.744][self$createEntryFromContent] Accession numbers: 636.
biodb.TRACE[2025-07-26 16:01:54.745][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:54.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:54.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:54.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:54.748][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:54.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:54.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:54.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:54.752][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:54.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:54.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:54.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:01:54.756][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:01:54.757][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:01:54.757][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:01:54.762][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:01:54.762][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:01:54.763][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:01:54.764][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-26 16:01:54.765][private$loadEntries] Creating entries from ids [1]: "64199".
biodb.DEBUG[2025-07-26 16:01:54.766][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-26 16:01:54.767][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-26 16:01:54.772][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/64199.xml.
biodb.DEBUG[2025-07-26 16:01:54.773][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-26 16:01:54.774][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-26 16:01:54.775][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-26 16:01:54.776][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:01:54.777][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:01:54.778][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:01:54.782][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:01:54.783][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:01:54.784][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:01:54.784][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:01:54.786][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:54.787][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:54.788][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:54.789][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:54.790][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:54.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:54.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:54.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:54.794][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:01:54.795][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:01:54.796][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:54.797][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:54.798][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:01:54.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:01:54.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:54.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:54.802][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:01:54.803][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:01:54.804][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:54.804][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:54.806][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:01:54.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:01:54.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:54.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:54.809][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:01:54.810][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:01:54.811][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:54.812][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:54.813][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:01:54.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:01:54.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:54.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:54.817][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:01:54.818][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:01:54.819][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:54.820][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:54.821][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:01:54.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:01:54.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:54.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:54.825][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:01:54.826][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:01:54.826][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:54.827][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:54.828][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-26 16:01:54.829][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:54.830][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:54.831][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:54.832][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-26 16:01:54.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:54.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:54.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:54.836][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:54.837][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:54.838][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:54.839][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:54.840][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:54.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:54.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:54.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:54.843][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:01:54.844][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:01:54.845][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:54.846][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:54.847][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:01:54.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:01:54.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:54.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:54.851][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-26 16:01:54.852][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:01:54.853][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:54.854][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:54.855][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-26 16:01:54.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:01:54.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:54.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:54.859][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:01:54.860][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:01:54.860][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:54.861][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:54.862][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:01:54.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:01:54.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:54.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:54.866][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:54.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:54.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:54.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:54.870][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:54.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:54.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:54.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:54.873][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:54.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:54.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:54.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:54.877][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:54.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:54.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:54.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:54.881][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:54.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:54.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:54.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:54.888][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:54.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:54.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:54.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:54.892][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:54.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:54.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:54.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:54.895][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:54.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:54.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:54.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:54.899][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:54.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:54.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:54.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:54.903][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:54.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:54.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:54.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:01:54.906][self$createEntryFromContent] Accession numbers: 64199.
biodb.TRACE[2025-07-26 16:01:54.907][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:54.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:54.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:54.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:54.911][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:54.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:54.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:54.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:54.914][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:54.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:54.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:54.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:01:54.918][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:01:54.919][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:01:54.919][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:01:54.923][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:01:54.924][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:01:54.925][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:01:54.926][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-26 16:01:54.927][private$loadEntries] Creating entries from ids [1]: "65648".
biodb.DEBUG[2025-07-26 16:01:54.928][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-26 16:01:54.929][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-26 16:01:54.933][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/65648.xml.
biodb.DEBUG[2025-07-26 16:01:54.934][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-26 16:01:54.935][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-26 16:01:54.936][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-26 16:01:54.938][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:01:54.939][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:01:54.939][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:01:54.943][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:01:54.944][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:01:54.945][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:01:54.946][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:01:54.948][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:54.949][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:54.949][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:54.950][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:54.951][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:54.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:54.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:54.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:54.955][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:01:54.956][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:01:54.957][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:54.958][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:54.959][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:01:54.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:01:54.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:54.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:54.963][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:01:54.963][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:01:54.964][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:54.965][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:54.966][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:01:54.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:01:54.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:54.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:54.970][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:01:54.971][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:01:54.972][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:54.973][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:54.974][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:01:54.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:01:54.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:54.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:54.977][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:01:54.978][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:01:54.979][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:54.980][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:54.981][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:01:54.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:01:54.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:54.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:54.985][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:01:54.986][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:01:54.987][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:54.987][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:54.988][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-26 16:01:54.989][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:54.990][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:54.991][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:54.992][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-26 16:01:54.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:54.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:54.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:54.996][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:54.997][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:54.998][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:54.999][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:55.000][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:55.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:55.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:55.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:55.003][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:01:55.004][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:01:55.005][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:55.006][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:55.007][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:01:55.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:01:55.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:55.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:55.011][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-26 16:01:55.012][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:01:55.013][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:55.014][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:55.015][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-26 16:01:55.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:01:55.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:55.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:55.019][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:01:55.019][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:01:55.020][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:55.021][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:55.022][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:01:55.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:01:55.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:55.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:55.026][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:55.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:55.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:55.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:55.030][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:55.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:55.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:55.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:55.033][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:55.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:55.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:55.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:55.037][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:55.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:55.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:55.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:55.041][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:55.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:55.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:55.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:55.044][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:55.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:55.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:55.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:55.048][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:55.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:55.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:55.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:55.052][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:55.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:55.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:55.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:55.055][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:55.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:55.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:55.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:55.059][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:55.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:55.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:55.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:01:55.062][self$createEntryFromContent] Accession numbers: 65648.
biodb.TRACE[2025-07-26 16:01:55.063][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:55.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:55.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:55.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:55.067][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:55.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:55.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:55.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:55.071][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:55.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:55.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:55.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:01:55.074][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-07-26 16:01:55.076][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:01:55.077][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:01:55.078][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:01:55.082][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:01:55.083][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:01:55.083][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:01:55.084][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:01:55.085][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:55.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:55.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:55.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:55.089][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:55.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:55.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:55.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:55.093][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:01:55.093][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-07-26 16:01:55.094][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-26 16:01:55.095][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-26 16:01:55.096][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:01:55.097][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:55.098][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:55.099][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:55.100][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:55.101][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:55.101][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:55.102][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:55.103][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:55.104][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:01:55.105][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:01:55.106][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:55.107][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:55.108][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:55.109][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:55.109][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-26 16:01:55.110][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:55.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:55.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:55.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:55.114][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:55.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:55.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:55.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:55.118][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:55.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:55.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:55.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:55.122][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [636].
biodb.DEBUG[2025-07-26 16:01:55.123][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:01:55.123][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:01:55.124][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:01:55.128][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:01:55.129][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:01:55.130][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:01:55.131][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:01:55.132][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:55.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:55.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:55.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:55.136][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:55.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:55.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:55.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:55.143][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:01:55.144][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-07-26 16:01:55.145][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-26 16:01:55.145][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-26 16:01:55.146][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:01:55.147][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:55.148][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:55.149][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:55.150][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:55.151][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:55.152][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:55.153][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:55.153][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:55.154][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:01:55.155][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:01:55.156][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:55.157][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:55.158][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:55.159][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:55.160][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-26 16:01:55.160][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:55.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:55.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:55.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:55.164][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:55.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:55.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:55.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:55.168][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:55.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:55.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:55.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:55.171][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [64199].
biodb.DEBUG[2025-07-26 16:01:55.172][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:01:55.173][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:01:55.174][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:01:55.178][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:01:55.179][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:01:55.180][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:01:55.180][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:01:55.181][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:55.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:55.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:55.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:55.185][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:55.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:55.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:55.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:55.188][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:01:55.189][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-07-26 16:01:55.190][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-26 16:01:55.191][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-26 16:01:55.192][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:01:55.193][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:55.194][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:55.195][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:55.195][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:55.196][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:55.197][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:55.198][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:55.199][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:55.200][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:01:55.201][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:01:55.202][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:55.203][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:55.203][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:55.204][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:55.205][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-26 16:01:55.206][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:55.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:55.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:55.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:55.210][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:55.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:55.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:55.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:55.213][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:55.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:55.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:55.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:55.217][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [65648].
biodb.DEBUG[2025-07-26 16:01:55.218][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-07-26 16:01:55.219][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2025-07-26 16:01:55.226][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-07-26 16:01:55.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-07-26 16:01:55.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:55.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:55.229][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-07-26 16:01:55.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-07-26 16:01:55.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:55.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:55.233][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-07-26 16:01:55.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-07-26 16:01:55.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:55.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-07-26 16:01:55.239][biodb::testThat]
biodb.INFO [2025-07-26 16:01:55.240][biodb::testThat] Running test function  test_annotateMzValues_ppm_tol  (" ppm tolerance works in annotateMzValues() ").
biodb.INFO [2025-07-26 16:01:55.241][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-07-26 16:01:55.242][biodb::testThat]
biodb.TRACE[2025-07-26 16:01:55.244][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-07-26 16:01:55.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-07-26 16:01:55.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:55.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:55.248][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-07-26 16:01:55.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-07-26 16:01:55.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:55.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:55.252][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-07-26 16:01:55.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-07-26 16:01:55.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:55.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:55.255][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:55.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:55.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:55.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:55.259][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:55.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:55.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:55.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:55.263][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:55.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:55.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:55.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:55.266][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:55.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:55.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:55.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:55.270][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:55.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:55.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:55.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:55.274][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:55.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:55.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:55.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:55.277][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:55.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:55.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:55.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:55.281][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:55.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:55.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:55.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:55.284][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:55.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:55.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:55.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:55.288][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:55.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:55.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:55.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:55.292][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:55.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:55.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:55.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:55.295][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:55.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:55.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:55.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:01:55.301][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:01:55.302][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:01:55.303][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:01:55.307][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:01:55.308][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:01:55.308][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:01:55.309][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-07-26 16:01:55.312][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-07-26 16:01:55.314][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-07-26 16:01:55.316][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/8fc54eee7e982ce554bee8000d8203f7.content.
sched.DEBUG[2025-07-26 16:01:55.317][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-07-26 16:01:55.319][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:01:55.320][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:01:55.321][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:01:55.325][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:01:55.325][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:01:55.326][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:01:55.327][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:01:55.328][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:55.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:55.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:55.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:55.332][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:55.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:55.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:55.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:55.336][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:55.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:55.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:55.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
sched.DEBUG[2025-07-26 16:01:55.340][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-07-26 16:01:55.342][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-07-26 16:01:55.344][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/6def615835d7c1dfccd5a5f135bd2f9d.content.
sched.DEBUG[2025-07-26 16:01:55.345][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-07-26 16:01:55.347][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:01:55.348][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:01:55.349][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:01:55.353][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:01:55.353][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:01:55.354][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:01:55.355][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:01:55.356][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:55.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:55.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:55.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:55.360][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:55.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:55.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:55.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:55.364][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:55.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:55.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:55.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:01:55.367][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:01:55.368][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:01:55.369][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:01:55.373][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:01:55.374][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:01:55.375][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:01:55.375][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:01:55.376][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:55.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:55.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:55.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:55.380][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:55.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:55.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:55.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:55.384][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:55.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:55.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:55.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:01:55.388][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-07-26 16:01:55.389][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:01:55.390][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:01:55.391][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:01:55.399][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:01:55.399][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:01:55.400][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:01:55.401][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:01:55.402][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:55.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:55.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:55.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:55.406][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:55.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:55.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:55.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:55.409][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:01:55.410][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-07-26 16:01:55.411][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-26 16:01:55.412][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-26 16:01:55.413][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:01:55.414][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:55.415][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:55.416][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:55.416][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:55.417][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:55.418][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:55.419][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:55.420][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:55.421][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:01:55.422][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:01:55.423][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:55.424][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:55.424][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:55.425][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:55.426][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-26 16:01:55.427][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:55.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:55.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:55.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:55.431][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:55.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:55.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:55.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:55.434][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:55.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:55.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:55.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:55.438][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [192288].
biodb.DEBUG[2025-07-26 16:01:55.439][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:01:55.440][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:01:55.441][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:01:55.445][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:01:55.445][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:01:55.446][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:01:55.447][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:01:55.448][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:55.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:55.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:55.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:55.452][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:55.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:55.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:55.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:55.455][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:01:55.456][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-07-26 16:01:55.457][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-26 16:01:55.458][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-26 16:01:55.459][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:01:55.460][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:55.461][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:55.461][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:55.462][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:55.463][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:55.464][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:55.465][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:55.466][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:55.467][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:01:55.468][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:01:55.468][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:55.469][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:55.470][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:55.471][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:55.472][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-26 16:01:55.473][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:55.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:55.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:55.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:55.476][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:55.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:55.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:55.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:55.480][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:55.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:55.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:55.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:55.484][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2025-07-26 16:01:55.485][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:01:55.486][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:01:55.487][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:01:55.490][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:01:55.491][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:01:55.492][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:01:55.493][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:01:55.494][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:55.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:55.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:55.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:55.498][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:55.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:55.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:55.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:55.501][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:01:55.502][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-07-26 16:01:55.503][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-26 16:01:55.504][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-26 16:01:55.505][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:01:55.506][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:55.507][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:55.507][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:55.508][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:55.509][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:55.510][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:55.511][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:55.512][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:55.513][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:01:55.514][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:01:55.515][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:55.516][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:55.516][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:55.517][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:55.518][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-26 16:01:55.519][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:55.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:55.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:55.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:55.523][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:55.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:55.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:55.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:55.526][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:55.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:55.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:55.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:55.530][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [209892].
biodb.DEBUG[2025-07-26 16:01:55.531][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-07-26 16:01:55.532][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-07-26 16:01:55.534][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:01:55.535][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:01:55.536][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:01:55.540][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:01:55.541][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:01:55.542][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:01:55.542][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-07-26 16:01:55.545][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-07-26 16:01:55.547][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-07-26 16:01:55.549][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/013adb879cee6d4257067df9ba0a8c7b.content.
sched.DEBUG[2025-07-26 16:01:55.550][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-07-26 16:01:55.552][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:01:55.553][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:01:55.554][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:01:55.558][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:01:55.558][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:01:55.559][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:01:55.560][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:01:55.561][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:55.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:55.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:55.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:55.565][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:55.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:55.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:55.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:55.568][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:55.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:55.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:55.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:01:55.572][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:01:55.573][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:01:55.574][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:01:55.578][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:01:55.579][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:01:55.579][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:01:55.580][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:01:55.581][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:55.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:55.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:55.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:55.585][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:55.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:55.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:55.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:55.588][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:55.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:55.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:55.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
sched.DEBUG[2025-07-26 16:01:55.593][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.63*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-07-26 16:01:55.595][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-07-26 16:01:55.598][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/d37a10a1f6afae785eb4d1943c254641.content.
sched.DEBUG[2025-07-26 16:01:55.599][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-07-26 16:01:55.601][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:01:55.602][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:01:55.603][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:01:55.607][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:01:55.608][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:01:55.608][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:01:55.609][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:01:55.610][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:55.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:55.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:55.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:55.614][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:55.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:55.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:55.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:55.618][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:55.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:55.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:55.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:01:55.621][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:01:55.622][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:01:55.623][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:01:55.627][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:01:55.628][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:01:55.628][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:01:55.629][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:01:55.630][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:55.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:55.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:55.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:55.634][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:55.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:55.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:55.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:55.638][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:55.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:55.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:55.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:01:55.641][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:01:55.642][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:01:55.643][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:01:55.647][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:01:55.648][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:01:55.652][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:01:55.653][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:01:55.654][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:55.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:55.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:55.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:55.658][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:55.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:55.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:55.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:55.661][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:55.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:55.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:55.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:01:55.665][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-07-26 16:01:55.666][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:01:55.667][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:01:55.668][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:01:55.672][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:01:55.672][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:01:55.673][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:01:55.674][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:01:55.675][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:55.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:55.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:55.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:55.679][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:55.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:55.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:55.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:55.682][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:01:55.683][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-07-26 16:01:55.684][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-26 16:01:55.685][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-26 16:01:55.686][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:01:55.687][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:55.688][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:55.688][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:55.689][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:55.690][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:55.691][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:55.692][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:55.693][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:55.694][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:01:55.695][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:01:55.695][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:55.696][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:55.697][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:55.698][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:55.699][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-26 16:01:55.700][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:55.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:55.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:55.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:55.703][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:55.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:55.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:55.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:55.707][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:55.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:55.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:55.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:55.711][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2025-07-26 16:01:55.712][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:01:55.713][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:01:55.713][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:01:55.717][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:01:55.718][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:01:55.719][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:01:55.720][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:01:55.721][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:55.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:55.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:55.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:55.724][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:55.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:55.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:55.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:55.728][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:01:55.729][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-07-26 16:01:55.730][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-26 16:01:55.730][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-26 16:01:55.731][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:01:55.732][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:55.733][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:55.734][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:55.735][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:55.736][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:55.737][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:55.738][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:55.738][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:55.739][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:01:55.740][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:01:55.741][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:55.742][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:55.743][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:55.744][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:55.745][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-26 16:01:55.746][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:55.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:55.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:55.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:55.756][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:55.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:55.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:55.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:55.760][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:55.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:55.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:55.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:55.765][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [16587].
biodb.DEBUG[2025-07-26 16:01:55.766][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:01:55.767][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:01:55.768][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:01:55.774][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:01:55.775][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:01:55.776][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:01:55.777][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:01:55.779][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:55.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:55.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:55.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:55.783][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:55.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:55.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:55.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:55.787][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:01:55.788][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-07-26 16:01:55.789][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-26 16:01:55.790][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-26 16:01:55.791][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:01:55.792][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:55.793][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:55.794][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:55.795][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:55.796][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:55.798][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:55.799][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:55.800][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:55.801][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:01:55.802][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:01:55.803][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:55.804][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:55.805][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:55.806][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:55.807][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-26 16:01:55.808][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:55.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:55.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:55.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:55.812][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:55.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:55.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:55.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:55.816][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:55.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:55.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:55.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:55.820][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [19804].
biodb.DEBUG[2025-07-26 16:01:55.821][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-07-26 16:01:55.822][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-07-26 16:01:55.825][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:01:55.826][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:01:55.827][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:01:55.831][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:01:55.832][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:01:55.833][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:01:55.834][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-07-26 16:01:55.837][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-07-26 16:01:55.840][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-07-26 16:01:55.843][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/e0540b0a9d3ba75ce1522ce23f76319e.content.
sched.DEBUG[2025-07-26 16:01:55.844][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-07-26 16:01:55.847][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:01:55.847][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:01:55.848][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:01:55.853][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:01:55.854][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:01:55.855][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:01:55.856][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:01:55.857][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:55.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:55.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:55.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:55.861][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:55.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:55.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:55.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:55.865][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:55.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:55.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:55.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:01:55.869][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:01:55.870][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:01:55.871][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:01:55.875][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:01:55.876][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:01:55.877][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:01:55.878][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:01:55.879][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:55.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:55.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:55.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:55.883][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:55.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:55.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:55.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:55.887][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:55.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:55.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:55.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:01:55.891][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:01:55.892][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:01:55.893][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:01:55.898][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:01:55.899][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:01:55.900][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:01:55.901][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:01:55.902][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:55.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:55.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:55.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:55.906][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:55.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:55.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:55.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:55.910][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:55.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:55.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:55.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
sched.DEBUG[2025-07-26 16:01:55.915][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.4*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-07-26 16:01:55.917][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-07-26 16:01:55.924][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/9e2d7a19ee9cad83d9ec98e38ff7728c.content.
sched.DEBUG[2025-07-26 16:01:55.925][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-07-26 16:01:55.931][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:01:55.932][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:01:55.933][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:01:55.947][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:01:55.948][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:01:55.949][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:01:55.950][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:01:55.951][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:55.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:55.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:55.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:55.955][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:55.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:55.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:55.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:55.959][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:55.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:55.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:55.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:01:55.963][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:01:55.964][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:01:55.964][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:01:55.969][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:01:55.969][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:01:55.970][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:01:55.971][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-26 16:01:55.972][private$loadEntries] Creating entries from ids [1]: "3017".
biodb.DEBUG[2025-07-26 16:01:55.973][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-26 16:01:55.975][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-26 16:01:55.979][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/3017.xml.
biodb.DEBUG[2025-07-26 16:01:55.980][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-26 16:01:55.982][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-26 16:01:55.983][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-26 16:01:55.984][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:01:55.985][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:01:55.986][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:01:55.990][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:01:55.991][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:01:55.992][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:01:55.993][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:01:55.995][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:55.996][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:55.997][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:55.998][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:55.999][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:56.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:56.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:56.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:56.003][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:01:56.004][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:01:56.005][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:56.006][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:56.007][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:01:56.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:01:56.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:56.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:56.011][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:01:56.012][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:01:56.013][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:56.014][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:56.015][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:01:56.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:01:56.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:56.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:56.019][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:01:56.020][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:01:56.021][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:56.022][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:56.023][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:01:56.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:01:56.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:56.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:56.027][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:01:56.028][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:01:56.029][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:56.030][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:56.031][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:01:56.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:01:56.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:56.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:56.035][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:01:56.036][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:01:56.037][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:56.038][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:56.040][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:01:56.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:01:56.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:56.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:56.044][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-26 16:01:56.045][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:56.046][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:56.046][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:56.048][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-26 16:01:56.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:56.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:56.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:56.052][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:56.053][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:56.054][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:56.054][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:56.056][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:56.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:56.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:56.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:56.059][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:01:56.060][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:01:56.061][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:56.062][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:56.063][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:01:56.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:01:56.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:56.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:56.067][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-26 16:01:56.068][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:01:56.069][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:56.070][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:56.071][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-26 16:01:56.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:01:56.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:56.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:56.074][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:01:56.075][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:01:56.076][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:56.077][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:56.078][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:01:56.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:01:56.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:56.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:56.082][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:56.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:56.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:56.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:56.086][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:56.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:56.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:56.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:56.089][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:56.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:56.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:56.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:56.093][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:56.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:56.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:56.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:56.096][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:56.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:56.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:56.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:56.100][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:56.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:56.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:56.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:56.104][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:56.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:56.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:56.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:56.108][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:56.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:56.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:56.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:56.111][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:56.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:56.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:56.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:56.115][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:56.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:56.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:56.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:01:56.118][self$createEntryFromContent] Accession numbers: 3017.
biodb.TRACE[2025-07-26 16:01:56.119][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:56.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:56.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:56.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:56.123][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:56.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:56.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:56.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:56.127][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:56.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:56.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:56.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:01:56.130][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:01:56.131][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:01:56.132][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:01:56.136][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:01:56.137][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:01:56.138][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:01:56.139][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-26 16:01:56.140][private$loadEntries] Creating entries from ids [1]: "3510".
biodb.DEBUG[2025-07-26 16:01:56.141][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-26 16:01:56.142][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-26 16:01:56.147][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/3510.xml.
biodb.DEBUG[2025-07-26 16:01:56.148][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-26 16:01:56.149][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-26 16:01:56.150][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-26 16:01:56.151][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:01:56.152][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:01:56.153][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:01:56.157][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:01:56.158][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:01:56.159][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:01:56.159][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:01:56.161][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:56.162][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:56.163][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:56.164][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:56.165][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:56.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:56.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:56.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:56.169][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:01:56.170][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:01:56.171][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:56.172][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:56.173][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:01:56.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:01:56.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:56.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:56.177][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:01:56.177][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:01:56.178][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:56.179][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:56.181][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:01:56.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:01:56.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:56.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:56.184][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:01:56.185][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:01:56.186][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:56.187][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:56.188][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:01:56.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:01:56.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:56.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:56.192][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:01:56.193][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:01:56.194][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:56.194][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:56.196][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:01:56.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:01:56.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:56.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:56.199][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:01:56.200][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:01:56.201][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:56.202][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:56.203][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:01:56.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:01:56.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:56.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:56.207][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-26 16:01:56.208][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:56.209][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:56.210][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:56.215][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-26 16:01:56.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:56.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:56.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:56.219][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:56.219][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:56.220][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:56.221][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:56.222][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:56.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:56.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:56.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:56.226][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:01:56.227][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:01:56.228][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:56.229][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:56.230][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:01:56.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:01:56.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:56.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:56.234][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-26 16:01:56.234][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:01:56.235][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:56.236][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:56.237][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-26 16:01:56.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:01:56.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:56.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:56.241][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:01:56.242][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:01:56.243][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:56.244][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:56.245][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:01:56.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:01:56.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:56.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:56.248][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:56.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:56.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:56.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:56.252][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:56.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:56.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:56.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:56.255][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:56.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:56.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:56.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:56.259][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:56.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:56.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:56.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:56.263][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:56.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:56.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:56.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:56.266][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:56.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:56.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:56.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:56.270][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:56.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:56.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:56.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:56.273][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:56.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:56.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:56.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:56.277][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:56.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:56.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:56.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:56.280][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:56.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:56.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:56.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:01:56.284][self$createEntryFromContent] Accession numbers: 3510.
biodb.TRACE[2025-07-26 16:01:56.285][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:56.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:56.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:56.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:56.289][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:56.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:56.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:56.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:56.292][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:56.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:56.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:56.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:01:56.296][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:01:56.297][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:01:56.297][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:01:56.301][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:01:56.302][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:01:56.303][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:01:56.304][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-26 16:01:56.305][private$loadEntries] Creating entries from ids [1]: "7554".
biodb.DEBUG[2025-07-26 16:01:56.306][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-26 16:01:56.307][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-26 16:01:56.311][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7554.xml.
biodb.DEBUG[2025-07-26 16:01:56.312][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-26 16:01:56.313][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-26 16:01:56.314][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-26 16:01:56.316][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:01:56.317][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:01:56.317][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:01:56.321][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:01:56.322][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:01:56.323][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:01:56.324][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:01:56.326][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:56.327][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:56.328][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:56.328][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:56.330][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:56.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:56.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:56.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:56.333][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:01:56.334][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:01:56.335][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:56.336][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:56.337][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:01:56.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:01:56.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:56.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:56.341][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:01:56.342][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:01:56.343][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:56.344][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:56.345][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:01:56.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:01:56.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:56.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:56.348][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:01:56.349][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:01:56.350][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:56.351][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:56.352][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:01:56.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:01:56.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:56.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:56.356][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:01:56.357][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:01:56.358][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:56.359][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:56.360][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:01:56.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:01:56.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:56.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:56.364][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:01:56.365][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:01:56.365][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:56.366][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:56.367][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:01:56.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:01:56.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:56.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:56.371][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-26 16:01:56.372][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:56.373][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:56.374][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:56.375][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-26 16:01:56.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:56.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:56.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:56.379][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:56.380][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:56.381][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:56.381][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:56.383][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:56.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:56.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:56.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:56.386][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:01:56.387][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:01:56.388][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:56.389][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:56.390][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:01:56.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:01:56.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:56.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:56.394][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-26 16:01:56.395][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:01:56.396][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:56.397][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:56.398][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-26 16:01:56.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:01:56.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:56.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:56.401][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:01:56.402][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:01:56.403][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:56.404][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:56.405][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:01:56.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:01:56.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:56.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:56.409][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:56.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:56.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:56.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:56.413][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:56.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:56.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:56.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:56.416][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:56.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:56.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:56.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:56.420][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:56.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:56.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:56.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:56.424][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:56.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:56.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:56.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:56.427][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:56.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:56.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:56.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:56.431][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:56.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:56.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:56.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:56.435][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:56.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:56.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:56.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:56.438][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:56.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:56.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:56.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:56.442][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:56.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:56.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:56.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:01:56.446][self$createEntryFromContent] Accession numbers: 7554.
biodb.TRACE[2025-07-26 16:01:56.447][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:56.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:56.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:56.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:56.450][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:56.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:56.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:56.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:56.454][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:56.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:56.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:56.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:01:56.458][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-07-26 16:01:56.459][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:01:56.460][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:01:56.461][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:01:56.469][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:01:56.470][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:01:56.471][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:01:56.472][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:01:56.473][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:56.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:56.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:56.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:56.477][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:56.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:56.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:56.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:56.480][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:01:56.481][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-07-26 16:01:56.482][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-26 16:01:56.483][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-26 16:01:56.484][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:01:56.485][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:56.486][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:56.486][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:56.487][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:56.488][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:56.489][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:56.490][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:56.491][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:56.492][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:01:56.493][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:01:56.493][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:56.494][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:56.495][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:56.496][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:56.497][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-26 16:01:56.498][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:56.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:56.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:56.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:56.501][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:56.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:56.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:56.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:56.505][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:56.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:56.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:56.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:56.509][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [7799].
biodb.DEBUG[2025-07-26 16:01:56.510][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:01:56.511][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:01:56.511][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:01:56.515][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:01:56.516][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:01:56.517][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:01:56.518][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:01:56.519][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:56.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:56.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:56.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:56.522][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:56.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:56.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:56.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:56.526][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:01:56.527][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-07-26 16:01:56.528][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-26 16:01:56.529][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-26 16:01:56.529][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:01:56.530][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:56.531][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:56.532][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:56.533][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:56.534][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:56.535][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:56.536][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:56.536][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:56.537][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:01:56.538][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:01:56.539][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:56.540][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:56.541][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:56.542][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:56.543][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-26 16:01:56.544][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:56.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:56.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:56.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:56.547][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:56.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:56.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:56.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:56.551][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:56.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:56.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:56.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:56.555][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [3017].
biodb.DEBUG[2025-07-26 16:01:56.556][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:01:56.556][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:01:56.557][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:01:56.561][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:01:56.562][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:01:56.563][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:01:56.564][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:01:56.565][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:56.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:56.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:56.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:56.568][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:56.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:56.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:56.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:56.572][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:01:56.573][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-07-26 16:01:56.574][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-26 16:01:56.575][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-26 16:01:56.575][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:01:56.576][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:56.577][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:56.578][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:56.579][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:56.580][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:56.581][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:56.582][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:56.583][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:56.584][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:01:56.585][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:01:56.585][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:56.586][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:56.587][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:56.588][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:56.589][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-26 16:01:56.590][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:56.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:56.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:56.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:56.594][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:56.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:56.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:56.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:56.597][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:56.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:56.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:56.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:56.601][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [7554].
biodb.DEBUG[2025-07-26 16:01:56.602][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-07-26 16:01:56.603][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2025-07-26 16:01:56.611][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:56.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:56.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:56.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:56.614][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:56.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:56.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:56.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:56.618][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:56.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:56.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:56.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:56.622][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:56.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:56.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:56.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:56.626][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:56.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:56.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:56.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:56.629][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:56.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:56.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:56.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:56.633][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:56.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:56.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:56.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:56.637][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:56.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:56.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:56.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:56.640][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:56.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:56.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:56.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:56.644][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:56.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:56.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:56.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:56.648][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:56.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:56.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:56.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:56.651][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:56.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:56.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:56.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:01:56.657][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:01:56.658][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:01:56.659][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:01:56.663][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:01:56.664][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:01:56.664][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:01:56.665][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-07-26 16:01:56.668][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-07-26 16:01:56.670][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-07-26 16:01:56.672][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/2e865a03592d6effdf242ff63104f35a.content.
sched.DEBUG[2025-07-26 16:01:56.672][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
sched.DEBUG[2025-07-26 16:01:56.675][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-07-26 16:01:56.677][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-07-26 16:01:56.680][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/f0c73645ca32490f91d503a462d812b2.content.
sched.DEBUG[2025-07-26 16:01:56.680][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-07-26 16:01:56.683][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:01:56.684][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:01:56.684][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:01:56.688][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:01:56.689][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:01:56.690][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:01:56.691][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:01:56.692][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:56.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:56.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:56.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:56.696][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:56.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:56.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:56.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:56.699][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:56.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:56.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:56.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:01:56.703][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:01:56.704][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:01:56.705][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:01:56.708][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:01:56.709][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:01:56.710][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:01:56.711][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:01:56.712][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:56.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:56.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:56.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:56.716][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:56.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:56.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:56.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:56.723][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:56.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:56.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:56.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:01:56.727][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:01:56.728][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:01:56.729][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:01:56.733][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:01:56.734][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:01:56.735][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:01:56.736][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:01:56.737][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:56.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:56.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:56.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:56.740][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:56.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:56.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:56.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:56.744][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:56.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:56.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:56.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:01:56.748][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-07-26 16:01:56.749][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:01:56.750][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:01:56.751][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:01:56.754][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:01:56.755][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:01:56.756][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:01:56.757][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:01:56.758][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:56.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:56.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:56.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:56.762][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:56.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:56.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:56.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:56.765][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:01:56.766][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-07-26 16:01:56.767][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-26 16:01:56.768][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-26 16:01:56.769][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:01:56.770][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:56.770][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:56.771][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:56.772][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:56.773][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:56.774][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:56.775][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:56.776][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:56.777][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:01:56.777][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:01:56.778][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:56.779][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:56.780][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:56.781][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:56.782][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-26 16:01:56.783][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:56.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:56.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:56.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:56.786][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:56.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:56.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:56.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:56.790][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:56.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:56.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:56.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:56.794][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4648].
biodb.DEBUG[2025-07-26 16:01:56.795][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:01:56.796][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:01:56.796][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:01:56.800][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:01:56.801][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:01:56.802][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:01:56.803][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:01:56.804][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:56.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:56.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:56.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:56.807][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:56.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:56.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:56.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:56.811][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:01:56.812][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-07-26 16:01:56.813][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-26 16:01:56.814][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-26 16:01:56.815][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:01:56.815][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:56.816][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:56.817][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:56.818][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:56.819][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:56.820][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:56.821][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:56.822][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:56.823][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:01:56.824][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:01:56.824][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:56.825][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:56.826][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:56.827][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:56.828][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-26 16:01:56.829][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:56.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:56.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:56.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:56.833][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:56.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:56.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:56.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:56.836][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:56.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:56.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:56.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:56.840][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2025-07-26 16:01:56.841][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:01:56.842][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:01:56.843][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:01:56.847][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:01:56.848][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:01:56.849][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:01:56.849][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:01:56.851][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:56.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:56.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:56.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:56.854][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:56.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:56.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:56.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:56.858][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:01:56.859][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-07-26 16:01:56.860][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-26 16:01:56.860][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-26 16:01:56.861][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:01:56.862][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:56.863][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:56.864][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:56.865][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:56.866][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:56.867][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:56.868][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:56.869][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:56.869][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:01:56.870][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:01:56.871][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:56.872][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:56.873][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:56.874][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:56.875][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-26 16:01:56.876][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:56.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:56.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:56.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:56.879][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:56.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:56.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:56.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:56.883][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:56.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:56.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:56.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:56.887][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [62447].
biodb.DEBUG[2025-07-26 16:01:56.888][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-07-26 16:01:56.889][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-07-26 16:01:56.891][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:01:56.891][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:01:56.892][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:01:56.896][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:01:56.897][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:01:56.898][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:01:56.899][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-07-26 16:01:56.901][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.3*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-07-26 16:01:56.904][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-07-26 16:01:56.908][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/ca8f292aaf9d7e19110a4d4f8e8081db.content.
sched.DEBUG[2025-07-26 16:01:56.909][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-07-26 16:01:56.912][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:01:56.913][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:01:56.913][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:01:56.917][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:01:56.918][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:01:56.919][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:01:56.920][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:01:56.921][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:56.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:56.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:56.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:56.925][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:56.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:56.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:56.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:56.928][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:56.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:56.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:56.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:01:56.932][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:01:56.933][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:01:56.934][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:01:56.937][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:01:56.938][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:01:56.939][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:01:56.940][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:01:56.941][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:56.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:56.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:56.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:56.945][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:56.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:56.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:56.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:56.948][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:56.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:56.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:56.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:01:56.952][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:01:56.953][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:01:56.954][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:01:56.957][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:01:56.958][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:01:56.959][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:01:56.960][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-26 16:01:56.961][private$loadEntries] Creating entries from ids [1]: "27495".
biodb.DEBUG[2025-07-26 16:01:56.962][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-26 16:01:56.963][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-26 16:01:56.968][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/27495.xml.
biodb.DEBUG[2025-07-26 16:01:56.968][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-26 16:01:56.970][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-26 16:01:56.971][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-26 16:01:56.972][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:01:56.973][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:01:56.974][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:01:56.982][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:01:56.983][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:01:56.984][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:01:56.984][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:01:56.986][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:56.987][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:56.988][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:56.989][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:56.990][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:56.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:56.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:56.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:56.994][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:01:56.995][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:01:56.996][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:56.996][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:56.998][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:01:56.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:01:56.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:57.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:57.001][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:01:57.002][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:01:57.003][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:57.004][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:57.005][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:01:57.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:01:57.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:57.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:57.009][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:01:57.010][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:01:57.011][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:57.011][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:57.012][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:01:57.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:01:57.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:57.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:57.016][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:01:57.017][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:01:57.018][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:57.019][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:57.020][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:01:57.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:01:57.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:57.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:57.023][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:01:57.024][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:01:57.025][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:57.026][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:57.027][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:01:57.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:01:57.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:57.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:57.031][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-26 16:01:57.032][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:57.033][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:57.033][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:57.035][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-26 16:01:57.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:57.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:57.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:57.038][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:57.039][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:57.040][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:57.041][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:57.042][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:57.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:57.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:57.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:57.046][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:01:57.046][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:01:57.047][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:57.048][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:57.049][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:01:57.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:01:57.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:57.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:57.053][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-26 16:01:57.054][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:01:57.055][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:57.056][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:57.057][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-26 16:01:57.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:01:57.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:57.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:57.060][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:01:57.061][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:01:57.062][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:57.063][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:57.064][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:01:57.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:01:57.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:57.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:57.068][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:57.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:57.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:57.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:57.071][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:57.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:57.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:57.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:57.075][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:57.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:57.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:57.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:57.078][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:57.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:57.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:57.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:57.082][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:57.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:57.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:57.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:57.086][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:57.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:57.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:57.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:57.089][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:57.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:57.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:57.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:57.093][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:57.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:57.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:57.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:57.097][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:57.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:57.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:57.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:57.100][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:57.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:57.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:57.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:01:57.104][self$createEntryFromContent] Accession numbers: 27495.
biodb.TRACE[2025-07-26 16:01:57.105][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:57.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:57.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:57.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:57.109][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:57.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:57.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:57.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:57.112][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:57.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:57.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:57.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:01:57.116][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-07-26 16:01:57.117][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:01:57.118][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:01:57.119][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:01:57.123][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:01:57.124][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:01:57.125][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:01:57.126][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:01:57.127][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:57.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:57.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:57.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:57.130][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:57.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:57.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:57.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:57.134][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:01:57.135][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-07-26 16:01:57.136][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-26 16:01:57.137][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-26 16:01:57.138][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:01:57.138][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:57.139][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:57.140][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:57.141][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:57.142][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:57.143][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:57.144][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:57.145][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:57.146][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:01:57.147][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:01:57.147][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:57.148][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:57.149][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:57.150][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:57.151][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-26 16:01:57.152][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:57.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:57.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:57.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:57.156][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:57.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:57.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:57.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:57.159][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:57.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:57.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:57.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:57.163][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [16587].
biodb.DEBUG[2025-07-26 16:01:57.164][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:01:57.165][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:01:57.166][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:01:57.170][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:01:57.171][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:01:57.171][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:01:57.172][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:01:57.173][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:57.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:57.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:57.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:57.177][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:57.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:57.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:57.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:57.181][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:01:57.182][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-07-26 16:01:57.182][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-26 16:01:57.183][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-26 16:01:57.184][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:01:57.185][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:57.186][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:57.187][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:57.188][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:57.189][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:57.190][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:57.190][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:57.191][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:57.192][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:01:57.193][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:01:57.194][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:57.195][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:57.196][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:57.197][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:57.198][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-26 16:01:57.199][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:57.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:57.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:57.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:57.202][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:57.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:57.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:57.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:57.206][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:57.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:57.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:57.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:57.210][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [19804].
biodb.DEBUG[2025-07-26 16:01:57.211][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:01:57.212][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:01:57.212][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:01:57.217][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:01:57.217][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:01:57.218][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:01:57.219][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:01:57.220][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:57.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:57.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:57.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:57.224][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:57.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:57.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:57.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:57.231][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:01:57.232][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-07-26 16:01:57.233][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-26 16:01:57.234][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-26 16:01:57.235][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:01:57.236][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:57.237][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:57.238][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:57.238][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:57.239][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:57.240][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:57.241][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:57.242][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:57.243][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:01:57.244][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:01:57.245][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:57.246][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:57.246][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:57.247][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:57.248][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-26 16:01:57.249][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:57.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:57.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:57.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:57.253][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:57.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:57.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:57.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:57.256][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:57.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:57.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:57.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:57.260][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [27495].
biodb.DEBUG[2025-07-26 16:01:57.261][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-07-26 16:01:57.262][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-07-26 16:01:57.264][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:01:57.264][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:01:57.265][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:01:57.269][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:01:57.270][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:01:57.271][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:01:57.272][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-07-26 16:01:57.274][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.17*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-07-26 16:01:57.276][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-07-26 16:01:57.280][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/039d0a183be9e894c19f49abb7cadca8.content.
sched.DEBUG[2025-07-26 16:01:57.281][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-07-26 16:01:57.283][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:01:57.284][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:01:57.285][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:01:57.289][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:01:57.289][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:01:57.290][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:01:57.291][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:01:57.292][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:57.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:57.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:57.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:57.296][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:57.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:57.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:57.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:57.299][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:57.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:57.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:57.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:01:57.303][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:01:57.304][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:01:57.305][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:01:57.309][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:01:57.309][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:01:57.310][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:01:57.311][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:01:57.312][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:57.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:57.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:57.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:57.316][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:57.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:57.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:57.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:57.319][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:57.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:57.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:57.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:01:57.323][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:01:57.324][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:01:57.325][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:01:57.328][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:01:57.329][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:01:57.330][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:01:57.331][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:01:57.332][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:57.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:57.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:57.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:57.335][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:57.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:57.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:57.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:57.339][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:57.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:57.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:57.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:01:57.343][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:01:57.344][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:01:57.344][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:01:57.348][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:01:57.349][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:01:57.350][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:01:57.351][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-26 16:01:57.352][private$loadEntries] Creating entries from ids [1]: "65675".
biodb.DEBUG[2025-07-26 16:01:57.353][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-26 16:01:57.354][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-26 16:01:57.358][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/65675.xml.
biodb.DEBUG[2025-07-26 16:01:57.359][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-26 16:01:57.360][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-26 16:01:57.361][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-26 16:01:57.363][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:01:57.364][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:01:57.365][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:01:57.368][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:01:57.369][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:01:57.370][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:01:57.371][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:01:57.373][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:57.374][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:57.375][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:57.376][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:57.377][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:57.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:57.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:57.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:57.381][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:01:57.382][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:01:57.383][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:57.383][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:57.385][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:01:57.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:01:57.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:57.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:57.388][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:01:57.389][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:01:57.390][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:57.391][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:57.392][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:01:57.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:01:57.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:57.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:57.396][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:01:57.397][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:01:57.398][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:57.399][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:57.400][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:01:57.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:01:57.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:57.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:57.404][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:01:57.405][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:01:57.406][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:57.406][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:57.408][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:01:57.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:01:57.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:57.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:57.411][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:01:57.412][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:01:57.413][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:57.414][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:57.415][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-26 16:01:57.416][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:57.417][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:57.418][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:57.419][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-26 16:01:57.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:57.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:57.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:57.423][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:57.424][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:57.425][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:57.425][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:57.426][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:57.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:57.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:57.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:57.430][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:01:57.431][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:01:57.432][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:57.433][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:57.434][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:01:57.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:01:57.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:57.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:57.438][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-26 16:01:57.439][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:01:57.440][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:57.441][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:57.442][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-26 16:01:57.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:01:57.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:57.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:57.445][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:01:57.446][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:01:57.447][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:57.448][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:57.449][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:01:57.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:01:57.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:57.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:57.453][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:57.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:57.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:57.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:57.457][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:57.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:57.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:57.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:57.460][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:57.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:57.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:57.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:57.464][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:57.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:57.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:57.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:57.467][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:57.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:57.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:57.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:57.471][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:57.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:57.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:57.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:57.475][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:57.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:57.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:57.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:57.478][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:57.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:57.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:57.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:57.482][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:57.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:57.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:57.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:57.494][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:57.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:57.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:57.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:01:57.498][self$createEntryFromContent] Accession numbers: 65675.
biodb.TRACE[2025-07-26 16:01:57.499][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:57.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:57.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:57.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:57.503][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:57.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:57.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:57.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:57.506][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:57.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:57.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:57.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:01:57.510][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:01:57.511][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:01:57.511][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:01:57.515][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:01:57.516][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:01:57.517][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:01:57.518][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-26 16:01:57.519][private$loadEntries] Creating entries from ids [1]: "66318".
biodb.DEBUG[2025-07-26 16:01:57.520][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-26 16:01:57.521][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-26 16:01:57.526][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/66318.xml.
biodb.DEBUG[2025-07-26 16:01:57.527][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-26 16:01:57.528][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-26 16:01:57.529][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-26 16:01:57.531][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:01:57.531][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:01:57.532][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:01:57.536][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:01:57.537][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:01:57.538][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:01:57.538][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:01:57.541][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:57.542][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:57.543][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:57.543][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:57.545][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:57.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:57.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:57.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:57.548][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:01:57.549][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:01:57.550][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:57.551][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:57.552][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:01:57.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:01:57.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:57.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:57.556][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:01:57.557][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:01:57.557][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:57.558][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:57.559][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:01:57.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:01:57.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:57.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:57.563][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:01:57.564][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:01:57.565][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:57.566][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:57.567][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:01:57.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:01:57.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:57.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:57.570][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:01:57.571][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:01:57.572][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:57.573][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:57.574][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:01:57.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:01:57.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:57.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:57.578][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:01:57.579][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:01:57.580][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:57.581][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:57.582][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-26 16:01:57.583][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:57.583][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:57.584][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:57.585][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-26 16:01:57.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:57.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:57.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:57.589][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:57.590][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:57.591][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:57.592][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:57.593][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:57.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:57.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:57.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:57.597][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:01:57.597][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:01:57.598][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:57.599][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:57.600][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:01:57.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:01:57.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:57.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:57.604][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-26 16:01:57.605][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:01:57.606][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:57.607][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:57.608][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-26 16:01:57.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:01:57.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:57.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:57.612][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:01:57.613][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:01:57.613][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:57.614][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:57.615][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:01:57.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:01:57.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:57.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:57.619][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:57.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:57.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:57.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:57.623][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:57.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:57.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:57.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:57.627][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:57.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:57.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:57.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:57.630][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:57.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:57.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:57.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:57.634][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:57.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:57.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:57.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:57.638][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:57.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:57.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:57.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:57.641][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:57.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:57.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:57.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:57.645][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:57.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:57.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:57.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:57.649][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:57.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:57.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:57.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:57.652][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:57.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:57.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:57.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:01:57.656][self$createEntryFromContent] Accession numbers: 66318.
biodb.TRACE[2025-07-26 16:01:57.657][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:57.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:57.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:57.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:57.661][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:57.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:57.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:57.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:57.664][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:57.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:57.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:57.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:01:57.668][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:01:57.669][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:01:57.669][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:01:57.674][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:01:57.674][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:01:57.675][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:01:57.676][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-26 16:01:57.677][private$loadEntries] Creating entries from ids [1]: "67547".
biodb.DEBUG[2025-07-26 16:01:57.678][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-26 16:01:57.679][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-26 16:01:57.684][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/67547.xml.
biodb.DEBUG[2025-07-26 16:01:57.685][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-26 16:01:57.686][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-26 16:01:57.687][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-26 16:01:57.688][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:01:57.689][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:01:57.690][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:01:57.694][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:01:57.695][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:01:57.696][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:01:57.697][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:01:57.699][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:57.700][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:57.700][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:57.701][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:57.702][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:57.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:57.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:57.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:57.706][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:01:57.707][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:01:57.708][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:57.709][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:57.710][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:01:57.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:01:57.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:57.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:57.714][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:01:57.715][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:01:57.716][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:57.716][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:57.718][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:01:57.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:01:57.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:57.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:57.721][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:01:57.722][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:01:57.723][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:57.724][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:57.725][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:01:57.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:01:57.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:57.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:57.729][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:01:57.730][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:01:57.731][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:57.732][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:57.733][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:01:57.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:01:57.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:57.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:57.736][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:01:57.737][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:01:57.738][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:57.739][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:57.740][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:01:57.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:01:57.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:57.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:57.744][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-26 16:01:57.745][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:57.746][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:57.747][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:57.748][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-26 16:01:57.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:57.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:57.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:57.756][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:57.757][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:57.758][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:57.759][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:57.760][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:57.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:57.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:57.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:57.763][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:01:57.764][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:01:57.765][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:57.766][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:57.767][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:01:57.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:01:57.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:57.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:57.771][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-26 16:01:57.772][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:01:57.773][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:57.774][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:57.775][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-26 16:01:57.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:01:57.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:57.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:57.778][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:01:57.779][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:01:57.780][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:57.781][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:57.782][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:01:57.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:01:57.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:57.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:57.786][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:57.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:57.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:57.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:57.789][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:57.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:57.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:57.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:57.793][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:57.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:57.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:57.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:57.797][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:57.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:57.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:57.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:57.800][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:57.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:57.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:57.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:57.804][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:57.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:57.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:57.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:57.807][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:57.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:57.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:57.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:57.811][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:57.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:57.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:57.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:57.815][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:57.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:57.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:57.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:57.818][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:57.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:57.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:57.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:01:57.822][self$createEntryFromContent] Accession numbers: 67547.
biodb.TRACE[2025-07-26 16:01:57.823][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:57.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:57.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:57.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:57.826][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:57.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:57.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:57.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:57.830][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:57.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:57.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:57.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:01:57.833][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:01:57.834][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:01:57.835][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:01:57.839][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:01:57.840][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:01:57.841][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:01:57.842][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-26 16:01:57.843][private$loadEntries] Creating entries from ids [1]: "69550".
biodb.DEBUG[2025-07-26 16:01:57.843][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-26 16:01:57.845][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-26 16:01:57.849][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/69550.xml.
biodb.DEBUG[2025-07-26 16:01:57.850][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-26 16:01:57.851][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-26 16:01:57.852][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-26 16:01:57.854][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:01:57.855][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:01:57.855][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:01:57.859][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:01:57.860][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:01:57.861][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:01:57.862][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:01:57.864][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:57.865][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:57.866][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:57.867][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:57.868][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:57.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:57.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:57.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:57.872][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:01:57.873][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:01:57.873][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:57.874][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:57.875][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:01:57.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:01:57.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:57.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:57.879][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:01:57.880][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:01:57.881][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:57.882][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:57.883][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:01:57.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:01:57.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:57.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:57.887][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:01:57.888][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:01:57.889][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:57.890][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:57.891][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:01:57.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:01:57.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:57.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:57.894][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:01:57.895][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:01:57.896][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:57.897][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:57.898][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:01:57.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:01:57.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:57.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:57.902][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:01:57.903][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:01:57.904][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:57.905][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:57.906][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-26 16:01:57.907][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:57.908][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:57.909][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:57.910][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-26 16:01:57.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:57.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:57.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:57.914][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:57.915][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:57.916][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:57.916][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:57.918][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:57.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:57.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:57.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:57.922][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:01:57.922][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:01:57.923][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:57.924][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:57.926][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:01:57.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:01:57.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:57.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:57.929][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-26 16:01:57.930][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:01:57.931][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:57.932][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:57.933][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-26 16:01:57.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:01:57.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:57.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:57.937][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:01:57.938][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:01:57.939][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:57.940][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:57.941][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:01:57.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:01:57.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:57.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:57.945][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:57.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:57.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:57.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:57.948][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:57.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:57.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:57.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:57.952][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:57.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:57.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:57.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:57.956][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:57.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:57.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:57.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:57.959][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:57.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:57.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:57.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:57.963][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:57.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:57.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:57.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:57.967][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:57.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:57.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:57.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:57.970][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:57.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:57.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:57.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:57.974][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:57.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:57.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:57.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:57.978][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:57.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:57.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:57.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:01:57.981][self$createEntryFromContent] Accession numbers: 69550.
biodb.TRACE[2025-07-26 16:01:57.982][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:57.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:57.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:57.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:57.986][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:57.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:57.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:57.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:57.990][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:57.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:57.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:57.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:01:57.993][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:01:57.994][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:01:57.995][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:01:57.999][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:01:58.000][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:01:58.001][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:01:58.002][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-26 16:01:58.003][private$loadEntries] Creating entries from ids [1]: "71520".
biodb.DEBUG[2025-07-26 16:01:58.004][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-26 16:01:58.005][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-26 16:01:58.009][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/71520.xml.
biodb.DEBUG[2025-07-26 16:01:58.010][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-26 16:01:58.012][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-26 16:01:58.017][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-26 16:01:58.019][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:01:58.019][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:01:58.020][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:01:58.024][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:01:58.025][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:01:58.026][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:01:58.027][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:01:58.029][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:58.030][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:58.031][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:58.032][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:58.033][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:58.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:58.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:58.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:58.036][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:01:58.037][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:01:58.038][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:58.039][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:58.040][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:01:58.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:01:58.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:58.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:58.044][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:01:58.045][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:01:58.046][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:58.047][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:58.048][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:01:58.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:01:58.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:58.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:58.051][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:01:58.052][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:01:58.053][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:58.054][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:58.055][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:01:58.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:01:58.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:58.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:58.059][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:01:58.060][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:01:58.061][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:58.062][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:58.063][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:01:58.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:01:58.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:58.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:58.067][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:01:58.067][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:01:58.068][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:58.069][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:58.070][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-26 16:01:58.071][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:58.072][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:58.073][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:58.074][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-26 16:01:58.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:58.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:58.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:58.078][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:58.079][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:58.080][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:58.080][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:58.082][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:58.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:58.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:58.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:58.085][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:01:58.086][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:01:58.087][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:58.088][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:58.089][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:01:58.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:01:58.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:58.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:58.093][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-26 16:01:58.094][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:01:58.095][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:58.096][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:58.097][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-26 16:01:58.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:01:58.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:58.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:58.100][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:01:58.101][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:01:58.102][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:58.103][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:58.104][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:01:58.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:01:58.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:58.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:58.108][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:58.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:58.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:58.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:58.111][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:58.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:58.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:58.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:58.115][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:58.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:58.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:58.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:58.119][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:58.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:58.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:58.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:58.122][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:58.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:58.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:58.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:58.126][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:58.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:58.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:58.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:58.129][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:58.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:58.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:58.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:58.133][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:58.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:58.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:58.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:58.137][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:58.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:58.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:58.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:58.141][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:58.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:58.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:58.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:01:58.144][self$createEntryFromContent] Accession numbers: 71520.
biodb.TRACE[2025-07-26 16:01:58.145][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:58.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:58.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:58.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:58.149][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:58.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:58.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:58.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:58.153][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:58.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:58.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:58.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:01:58.156][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:01:58.157][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:01:58.158][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:01:58.162][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:01:58.163][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:01:58.164][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:01:58.164][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-26 16:01:58.165][private$loadEntries] Creating entries from ids [1]: "77600".
biodb.DEBUG[2025-07-26 16:01:58.166][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-26 16:01:58.168][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-26 16:01:58.171][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/77600.xml.
biodb.DEBUG[2025-07-26 16:01:58.172][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-26 16:01:58.174][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-26 16:01:58.175][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-26 16:01:58.176][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:01:58.177][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:01:58.178][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:01:58.182][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:01:58.183][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:01:58.183][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:01:58.184][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:01:58.186][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:58.187][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:58.188][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:58.189][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:58.190][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:58.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:58.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:58.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:58.194][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:01:58.195][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:01:58.196][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:58.197][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:58.198][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:01:58.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:01:58.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:58.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:58.202][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:01:58.203][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:01:58.203][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:58.204][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:58.205][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:01:58.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:01:58.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:58.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:58.209][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:01:58.210][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:01:58.211][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:58.212][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:58.213][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:01:58.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:01:58.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:58.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:58.217][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:01:58.218][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:01:58.219][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:58.219][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:58.221][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:01:58.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:01:58.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:58.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:58.224][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:01:58.225][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:01:58.226][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:58.227][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:58.228][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-26 16:01:58.229][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:58.230][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:58.231][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:58.232][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-26 16:01:58.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:58.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:58.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:58.236][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:58.237][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:58.237][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:58.238][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:58.239][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:58.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:58.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:58.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:58.243][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:01:58.244][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:01:58.245][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:58.246][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:58.247][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:01:58.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:01:58.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:58.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:58.251][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-26 16:01:58.252][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:01:58.253][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:58.253][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:58.255][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-26 16:01:58.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:01:58.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:58.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:58.258][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:01:58.259][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:01:58.260][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:58.261][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:58.262][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:01:58.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:01:58.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:58.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:58.266][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:58.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:58.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:58.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:58.270][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:58.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:58.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:58.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:58.278][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:58.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:58.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:58.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:58.281][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:58.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:58.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:58.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:58.285][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:58.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:58.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:58.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:58.289][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:58.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:58.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:58.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:58.292][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:58.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:58.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:58.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:58.296][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:58.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:58.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:58.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:58.300][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:58.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:58.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:58.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:58.303][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:58.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:58.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:58.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:01:58.307][self$createEntryFromContent] Accession numbers: 77600.
biodb.TRACE[2025-07-26 16:01:58.308][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:58.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:58.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:58.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:58.311][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:58.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:58.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:58.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:58.315][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:58.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:58.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:58.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:01:58.318][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:01:58.319][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:01:58.320][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:01:58.324][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:01:58.325][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:01:58.326][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:01:58.327][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-26 16:01:58.328][private$loadEntries] Creating entries from ids [1]: "77601".
biodb.DEBUG[2025-07-26 16:01:58.329][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-26 16:01:58.330][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-26 16:01:58.334][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/77601.xml.
biodb.DEBUG[2025-07-26 16:01:58.335][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-26 16:01:58.336][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-26 16:01:58.337][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-26 16:01:58.338][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:01:58.339][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:01:58.340][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:01:58.344][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:01:58.345][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:01:58.345][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:01:58.346][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:01:58.348][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:58.349][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:58.350][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:58.351][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:58.352][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:58.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:58.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:58.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:58.356][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:01:58.357][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:01:58.358][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:58.359][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:58.360][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:01:58.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:01:58.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:58.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:58.363][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:01:58.364][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:01:58.365][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:58.366][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:58.367][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:01:58.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:01:58.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:58.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:58.371][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:01:58.372][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:01:58.373][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:58.374][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:58.375][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:01:58.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:01:58.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:58.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:58.378][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:01:58.379][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:01:58.380][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:58.381][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:58.382][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:01:58.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:01:58.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:58.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:58.386][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:01:58.387][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:01:58.387][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:58.388][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:58.389][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-26 16:01:58.390][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:58.391][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:58.392][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:58.393][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-26 16:01:58.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:58.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:58.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:58.397][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:58.398][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:58.399][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:58.400][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:58.401][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:58.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:58.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:58.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:58.405][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:01:58.405][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:01:58.406][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:58.407][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:58.408][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:01:58.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:01:58.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:58.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:58.412][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-26 16:01:58.413][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:01:58.414][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:58.415][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:58.416][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-26 16:01:58.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:01:58.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:58.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:58.420][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:01:58.421][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:01:58.421][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:58.422][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:58.423][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:01:58.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:01:58.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:58.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:58.427][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:58.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:58.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:58.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:58.431][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:58.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:58.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:58.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:58.434][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:58.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:58.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:58.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:58.438][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:58.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:58.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:58.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:58.442][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:58.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:58.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:58.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:58.445][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:58.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:58.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:58.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:58.449][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:58.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:58.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:58.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:58.453][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:58.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:58.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:58.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:58.456][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:58.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:58.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:58.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:58.460][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:01:58.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:01:58.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:58.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:01:58.464][self$createEntryFromContent] Accession numbers: 77601.
biodb.TRACE[2025-07-26 16:01:58.465][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:58.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:58.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:58.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:58.468][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:58.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:58.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:58.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:58.472][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:58.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:58.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:58.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:01:58.476][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-07-26 16:01:58.477][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:01:58.478][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:01:58.479][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:01:58.483][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:01:58.484][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:01:58.485][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:01:58.486][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:01:58.487][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:58.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:58.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:58.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:58.490][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:58.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:58.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:58.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:58.494][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:01:58.495][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-07-26 16:01:58.496][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-26 16:01:58.497][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-26 16:01:58.497][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:01:58.498][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:58.499][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:58.500][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:58.501][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:58.502][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:58.503][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:58.504][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:58.505][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:58.506][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:01:58.506][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:01:58.507][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:58.508][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:58.509][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:58.510][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:58.511][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-26 16:01:58.512][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:58.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:58.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:58.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:58.516][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:58.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:58.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:58.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:58.519][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:58.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:58.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:58.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:58.523][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [64199].
biodb.DEBUG[2025-07-26 16:01:58.524][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:01:58.525][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:01:58.526][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:01:58.534][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:01:58.535][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:01:58.536][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:01:58.537][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:01:58.538][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:58.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:58.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:58.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:58.542][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:58.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:58.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:58.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:58.545][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:01:58.546][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-07-26 16:01:58.547][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-26 16:01:58.548][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-26 16:01:58.549][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:01:58.549][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:58.550][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:58.551][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:58.552][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:58.553][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:58.554][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:58.555][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:58.556][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:58.557][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:01:58.557][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:01:58.558][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:58.559][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:58.560][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:58.561][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:58.562][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-26 16:01:58.563][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:58.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:58.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:58.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:58.566][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:58.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:58.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:58.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:58.570][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:58.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:58.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:58.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:58.574][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [77600].
biodb.DEBUG[2025-07-26 16:01:58.575][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:01:58.575][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:01:58.576][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:01:58.580][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:01:58.581][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:01:58.582][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:01:58.583][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:01:58.584][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:58.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:58.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:58.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:58.587][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:58.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:58.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:58.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:58.591][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:01:58.592][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-07-26 16:01:58.593][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-26 16:01:58.593][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-26 16:01:58.594][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:01:58.595][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:58.596][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:58.597][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:58.598][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:58.599][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:58.600][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:58.601][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:58.601][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:58.602][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:01:58.603][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:01:58.604][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:58.605][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:58.606][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:58.607][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:58.608][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-26 16:01:58.608][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:58.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:58.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:58.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:58.612][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:58.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:58.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:58.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:58.616][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:58.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:58.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:58.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:58.620][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [77601].
biodb.DEBUG[2025-07-26 16:01:58.620][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-07-26 16:01:58.621][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2025-07-26 16:01:58.628][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-07-26 16:01:58.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-07-26 16:01:58.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:58.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:58.632][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-07-26 16:01:58.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-07-26 16:01:58.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:58.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:58.636][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-07-26 16:01:58.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-07-26 16:01:58.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:58.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-07-26 16:01:58.642][biodb::testThat]
biodb.INFO [2025-07-26 16:01:58.643][biodb::testThat] Running test function  test_annotateMzValues_input_dataframe_untouched  (" Input data frame is not modified by annotateMzValues() ").
biodb.INFO [2025-07-26 16:01:58.644][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-07-26 16:01:58.645][biodb::testThat]
biodb.TRACE[2025-07-26 16:01:58.647][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-07-26 16:01:58.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-07-26 16:01:58.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:58.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:58.651][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-07-26 16:01:58.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-07-26 16:01:58.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:58.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:58.655][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-07-26 16:01:58.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-07-26 16:01:58.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:58.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:58.658][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:58.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:58.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:58.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:58.662][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:58.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:58.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:58.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:58.666][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:58.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:58.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:58.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:58.669][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:58.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:58.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:58.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:58.673][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:58.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:58.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:58.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:58.677][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:58.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:58.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:58.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:58.680][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:58.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:58.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:58.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:58.684][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:58.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:58.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:58.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:58.688][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:58.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:58.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:58.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:58.691][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:58.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:58.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:58.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:58.695][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:58.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:58.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:58.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:58.699][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:58.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:58.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:58.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:01:58.706][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:01:58.707][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:01:58.707][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:01:58.711][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:01:58.712][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:01:58.713][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:01:58.714][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-07-26 16:01:58.716][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-07-26 16:01:58.719][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-07-26 16:01:58.720][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/8fc54eee7e982ce554bee8000d8203f7.content.
sched.DEBUG[2025-07-26 16:01:58.721][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-07-26 16:01:58.723][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:01:58.724][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:01:58.725][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:01:58.729][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:01:58.730][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:01:58.731][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:01:58.731][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:01:58.732][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:58.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:58.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:58.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:58.736][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:58.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:58.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:58.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:58.740][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:58.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:58.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:58.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
sched.DEBUG[2025-07-26 16:01:58.744][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-07-26 16:01:58.746][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-07-26 16:01:58.748][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/6def615835d7c1dfccd5a5f135bd2f9d.content.
sched.DEBUG[2025-07-26 16:01:58.749][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-07-26 16:01:58.751][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:01:58.752][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:01:58.753][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:01:58.757][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:01:58.758][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:01:58.759][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:01:58.760][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:01:58.761][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:58.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:58.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:58.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:58.764][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:58.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:58.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:58.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:58.768][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:58.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:58.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:58.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:01:58.772][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:01:58.773][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:01:58.773][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:01:58.777][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:01:58.778][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:01:58.779][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:01:58.780][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:01:58.781][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:58.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:58.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:58.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:58.789][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:58.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:58.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:58.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:58.793][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:58.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:58.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:58.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:01:58.797][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-07-26 16:01:58.798][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:01:58.799][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:01:58.800][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:01:58.804][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:01:58.804][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:01:58.805][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:01:58.806][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:01:58.807][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:58.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:58.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:58.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:58.811][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:58.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:58.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:58.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:58.814][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:01:58.815][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-07-26 16:01:58.816][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-26 16:01:58.817][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-26 16:01:58.818][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:01:58.819][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:58.820][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:58.820][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:58.821][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:58.822][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:58.823][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:58.824][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:58.825][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:58.826][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:01:58.827][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:01:58.828][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:58.829][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:58.829][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:58.830][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:58.831][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-26 16:01:58.832][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:58.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:58.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:58.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:58.836][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:58.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:58.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:58.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:58.839][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:58.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:58.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:58.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:58.843][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [192288].
biodb.DEBUG[2025-07-26 16:01:58.844][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:01:58.845][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:01:58.846][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:01:58.850][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:01:58.851][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:01:58.852][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:01:58.852][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:01:58.854][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:58.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:58.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:58.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:58.857][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:58.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:58.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:58.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:58.861][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:01:58.862][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-07-26 16:01:58.862][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-26 16:01:58.863][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-26 16:01:58.864][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:01:58.865][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:58.866][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:58.867][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:58.868][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:58.869][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:58.870][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:58.870][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:58.871][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:58.872][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:01:58.873][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:01:58.874][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:58.875][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:58.876][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:58.877][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:58.878][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-26 16:01:58.879][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:58.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:58.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:58.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:58.882][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:58.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:58.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:58.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:58.886][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:58.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:58.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:58.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:58.890][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2025-07-26 16:01:58.891][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:01:58.891][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:01:58.892][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:01:58.896][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:01:58.897][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:01:58.898][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:01:58.899][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:01:58.900][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:58.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:58.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:58.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:58.904][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:58.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:58.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:58.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:58.907][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:01:58.908][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-07-26 16:01:58.909][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-26 16:01:58.910][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-26 16:01:58.911][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:01:58.912][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:58.913][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:58.913][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:58.914][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:58.915][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:58.916][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:58.917][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:58.918][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:58.919][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:01:58.920][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:01:58.921][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:58.922][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:58.922][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:58.923][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:58.924][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-26 16:01:58.925][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:58.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:58.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:58.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:58.929][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:58.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:58.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:58.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:58.932][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:58.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:58.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:58.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:58.936][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [209892].
biodb.DEBUG[2025-07-26 16:01:58.937][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-07-26 16:01:58.938][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-07-26 16:01:58.940][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:01:58.941][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:01:58.942][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:01:58.946][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:01:58.947][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:01:58.948][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:01:58.948][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-07-26 16:01:58.951][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-07-26 16:01:58.953][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-07-26 16:01:58.955][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/013adb879cee6d4257067df9ba0a8c7b.content.
sched.DEBUG[2025-07-26 16:01:58.956][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-07-26 16:01:58.958][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:01:58.959][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:01:58.960][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:01:58.964][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:01:58.965][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:01:58.965][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:01:58.966][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:01:58.967][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:58.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:58.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:58.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:58.971][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:58.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:58.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:58.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:58.975][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:58.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:58.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:58.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:01:58.978][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:01:58.979][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:01:58.980][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:01:58.984][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:01:58.985][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:01:58.986][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:01:58.986][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:01:58.987][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:58.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:58.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:58.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:58.991][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:58.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:58.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:58.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:58.995][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:58.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:58.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:58.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
sched.DEBUG[2025-07-26 16:01:58.999][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.63*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-07-26 16:01:59.001][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-07-26 16:01:59.004][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/d37a10a1f6afae785eb4d1943c254641.content.
sched.DEBUG[2025-07-26 16:01:59.005][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-07-26 16:01:59.008][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:01:59.008][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:01:59.009][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:01:59.013][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:01:59.014][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:01:59.015][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:01:59.016][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:01:59.017][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:59.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:59.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:59.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:59.020][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:59.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:59.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:59.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:59.024][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:59.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:59.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:59.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:01:59.028][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:01:59.029][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:01:59.029][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:01:59.033][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:01:59.034][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:01:59.035][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:01:59.036][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:01:59.037][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:59.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:59.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:59.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:59.045][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:59.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:59.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:59.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:59.049][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:59.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:59.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:59.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:01:59.052][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:01:59.054][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:01:59.055][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:01:59.059][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:01:59.059][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:01:59.060][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:01:59.061][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:01:59.062][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:59.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:59.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:59.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:59.066][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:59.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:59.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:59.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:59.069][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:59.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:59.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:59.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:01:59.073][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-07-26 16:01:59.075][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:01:59.075][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:01:59.076][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:01:59.080][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:01:59.081][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:01:59.082][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:01:59.083][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:01:59.084][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:59.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:59.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:59.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:59.087][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:59.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:59.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:59.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:59.091][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:01:59.092][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-07-26 16:01:59.093][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-26 16:01:59.094][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-26 16:01:59.095][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:01:59.095][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:59.096][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:59.097][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:59.098][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:59.099][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:59.100][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:59.101][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:59.102][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:59.103][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:01:59.103][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:01:59.104][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:59.105][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:59.106][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:59.107][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:59.108][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-26 16:01:59.109][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:59.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:59.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:59.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:59.112][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:59.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:59.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:59.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:59.116][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:59.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:59.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:59.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:59.120][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2025-07-26 16:01:59.121][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:01:59.122][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:01:59.122][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:01:59.127][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:01:59.127][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:01:59.128][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:01:59.129][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:01:59.130][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:59.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:59.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:59.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:59.134][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:59.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:59.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:59.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:59.137][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:01:59.138][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-07-26 16:01:59.139][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-26 16:01:59.140][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-26 16:01:59.141][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:01:59.142][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:59.143][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:59.144][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:59.145][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:59.145][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:59.146][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:59.147][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:59.148][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:59.149][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:01:59.150][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:01:59.151][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:59.152][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:59.153][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:59.154][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:59.154][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-26 16:01:59.155][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:59.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:59.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:59.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:59.159][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:59.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:59.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:59.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:59.163][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:59.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:59.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:59.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:59.167][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [16587].
biodb.DEBUG[2025-07-26 16:01:59.168][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:01:59.169][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:01:59.169][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:01:59.174][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:01:59.174][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:01:59.175][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:01:59.176][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:01:59.177][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:59.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:59.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:59.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:59.181][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:59.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:59.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:59.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:59.185][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:01:59.185][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-07-26 16:01:59.186][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-26 16:01:59.187][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-26 16:01:59.188][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:01:59.189][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:59.190][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:59.191][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:59.192][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:59.193][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:59.194][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:59.194][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:59.195][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:59.196][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:01:59.197][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:01:59.198][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:59.199][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:59.200][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:59.201][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:59.202][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-26 16:01:59.203][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:59.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:59.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:59.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:59.206][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:59.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:59.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:59.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:59.210][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:59.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:59.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:59.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:59.214][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [19804].
biodb.DEBUG[2025-07-26 16:01:59.215][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-07-26 16:01:59.216][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-07-26 16:01:59.218][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:01:59.219][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:01:59.220][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:01:59.224][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:01:59.225][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:01:59.225][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:01:59.226][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-07-26 16:01:59.229][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-07-26 16:01:59.231][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-07-26 16:01:59.233][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/618204bc3e9a685033db1d9be9d78d44.content.
sched.DEBUG[2025-07-26 16:01:59.234][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-07-26 16:01:59.237][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:01:59.238][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:01:59.239][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:01:59.243][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:01:59.244][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:01:59.244][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:01:59.245][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:01:59.246][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:59.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:59.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:59.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:59.250][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:59.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:59.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:59.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:59.254][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:59.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:59.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:59.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:01:59.257][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:01:59.258][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:01:59.259][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:01:59.263][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:01:59.264][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:01:59.265][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:01:59.265][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:01:59.267][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:59.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:59.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:59.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:59.270][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:59.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:59.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:59.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:59.274][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:59.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:59.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:59.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:01:59.278][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:01:59.278][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:01:59.279][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:01:59.283][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:01:59.284][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:01:59.285][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:01:59.286][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:01:59.287][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:59.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:59.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:59.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:59.290][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:59.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:59.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:59.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:59.298][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:59.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:59.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:59.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:01:59.302][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:01:59.303][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:01:59.304][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:01:59.308][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:01:59.309][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:01:59.309][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:01:59.310][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:01:59.311][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:59.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:59.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:59.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:59.315][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:59.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:59.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:59.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:59.318][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:59.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:59.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:59.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:01:59.322][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:01:59.323][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:01:59.324][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:01:59.328][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:01:59.328][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:01:59.329][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:01:59.330][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:01:59.331][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:59.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:59.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:59.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:59.335][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:59.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:59.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:59.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:59.338][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:59.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:59.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:59.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:01:59.342][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:01:59.343][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:01:59.344][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:01:59.347][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:01:59.348][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:01:59.349][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:01:59.350][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:01:59.351][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:59.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:59.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:59.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:59.355][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:59.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:59.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:59.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:59.358][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:59.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:59.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:59.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:01:59.362][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:01:59.363][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:01:59.363][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:01:59.367][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:01:59.368][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:01:59.369][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:01:59.370][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:01:59.371][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:59.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:59.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:59.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:59.375][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:59.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:59.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:59.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:59.378][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:59.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:59.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:59.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:01:59.382][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:01:59.383][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:01:59.383][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:01:59.387][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:01:59.388][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:01:59.389][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:01:59.390][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:01:59.391][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:59.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:59.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:59.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:59.395][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:59.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:59.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:59.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:59.398][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:59.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:59.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:59.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
sched.DEBUG[2025-07-26 16:01:59.402][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-07-26 16:01:59.405][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-07-26 16:01:59.407][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/e0540b0a9d3ba75ce1522ce23f76319e.content.
sched.DEBUG[2025-07-26 16:01:59.408][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-07-26 16:01:59.410][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:01:59.410][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:01:59.411][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:01:59.415][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:01:59.416][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:01:59.417][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:01:59.418][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:01:59.419][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:59.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:59.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:59.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:59.423][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:59.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:59.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:59.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:59.426][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:59.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:59.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:59.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:01:59.430][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:01:59.431][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:01:59.432][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:01:59.435][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:01:59.436][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:01:59.437][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:01:59.438][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:01:59.439][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:59.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:59.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:59.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:59.443][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:59.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:59.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:59.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:59.446][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:59.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:59.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:59.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:01:59.450][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:01:59.451][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:01:59.452][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:01:59.456][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:01:59.457][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:01:59.458][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:01:59.459][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:01:59.460][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:59.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:59.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:59.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:59.463][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:59.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:59.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:59.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:59.467][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:59.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:01:59.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:59.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:01:59.471][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-07-26 16:01:59.472][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:01:59.473][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:01:59.474][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:01:59.478][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:01:59.479][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:01:59.480][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:01:59.481][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:01:59.482][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:59.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:59.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:59.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:59.485][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:59.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:59.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:59.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:59.489][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:01:59.490][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-07-26 16:01:59.491][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-26 16:01:59.492][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-26 16:01:59.493][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:01:59.494][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:59.495][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:59.495][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:59.496][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:59.497][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:59.498][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:59.499][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:59.500][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:59.501][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:01:59.502][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:01:59.503][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:59.504][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:59.504][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:59.505][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:59.506][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-26 16:01:59.507][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:59.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:59.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:59.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:59.511][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:59.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:59.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:59.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:59.514][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:59.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:59.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:59.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:59.518][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [7799].
biodb.DEBUG[2025-07-26 16:01:59.519][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:01:59.520][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:01:59.521][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:01:59.525][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:01:59.526][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:01:59.527][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:01:59.528][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:01:59.529][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:59.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:59.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:59.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:59.532][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:59.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:59.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:59.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:59.536][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:01:59.537][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-07-26 16:01:59.538][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-26 16:01:59.539][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-26 16:01:59.540][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:01:59.541][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:59.541][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:59.542][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:59.543][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:59.544][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:59.545][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:59.546][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:59.547][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:59.548][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:01:59.553][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:01:59.554][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:59.555][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:59.556][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:59.557][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:59.558][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-26 16:01:59.559][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:59.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:59.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:59.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:59.562][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:59.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:59.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:59.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:59.566][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:59.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:59.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:59.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:59.570][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [71954].
biodb.DEBUG[2025-07-26 16:01:59.571][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:01:59.572][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:01:59.572][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:01:59.576][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:01:59.577][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:01:59.578][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:01:59.579][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:01:59.580][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:59.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:59.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:59.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:59.584][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:59.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:59.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:59.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:59.587][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:01:59.588][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-07-26 16:01:59.589][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-26 16:01:59.590][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-26 16:01:59.591][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:01:59.591][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:59.592][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:59.593][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:59.594][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:59.595][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:59.596][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:59.597][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:59.598][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:59.599][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:01:59.599][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:01:59.600][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:59.601][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:59.602][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:59.603][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:59.604][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-26 16:01:59.605][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:59.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:59.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:59.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:59.608][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:59.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:59.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:59.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:59.612][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:59.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:59.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:59.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:59.616][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [197612].
biodb.DEBUG[2025-07-26 16:01:59.617][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-07-26 16:01:59.618][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2025-07-26 16:01:59.633][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:59.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:59.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:59.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:59.637][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:59.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:59.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:59.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:59.640][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:59.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:59.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:59.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:59.644][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:59.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:59.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:59.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:59.648][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:59.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:59.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:59.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:59.651][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:59.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:59.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:59.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:59.655][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:59.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:59.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:59.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:59.658][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:59.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:59.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:59.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:59.662][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:59.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:59.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:59.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:59.666][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:59.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:59.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:59.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:59.669][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:59.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:59.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:59.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:59.673][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:59.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:59.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:59.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:01:59.680][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:01:59.681][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:01:59.681][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:01:59.685][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:01:59.686][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:01:59.687][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:01:59.688][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-07-26 16:01:59.690][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-07-26 16:01:59.693][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-07-26 16:01:59.694][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/2e865a03592d6effdf242ff63104f35a.content.
sched.DEBUG[2025-07-26 16:01:59.695][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
sched.DEBUG[2025-07-26 16:01:59.698][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-07-26 16:01:59.700][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-07-26 16:01:59.702][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/f0c73645ca32490f91d503a462d812b2.content.
sched.DEBUG[2025-07-26 16:01:59.703][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-07-26 16:01:59.705][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:01:59.706][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:01:59.707][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:01:59.711][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:01:59.712][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:01:59.712][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:01:59.713][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:01:59.714][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:59.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:59.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:59.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:59.718][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:59.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:59.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:59.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:59.722][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:59.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:59.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:59.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:01:59.725][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:01:59.726][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:01:59.727][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:01:59.731][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:01:59.732][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:01:59.732][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:01:59.733][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:01:59.734][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:59.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:59.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:59.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:59.738][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:59.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:59.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:59.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:59.742][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:59.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:59.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:59.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:01:59.745][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:01:59.746][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:01:59.747][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:01:59.751][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:01:59.752][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:01:59.752][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:01:59.753][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:01:59.754][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:59.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:59.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:59.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:59.758][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:59.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:59.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:59.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:59.762][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:59.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:59.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:59.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:01:59.765][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-07-26 16:01:59.767][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:01:59.768][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:01:59.769][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:01:59.772][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:01:59.773][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:01:59.774][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:01:59.775][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:01:59.776][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:59.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:59.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:59.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:59.780][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:59.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:59.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:59.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:59.784][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:01:59.784][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-07-26 16:01:59.785][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-26 16:01:59.786][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-26 16:01:59.787][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:01:59.788][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:59.789][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:59.790][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:59.791][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:59.792][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:59.793][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:59.793][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:59.794][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:59.795][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:01:59.796][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:01:59.797][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:59.798][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:59.799][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:59.800][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:59.805][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-26 16:01:59.806][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:59.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:59.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:59.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:59.810][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:59.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:59.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:59.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:59.814][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:59.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:59.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:59.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:59.817][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4648].
biodb.DEBUG[2025-07-26 16:01:59.818][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:01:59.819][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:01:59.820][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:01:59.824][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:01:59.825][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:01:59.826][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:01:59.827][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:01:59.828][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:59.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:59.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:59.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:59.831][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:59.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:59.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:59.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:59.835][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:01:59.836][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-07-26 16:01:59.837][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-26 16:01:59.837][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-26 16:01:59.838][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:01:59.839][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:59.840][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:59.841][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:59.842][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:59.843][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:59.844][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:59.845][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:59.845][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:59.846][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:01:59.847][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:01:59.848][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:59.849][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:59.850][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:59.851][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:59.852][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-26 16:01:59.853][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:59.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:59.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:59.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:59.856][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:59.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:59.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:59.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:59.860][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:59.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:59.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:59.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:59.864][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2025-07-26 16:01:59.865][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:01:59.866][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:01:59.866][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:01:59.870][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:01:59.871][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:01:59.872][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:01:59.873][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:01:59.874][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:59.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:59.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:59.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:59.878][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:59.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:59.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:59.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:59.881][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:01:59.882][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-07-26 16:01:59.883][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-26 16:01:59.884][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-26 16:01:59.885][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:01:59.885][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:59.886][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:59.887][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:59.888][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:59.889][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:59.890][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:59.891][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:59.892][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:59.893][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:01:59.894][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:01:59.894][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:59.895][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:59.896][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:59.897][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:59.898][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-26 16:01:59.899][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:59.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:59.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:59.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:59.903][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:59.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:59.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:59.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:59.906][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:01:59.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:01:59.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:59.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:59.910][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [62447].
biodb.DEBUG[2025-07-26 16:01:59.911][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-07-26 16:01:59.912][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-07-26 16:01:59.914][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:01:59.915][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:01:59.915][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:01:59.919][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:01:59.920][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:01:59.921][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:01:59.922][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-07-26 16:01:59.924][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.29*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-07-26 16:01:59.927][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-07-26 16:01:59.929][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/aad5aa7c63b98774a5df46d96a4e7cac.content.
sched.DEBUG[2025-07-26 16:01:59.930][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-07-26 16:01:59.933][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:01:59.933][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:01:59.934][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:01:59.938][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:01:59.939][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:01:59.940][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:01:59.941][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:01:59.942][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:59.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:59.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:59.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:59.946][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:59.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:59.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:59.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:59.949][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:59.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:59.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:59.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:01:59.953][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:01:59.954][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:01:59.955][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:01:59.959][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:01:59.960][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:01:59.960][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:01:59.961][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:01:59.962][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:59.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:59.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:59.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:59.966][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:59.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:59.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:59.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:59.970][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:59.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:59.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:59.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:01:59.973][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:01:59.974][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:01:59.975][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:01:59.979][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:01:59.980][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:01:59.981][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:01:59.981][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:01:59.982][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:59.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:59.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:59.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:59.986][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:59.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:59.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:59.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:01:59.990][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:59.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:01:59.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:01:59.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:01:59.994][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-07-26 16:01:59.995][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:01:59.996][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:01:59.997][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:00.001][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:00.002][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:00.002][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:00.003][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:00.004][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:00.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:00.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:00.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:00.008][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:00.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:00.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:00.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:00.012][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:00.013][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-07-26 16:02:00.013][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-26 16:02:00.014][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-26 16:02:00.015][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:00.016][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:00.017][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:00.018][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:00.019][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:00.020][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:00.021][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:00.022][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:00.023][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:00.023][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:00.024][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:00.025][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:00.026][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:00.027][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:00.028][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:00.029][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-26 16:02:00.030][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:00.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:00.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:00.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:00.034][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:00.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:00.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:00.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:00.037][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:00.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:00.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:00.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:00.041][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2025-07-26 16:02:00.042][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:00.043][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:00.044][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:00.048][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:00.049][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:00.050][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:00.051][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:00.052][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:00.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:00.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:00.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:00.060][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:00.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:00.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:00.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:00.064][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:00.065][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-07-26 16:02:00.066][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-26 16:02:00.066][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-26 16:02:00.067][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:00.068][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:00.069][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:00.070][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:00.071][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:00.072][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:00.073][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:00.074][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:00.074][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:00.075][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:00.076][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:00.077][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:00.078][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:00.079][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:00.080][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:00.081][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-26 16:02:00.082][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:00.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:00.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:00.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:00.085][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:00.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:00.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:00.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:00.089][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:00.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:00.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:00.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:00.093][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [91601].
biodb.DEBUG[2025-07-26 16:02:00.094][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:00.094][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:00.095][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:00.099][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:00.100][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:00.101][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:00.102][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:00.103][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:00.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:00.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:00.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:00.106][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:00.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:00.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:00.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:00.110][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:00.111][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-07-26 16:02:00.112][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-26 16:02:00.112][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-26 16:02:00.113][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:00.114][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:00.115][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:00.116][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:00.117][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:00.118][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:00.119][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:00.119][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:00.120][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:00.121][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:00.122][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:00.123][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:00.124][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:00.125][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:00.126][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:00.127][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-26 16:02:00.127][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:00.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:00.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:00.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:00.131][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:00.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:00.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:00.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:00.135][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:00.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:00.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:00.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:00.139][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [95147].
biodb.DEBUG[2025-07-26 16:02:00.139][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-07-26 16:02:00.140][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-07-26 16:02:00.142][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:00.143][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:00.144][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:00.148][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:00.149][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:00.149][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:00.150][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-07-26 16:02:00.153][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.17*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-07-26 16:02:00.155][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-07-26 16:02:00.159][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/039d0a183be9e894c19f49abb7cadca8.content.
sched.DEBUG[2025-07-26 16:02:00.160][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-07-26 16:02:00.162][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:00.163][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:00.164][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:00.168][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:00.169][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:00.169][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:00.170][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:00.171][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:00.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:00.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:00.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:00.175][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:00.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:00.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:00.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:00.179][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:00.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:00.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:00.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:00.182][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:00.183][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:00.184][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:00.188][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:00.189][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:00.190][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:00.190][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:00.191][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:00.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:00.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:00.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:00.195][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:00.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:00.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:00.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:00.199][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:00.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:00.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:00.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:00.203][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:00.203][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:00.204][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:00.208][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:00.209][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:00.210][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:00.211][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:00.212][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:00.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:00.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:00.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:00.215][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:00.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:00.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:00.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:00.219][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:00.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:00.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:00.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:00.223][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-07-26 16:02:00.224][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:00.225][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:00.226][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:00.230][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:00.231][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:00.231][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:00.232][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:00.233][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:00.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:00.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:00.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:00.237][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:00.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:00.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:00.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:00.241][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:00.241][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-07-26 16:02:00.242][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-26 16:02:00.243][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-26 16:02:00.244][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:00.245][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:00.246][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:00.247][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:00.248][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:00.249][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:00.250][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:00.250][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:00.251][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:00.252][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:00.253][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:00.254][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:00.255][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:00.256][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:00.257][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:00.258][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-26 16:02:00.259][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:00.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:00.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:00.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:00.262][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:00.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:00.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:00.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:00.266][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:00.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:00.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:00.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:00.270][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [636].
biodb.DEBUG[2025-07-26 16:02:00.271][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:00.272][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:00.273][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:00.277][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:00.278][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:00.278][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:00.279][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:00.280][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:00.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:00.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:00.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:00.284][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:00.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:00.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:00.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:00.288][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:00.289][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-07-26 16:02:00.289][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-26 16:02:00.290][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-26 16:02:00.291][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:00.292][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:00.293][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:00.294][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:00.295][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:00.296][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:00.297][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:00.298][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:00.298][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:00.299][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:00.300][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:00.301][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:00.302][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:00.303][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:00.304][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:00.305][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-26 16:02:00.306][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:00.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:00.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:00.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:00.314][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:00.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:00.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:00.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:00.318][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:00.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:00.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:00.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:00.322][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [64199].
biodb.DEBUG[2025-07-26 16:02:00.323][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:00.323][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:00.324][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:00.328][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:00.329][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:00.330][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:00.331][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:00.332][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:00.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:00.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:00.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:00.335][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:00.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:00.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:00.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:00.339][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:00.340][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-07-26 16:02:00.341][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-26 16:02:00.341][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-26 16:02:00.342][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:00.343][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:00.344][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:00.345][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:00.346][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:00.347][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:00.348][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:00.349][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:00.349][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:00.350][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:00.351][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:00.352][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:00.353][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:00.354][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:00.355][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:00.356][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-26 16:02:00.357][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:00.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:00.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:00.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:00.360][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:00.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:00.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:00.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:00.364][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:00.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:00.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:00.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:00.368][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [65648].
biodb.DEBUG[2025-07-26 16:02:00.369][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-07-26 16:02:00.369][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2025-07-26 16:02:00.385][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-07-26 16:02:00.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-07-26 16:02:00.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:00.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:00.389][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-07-26 16:02:00.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-07-26 16:02:00.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:00.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:00.392][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-07-26 16:02:00.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-07-26 16:02:00.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:00.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:00.398][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:00.399][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:00.400][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:00.401][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:00.402][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:00.403][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:00.403][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:00.404][ef$get] fields variable is a list.
biodb.INFO [2025-07-26 16:02:00.406][biodb::testThat]
biodb.INFO [2025-07-26 16:02:00.407][biodb::testThat] Running test function  test.annotateMzValues_real_values  (" annotateMzValues() works correctly with real values. ").
biodb.INFO [2025-07-26 16:02:00.408][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-07-26 16:02:00.409][biodb::testThat]
biodb.TRACE[2025-07-26 16:02:00.411][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-07-26 16:02:00.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-07-26 16:02:00.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:00.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:00.415][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-07-26 16:02:00.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-07-26 16:02:00.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:00.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:00.418][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-07-26 16:02:00.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-07-26 16:02:00.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:00.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:00.422][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:00.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:00.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:00.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:00.426][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:00.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:00.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:00.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:00.429][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:00.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:00.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:00.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:00.433][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:00.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:00.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:00.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:00.437][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:00.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:00.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:00.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:00.441][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:00.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:00.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:00.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:00.444][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:00.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:00.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:00.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:00.448][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:00.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:00.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:00.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:00.452][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:00.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:00.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:00.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:00.456][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:00.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:00.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:00.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:00.459][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:00.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:00.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:00.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:00.463][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:00.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:00.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:00.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:00.469][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:00.470][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:00.471][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:00.475][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:00.476][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:00.476][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:00.477][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-07-26 16:02:00.480][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-07-26 16:02:00.482][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-07-26 16:02:00.489][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/b616afd034ed5d04cbb32f1e92c778e7.content.
sched.DEBUG[2025-07-26 16:02:00.490][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-07-26 16:02:00.494][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:00.495][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:00.496][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:00.500][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:00.501][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:00.502][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:00.503][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-26 16:02:00.504][private$loadEntries] Creating entries from ids [1]: "3014".
biodb.DEBUG[2025-07-26 16:02:00.505][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-26 16:02:00.506][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-26 16:02:00.510][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/3014.xml.
biodb.DEBUG[2025-07-26 16:02:00.511][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-26 16:02:00.512][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-26 16:02:00.513][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-26 16:02:00.515][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:00.515][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:00.516][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:00.520][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:00.521][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:00.522][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:00.523][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:00.525][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:00.526][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:00.527][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:00.528][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:00.529][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:00.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:00.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:00.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:00.533][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:00.534][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:00.534][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:00.535][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:00.536][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:00.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:00.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:00.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:00.540][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:00.541][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:00.542][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:00.543][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:00.544][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:00.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:00.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:00.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:00.548][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:00.549][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:00.550][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:00.551][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:00.552][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:00.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:00.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:00.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:00.556][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:00.557][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:00.557][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:00.558][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:00.559][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:00.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:00.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:00.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:00.563][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:00.564][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:00.565][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:00.566][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:00.567][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:00.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:00.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:00.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:00.575][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-26 16:02:00.577][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:00.578][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:00.579][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:00.580][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-26 16:02:00.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:00.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:00.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:00.583][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:00.584][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:00.585][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:00.586][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:00.587][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:00.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:00.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:00.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:00.591][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:00.592][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:00.593][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:00.593][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:00.595][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:00.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:00.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:00.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:00.598][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-26 16:02:00.599][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:00.600][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:00.601][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:00.602][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-26 16:02:00.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:00.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:00.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:00.606][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:00.607][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:00.608][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:00.608][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:00.610][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:00.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:00.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:00.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:00.613][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:00.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:00.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:00.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:00.617][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:00.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:00.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:00.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:00.620][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:00.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:00.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:00.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:00.624][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:00.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:00.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:00.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:00.628][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:00.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:00.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:00.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:00.631][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:00.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:00.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:00.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:00.635][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:00.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:00.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:00.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:00.639][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:00.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:00.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:00.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:00.642][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:00.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:00.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:00.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:00.646][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:00.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:00.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:00.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:00.649][self$createEntryFromContent] Accession numbers: 3014.
biodb.TRACE[2025-07-26 16:02:00.650][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:00.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:00.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:00.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:00.654][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:00.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:00.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:00.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:00.658][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:00.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:00.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:00.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:00.661][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:00.662][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:00.663][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:00.667][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:00.668][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:00.669][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:00.669][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-26 16:02:00.670][private$loadEntries] Creating entries from ids [1]: "7567".
biodb.DEBUG[2025-07-26 16:02:00.671][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-26 16:02:00.673][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-26 16:02:00.677][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7567.xml.
biodb.DEBUG[2025-07-26 16:02:00.678][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-26 16:02:00.679][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-26 16:02:00.680][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-26 16:02:00.681][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:00.682][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:00.683][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:00.687][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:00.688][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:00.688][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:00.689][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:00.691][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:00.692][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:00.693][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:00.694][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:00.695][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:00.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:00.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:00.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:00.699][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:00.700][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:00.701][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:00.702][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:00.703][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:00.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:00.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:00.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:00.707][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:00.708][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:00.708][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:00.709][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:00.710][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:00.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:00.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:00.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:00.714][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:00.715][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:00.716][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:00.717][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:00.718][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:00.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:00.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:00.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:00.722][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:00.723][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:00.723][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:00.724][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:00.725][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:00.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:00.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:00.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:00.729][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:00.730][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:00.731][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:00.732][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:00.733][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:00.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:00.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:00.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:00.737][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-26 16:02:00.738][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:00.739][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:00.739][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:00.741][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-26 16:02:00.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:00.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:00.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:00.744][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:00.745][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:00.746][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:00.747][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:00.748][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:00.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:00.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:00.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:00.752][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:00.753][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:00.754][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:00.755][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:00.756][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:00.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:00.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:00.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:00.760][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-26 16:02:00.760][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:00.761][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:00.762][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:00.763][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-26 16:02:00.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:00.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:00.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:00.767][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:00.768][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:00.769][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:00.770][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:00.771][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:00.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:00.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:00.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:00.775][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:00.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:00.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:00.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:00.778][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:00.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:00.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:00.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:00.782][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:00.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:00.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:00.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:00.786][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:00.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:00.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:00.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:00.789][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:00.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:00.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:00.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:00.793][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:00.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:00.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:00.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:00.796][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:00.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:00.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:00.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:00.800][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:00.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:00.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:00.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:00.804][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:00.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:00.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:00.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:00.808][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:00.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:00.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:00.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:00.811][self$createEntryFromContent] Accession numbers: 7567.
biodb.TRACE[2025-07-26 16:02:00.812][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:00.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:00.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:00.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:00.816][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:00.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:00.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:00.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:00.820][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:00.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:00.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:00.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:00.824][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:00.824][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:00.825][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:00.834][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:00.835][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:00.836][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:00.836][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-26 16:02:00.837][private$loadEntries] Creating entries from ids [1]: "8021".
biodb.DEBUG[2025-07-26 16:02:00.838][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-26 16:02:00.840][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-26 16:02:00.844][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/8021.xml.
biodb.DEBUG[2025-07-26 16:02:00.845][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-26 16:02:00.847][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-26 16:02:00.848][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-26 16:02:00.849][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:00.850][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:00.851][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:00.855][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:00.855][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:00.856][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:00.857][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:00.859][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:00.860][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:00.861][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:00.862][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:00.863][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:00.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:00.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:00.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:00.867][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:00.868][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:00.868][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:00.869][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:00.870][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:00.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:00.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:00.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:00.874][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:00.875][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:00.876][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:00.877][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:00.878][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:00.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:00.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:00.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:00.881][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:00.882][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:00.883][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:00.884][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:00.885][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:00.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:00.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:00.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:00.889][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:00.890][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:00.891][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:00.892][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:00.893][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:00.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:00.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:00.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:00.896][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:00.897][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:00.898][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:00.899][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:00.900][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-26 16:02:00.901][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:00.902][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:00.903][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:00.904][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-26 16:02:00.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:00.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:00.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:00.907][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:00.908][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:00.909][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:00.910][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:00.911][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:00.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:00.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:00.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:00.915][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:00.916][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:00.917][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:00.918][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:00.919][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:00.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:00.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:00.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:00.923][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-26 16:02:00.923][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:00.924][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:00.925][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:00.926][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-26 16:02:00.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:00.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:00.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:00.930][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:00.931][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:00.932][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:00.933][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:00.934][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:00.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:00.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:00.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:00.937][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:00.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:00.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:00.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:00.941][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:00.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:00.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:00.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:00.945][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:00.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:00.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:00.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:00.948][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:00.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:00.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:00.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:00.952][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:00.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:00.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:00.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:00.956][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:00.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:00.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:00.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:00.959][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:00.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:00.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:00.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:00.963][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:00.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:00.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:00.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:00.967][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:00.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:00.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:00.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:00.970][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:00.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:00.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:00.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:00.974][self$createEntryFromContent] Accession numbers: 8021.
biodb.TRACE[2025-07-26 16:02:00.975][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:00.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:00.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:00.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:00.979][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:00.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:00.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:00.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:00.982][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:00.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:00.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:00.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:00.986][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:00.987][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:00.987][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:00.992][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:00.993][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:00.993][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:00.994][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-26 16:02:00.995][private$loadEntries] Creating entries from ids [1]: "30382".
biodb.DEBUG[2025-07-26 16:02:00.996][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-26 16:02:00.997][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-26 16:02:01.001][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/30382.xml.
biodb.DEBUG[2025-07-26 16:02:01.002][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-26 16:02:01.003][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-26 16:02:01.004][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-26 16:02:01.005][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:01.006][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:01.007][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:01.011][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:01.012][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:01.013][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:01.013][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:01.016][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:01.017][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:01.018][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:01.018][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:01.020][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:01.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:01.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:01.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:01.023][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:01.024][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:01.025][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:01.026][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:01.027][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:01.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:01.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:01.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:01.031][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:01.032][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:01.033][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:01.034][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:01.035][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:01.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:01.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:01.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:01.039][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:01.040][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:01.040][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:01.041][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:01.042][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:01.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:01.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:01.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:01.046][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:01.047][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:01.048][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:01.049][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:01.050][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:01.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:01.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:01.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:01.054][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:01.055][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:01.056][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:01.057][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:01.058][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-26 16:02:01.059][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:01.060][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:01.060][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:01.062][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-26 16:02:01.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:01.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:01.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:01.065][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:01.066][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:01.067][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:01.068][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:01.069][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:01.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:01.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:01.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:01.073][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:01.074][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:01.075][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:01.076][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:01.077][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:01.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:01.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:01.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:01.081][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-26 16:02:01.082][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:01.083][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:01.088][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:01.089][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-26 16:02:01.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:01.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:01.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:01.093][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:01.094][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:01.095][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:01.096][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:01.097][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:01.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:01.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:01.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:01.101][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:01.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:01.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:01.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:01.104][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:01.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:01.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:01.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:01.108][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:01.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:01.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:01.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:01.111][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:01.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:01.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:01.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:01.115][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:01.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:01.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:01.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:01.119][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:01.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:01.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:01.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:01.122][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:01.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:01.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:01.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:01.126][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:01.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:01.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:01.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:01.130][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:01.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:01.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:01.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:01.133][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:01.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:01.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:01.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:01.137][self$createEntryFromContent] Accession numbers: 30382.
biodb.TRACE[2025-07-26 16:02:01.138][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:01.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:01.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:01.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:01.141][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:01.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:01.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:01.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:01.145][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:01.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:01.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:01.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:01.149][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-07-26 16:02:01.150][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:01.151][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:01.152][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:01.156][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:01.157][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:01.158][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:01.159][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:01.160][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:01.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:01.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:01.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:01.163][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:01.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:01.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:01.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:01.167][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:01.168][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-07-26 16:02:01.169][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-26 16:02:01.170][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-26 16:02:01.170][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:01.171][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:01.172][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:01.173][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:01.174][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:01.175][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:01.176][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:01.177][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:01.178][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:01.178][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:01.179][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:01.180][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:01.181][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:01.182][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:01.183][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:01.184][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-26 16:02:01.185][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:01.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:01.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:01.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:01.188][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:01.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:01.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:01.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:01.192][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:01.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:01.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:01.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:01.196][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [3014].
biodb.DEBUG[2025-07-26 16:02:01.197][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:01.198][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:01.198][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:01.202][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:01.203][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:01.204][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:01.205][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:01.206][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:01.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:01.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:01.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:01.210][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:01.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:01.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:01.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:01.213][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:01.214][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-07-26 16:02:01.215][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-26 16:02:01.216][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-26 16:02:01.217][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:01.218][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:01.219][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:01.220][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:01.221][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:01.221][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:01.222][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:01.223][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:01.224][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:01.225][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:01.226][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:01.227][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:01.228][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:01.229][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:01.230][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:01.230][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-26 16:02:01.231][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:01.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:01.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:01.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:01.235][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:01.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:01.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:01.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:01.239][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:01.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:01.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:01.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:01.243][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [8021].
biodb.DEBUG[2025-07-26 16:02:01.244][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:01.245][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:01.245][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:01.249][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:01.250][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:01.251][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:01.252][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:01.253][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:01.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:01.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:01.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:01.257][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:01.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:01.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:01.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:01.260][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:01.261][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-07-26 16:02:01.262][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-26 16:02:01.263][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-26 16:02:01.264][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:01.265][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:01.266][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:01.267][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:01.267][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:01.268][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:01.269][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:01.270][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:01.271][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:01.272][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:01.273][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:01.274][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:01.275][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:01.276][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:01.277][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:01.277][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-26 16:02:01.278][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:01.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:01.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:01.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:01.282][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:01.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:01.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:01.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:01.286][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:01.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:01.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:01.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:01.290][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [30382].
biodb.DEBUG[2025-07-26 16:02:01.291][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-07-26 16:02:01.291][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-07-26 16:02:01.293][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:01.294][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:01.295][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:01.299][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:01.300][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:01.301][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:01.302][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-07-26 16:02:01.304][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.4*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-07-26 16:02:01.306][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-07-26 16:02:01.312][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/4da83335ec00090f05f0a5128074d1f6.content.
sched.DEBUG[2025-07-26 16:02:01.313][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-07-26 16:02:01.316][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:01.316][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:01.317][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:01.321][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:01.322][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:01.323][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:01.324][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-26 16:02:01.325][private$loadEntries] Creating entries from ids [1]: "9710".
biodb.DEBUG[2025-07-26 16:02:01.326][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-26 16:02:01.327][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-26 16:02:01.331][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/9710.xml.
biodb.DEBUG[2025-07-26 16:02:01.332][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-26 16:02:01.333][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-26 16:02:01.334][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-26 16:02:01.335][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:01.336][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:01.337][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:01.341][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:01.346][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:01.347][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:01.348][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:01.350][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:01.351][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:01.352][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:01.353][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:01.354][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:01.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:01.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:01.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:01.358][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:01.359][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:01.359][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:01.360][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:01.361][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:01.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:01.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:01.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:01.365][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:01.366][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:01.367][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:01.368][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:01.369][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:01.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:01.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:01.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:01.373][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:01.374][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:01.374][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:01.375][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:01.376][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:01.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:01.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:01.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:01.380][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:01.381][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:01.382][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:01.383][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:01.384][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:01.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:01.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:01.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:01.387][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:01.388][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:01.389][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:01.390][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:01.391][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-26 16:02:01.392][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:01.393][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:01.394][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:01.395][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-26 16:02:01.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:01.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:01.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:01.399][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:01.399][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:01.400][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:01.401][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:01.402][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:01.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:01.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:01.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:01.406][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:01.407][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:01.408][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:01.409][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:01.410][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:01.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:01.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:01.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:01.413][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-26 16:02:01.414][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:01.415][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:01.416][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:01.417][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-26 16:02:01.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:01.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:01.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:01.421][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:01.422][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:01.423][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:01.423][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:01.425][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:01.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:01.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:01.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:01.428][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:01.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:01.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:01.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:01.432][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:01.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:01.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:01.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:01.435][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:01.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:01.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:01.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:01.439][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:01.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:01.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:01.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:01.443][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:01.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:01.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:01.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:01.446][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:01.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:01.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:01.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:01.450][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:01.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:01.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:01.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:01.454][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:01.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:01.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:01.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:01.457][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:01.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:01.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:01.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:01.461][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:01.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:01.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:01.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:01.465][self$createEntryFromContent] Accession numbers: 9710.
biodb.TRACE[2025-07-26 16:02:01.466][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:01.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:01.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:01.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:01.469][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:01.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:01.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:01.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:01.473][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:01.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:01.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:01.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:01.477][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:01.477][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:01.478][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:01.482][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:01.483][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:01.484][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:01.485][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-26 16:02:01.486][private$loadEntries] Creating entries from ids [1]: "65530".
biodb.DEBUG[2025-07-26 16:02:01.487][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-26 16:02:01.488][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-26 16:02:01.493][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/65530.xml.
biodb.DEBUG[2025-07-26 16:02:01.494][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-26 16:02:01.495][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-26 16:02:01.496][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-26 16:02:01.498][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:01.498][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:01.499][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:01.503][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:01.504][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:01.505][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:01.506][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:01.508][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:01.509][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:01.510][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:01.510][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:01.512][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:01.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:01.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:01.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:01.515][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:01.516][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:01.517][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:01.518][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:01.519][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:01.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:01.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:01.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:01.523][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:01.524][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:01.525][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:01.526][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:01.527][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:01.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:01.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:01.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:01.531][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:01.531][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:01.532][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:01.533][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:01.534][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:01.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:01.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:01.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:01.538][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:01.539][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:01.540][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:01.541][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:01.542][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:01.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:01.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:01.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:01.546][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:01.547][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:01.547][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:01.548][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:01.549][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-26 16:02:01.550][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:01.551][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:01.552][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:01.553][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-26 16:02:01.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:01.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:01.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:01.557][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:01.558][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:01.559][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:01.560][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:01.561][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:01.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:01.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:01.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:01.565][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:01.566][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:01.566][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:01.567][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:01.569][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:01.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:01.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:01.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:01.572][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-26 16:02:01.573][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:01.574][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:01.575][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:01.576][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-26 16:02:01.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:01.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:01.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:01.580][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:01.581][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:01.582][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:01.583][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:01.584][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:01.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:01.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:01.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:01.587][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:01.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:01.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:01.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:01.591][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:01.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:01.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:01.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:01.595][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:01.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:01.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:01.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:01.603][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:01.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:01.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:01.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:01.607][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:01.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:01.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:01.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:01.610][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:01.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:01.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:01.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:01.614][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:01.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:01.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:01.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:01.618][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:01.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:01.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:01.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:01.621][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:01.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:01.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:01.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:01.625][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:01.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:01.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:01.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:01.629][self$createEntryFromContent] Accession numbers: 65530.
biodb.TRACE[2025-07-26 16:02:01.630][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:01.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:01.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:01.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:01.633][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:01.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:01.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:01.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:01.637][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:01.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:01.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:01.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:01.641][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:01.641][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:01.642][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:01.646][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:01.647][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:01.648][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:01.649][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-26 16:02:01.650][private$loadEntries] Creating entries from ids [1]: "72338".
biodb.DEBUG[2025-07-26 16:02:01.651][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-26 16:02:01.652][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-26 16:02:01.655][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/72338.xml.
biodb.DEBUG[2025-07-26 16:02:01.656][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-26 16:02:01.657][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-26 16:02:01.658][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-26 16:02:01.660][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:01.661][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:01.661][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:01.665][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:01.666][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:01.667][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:01.668][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:01.670][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:01.671][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:01.672][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:01.673][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:01.674][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:01.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:01.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:01.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:01.677][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:01.678][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:01.679][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:01.680][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:01.681][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:01.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:01.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:01.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:01.685][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:01.686][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:01.687][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:01.688][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:01.689][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:01.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:01.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:01.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:01.692][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:01.693][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:01.694][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:01.695][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:01.696][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:01.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:01.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:01.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:01.700][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:01.701][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:01.702][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:01.703][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:01.704][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:01.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:01.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:01.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:01.707][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:01.708][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:01.709][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:01.710][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:01.711][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-26 16:02:01.712][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:01.713][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:01.714][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:01.715][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-26 16:02:01.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:01.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:01.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:01.719][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:01.720][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:01.721][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:01.722][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:01.723][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:01.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:01.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:01.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:01.727][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:01.727][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:01.728][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:01.729][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:01.731][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:01.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:01.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:01.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:01.734][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-26 16:02:01.735][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:01.736][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:01.737][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:01.738][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-26 16:02:01.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:01.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:01.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:01.742][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:01.743][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:01.744][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:01.744][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:01.746][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:01.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:01.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:01.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:01.749][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:01.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:01.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:01.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:01.753][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:01.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:01.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:01.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:01.757][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:01.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:01.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:01.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:01.760][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:01.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:01.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:01.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:01.764][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:01.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:01.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:01.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:01.768][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:01.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:01.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:01.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:01.771][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:01.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:01.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:01.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:01.775][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:01.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:01.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:01.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:01.779][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:01.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:01.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:01.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:01.782][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:01.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:01.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:01.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:01.786][self$createEntryFromContent] Accession numbers: 72338.
biodb.TRACE[2025-07-26 16:02:01.787][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:01.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:01.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:01.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:01.791][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:01.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:01.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:01.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:01.794][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:01.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:01.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:01.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:01.798][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:01.799][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:01.800][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:01.804][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:01.805][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:01.806][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:01.807][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-26 16:02:01.808][private$loadEntries] Creating entries from ids [1]: "77926".
biodb.DEBUG[2025-07-26 16:02:01.809][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-26 16:02:01.810][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-26 16:02:01.814][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/77926.xml.
biodb.DEBUG[2025-07-26 16:02:01.815][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-26 16:02:01.816][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-26 16:02:01.817][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-26 16:02:01.819][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:01.820][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:01.821][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:01.825][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:01.825][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:01.826][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:01.827][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:01.829][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:01.830][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:01.831][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:01.832][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:01.833][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:01.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:01.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:01.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:01.837][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:01.838][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:01.839][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:01.840][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:01.841][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:01.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:01.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:01.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:01.845][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:01.846][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:01.847][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:01.848][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:01.849][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:01.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:01.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:01.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:01.852][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:01.858][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:01.859][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:01.860][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:01.861][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:01.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:01.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:01.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:01.865][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:01.866][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:01.867][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:01.867][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:01.869][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:01.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:01.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:01.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:01.872][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:01.873][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:01.874][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:01.875][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:01.876][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-26 16:02:01.877][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:01.878][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:01.879][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:01.880][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-26 16:02:01.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:01.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:01.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:01.884][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:01.884][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:01.885][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:01.886][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:01.887][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:01.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:01.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:01.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:01.891][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:01.892][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:01.893][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:01.894][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:01.895][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:01.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:01.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:01.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:01.899][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-26 16:02:01.900][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:01.900][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:01.901][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:01.902][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-26 16:02:01.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:01.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:01.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:01.906][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:01.907][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:01.908][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:01.909][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:01.910][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:01.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:01.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:01.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:01.913][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:01.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:01.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:01.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:01.917][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:01.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:01.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:01.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:01.921][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:01.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:01.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:01.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:01.924][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:01.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:01.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:01.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:01.928][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:01.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:01.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:01.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:01.932][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:01.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:01.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:01.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:01.935][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:01.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:01.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:01.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:01.939][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:01.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:01.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:01.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:01.942][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:01.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:01.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:01.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:01.946][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:01.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:01.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:01.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:01.950][self$createEntryFromContent] Accession numbers: 77926.
biodb.TRACE[2025-07-26 16:02:01.951][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:01.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:01.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:01.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:01.954][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:01.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:01.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:01.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:01.958][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:01.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:01.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:01.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:01.961][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:01.962][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:01.963][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:01.967][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:01.968][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:01.969][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:01.970][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-26 16:02:01.971][private$loadEntries] Creating entries from ids [1]: "82369".
biodb.DEBUG[2025-07-26 16:02:01.972][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-26 16:02:01.973][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-26 16:02:01.977][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/82369.xml.
biodb.DEBUG[2025-07-26 16:02:01.978][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-26 16:02:01.979][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-26 16:02:01.980][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-26 16:02:01.982][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:01.983][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:01.984][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:01.987][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:01.988][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:01.989][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:01.990][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:01.992][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:01.993][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:01.994][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:01.995][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:01.996][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:01.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:01.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:01.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:02.000][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:02.001][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:02.001][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:02.002][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:02.003][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:02.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:02.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:02.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:02.007][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:02.008][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:02.009][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:02.010][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:02.011][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:02.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:02.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:02.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:02.015][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:02.016][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:02.017][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:02.017][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:02.019][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:02.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:02.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:02.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:02.022][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:02.023][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:02.024][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:02.025][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:02.026][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:02.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:02.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:02.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:02.030][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:02.031][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:02.032][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:02.032][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:02.034][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:02.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:02.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:02.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:02.037][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-26 16:02:02.038][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:02.039][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:02.040][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:02.041][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-26 16:02:02.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:02.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:02.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:02.045][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:02.046][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:02.047][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:02.048][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:02.049][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:02.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:02.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:02.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:02.052][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:02.053][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:02.054][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:02.055][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:02.056][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:02.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:02.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:02.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:02.060][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-26 16:02:02.061][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:02.062][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:02.063][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:02.064][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-26 16:02:02.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:02.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:02.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:02.068][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:02.069][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:02.069][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:02.070][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:02.071][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:02.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:02.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:02.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:02.075][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:02.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:02.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:02.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:02.079][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:02.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:02.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:02.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:02.082][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:02.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:02.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:02.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:02.086][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:02.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:02.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:02.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:02.090][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:02.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:02.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:02.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:02.093][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:02.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:02.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:02.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:02.097][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:02.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:02.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:02.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:02.101][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:02.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:02.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:02.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:02.105][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:02.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:02.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:02.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:02.113][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:02.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:02.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:02.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:02.117][self$createEntryFromContent] Accession numbers: 82369.
biodb.TRACE[2025-07-26 16:02:02.118][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:02.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:02.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:02.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:02.121][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:02.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:02.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:02.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:02.125][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:02.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:02.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:02.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:02.129][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:02.129][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:02.130][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:02.134][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:02.135][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:02.136][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:02.137][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-26 16:02:02.138][private$loadEntries] Creating entries from ids [1]: "90204".
biodb.DEBUG[2025-07-26 16:02:02.139][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-26 16:02:02.140][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-26 16:02:02.144][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/90204.xml.
biodb.DEBUG[2025-07-26 16:02:02.145][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-26 16:02:02.146][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-26 16:02:02.147][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-26 16:02:02.149][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:02.150][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:02.151][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:02.155][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:02.155][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:02.156][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:02.157][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:02.159][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:02.160][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:02.161][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:02.162][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:02.163][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:02.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:02.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:02.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:02.167][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:02.168][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:02.169][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:02.169][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:02.171][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:02.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:02.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:02.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:02.174][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:02.175][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:02.176][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:02.177][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:02.178][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:02.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:02.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:02.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:02.182][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:02.183][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:02.183][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:02.184][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:02.185][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:02.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:02.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:02.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:02.189][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:02.190][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:02.191][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:02.192][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:02.193][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:02.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:02.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:02.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:02.196][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:02.197][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:02.198][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:02.199][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:02.200][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-26 16:02:02.201][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:02.202][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:02.203][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:02.204][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-26 16:02:02.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:02.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:02.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:02.208][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:02.209][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:02.210][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:02.210][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:02.211][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:02.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:02.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:02.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:02.215][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:02.216][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:02.217][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:02.218][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:02.219][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:02.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:02.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:02.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:02.223][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-26 16:02:02.224][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:02.224][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:02.225][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:02.226][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-26 16:02:02.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:02.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:02.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:02.230][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:02.231][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:02.232][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:02.233][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:02.234][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:02.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:02.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:02.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:02.238][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:02.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:02.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:02.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:02.241][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:02.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:02.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:02.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:02.245][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:02.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:02.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:02.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:02.249][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:02.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:02.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:02.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:02.252][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:02.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:02.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:02.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:02.256][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:02.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:02.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:02.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:02.260][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:02.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:02.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:02.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:02.263][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:02.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:02.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:02.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:02.267][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:02.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:02.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:02.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:02.271][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:02.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:02.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:02.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:02.274][self$createEntryFromContent] Accession numbers: 90204.
biodb.TRACE[2025-07-26 16:02:02.275][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:02.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:02.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:02.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:02.279][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:02.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:02.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:02.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:02.283][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:02.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:02.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:02.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:02.286][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:02.287][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:02.288][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:02.292][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:02.293][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:02.294][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:02.295][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-26 16:02:02.296][private$loadEntries] Creating entries from ids [1]: "132793".
biodb.DEBUG[2025-07-26 16:02:02.297][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-26 16:02:02.298][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-26 16:02:02.303][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/132793.xml.
biodb.DEBUG[2025-07-26 16:02:02.304][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-26 16:02:02.305][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-26 16:02:02.306][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-26 16:02:02.307][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:02.308][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:02.309][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:02.313][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:02.314][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:02.315][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:02.316][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:02.318][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:02.319][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:02.320][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:02.321][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:02.322][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:02.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:02.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:02.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:02.325][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:02.326][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:02.327][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:02.328][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:02.329][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:02.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:02.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:02.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:02.333][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:02.334][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:02.335][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:02.336][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:02.337][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:02.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:02.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:02.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:02.341][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:02.342][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:02.343][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:02.343][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:02.345][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:02.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:02.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:02.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:02.348][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:02.349][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:02.350][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:02.351][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:02.352][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:02.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:02.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:02.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:02.356][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:02.357][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:02.358][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:02.359][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:02.360][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:02.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:02.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:02.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:02.364][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-26 16:02:02.365][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:02.370][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:02.371][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:02.372][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-26 16:02:02.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:02.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:02.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:02.376][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:02.377][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:02.378][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:02.379][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:02.380][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:02.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:02.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:02.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:02.384][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:02.384][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:02.385][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:02.386][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:02.387][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:02.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:02.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:02.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:02.391][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-26 16:02:02.392][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:02.393][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:02.394][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:02.395][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-26 16:02:02.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:02.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:02.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:02.399][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:02.400][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:02.400][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:02.401][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:02.402][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:02.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:02.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:02.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:02.406][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:02.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:02.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:02.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:02.410][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:02.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:02.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:02.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:02.413][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:02.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:02.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:02.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:02.417][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:02.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:02.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:02.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:02.421][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:02.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:02.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:02.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:02.424][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:02.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:02.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:02.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:02.428][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:02.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:02.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:02.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:02.431][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:02.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:02.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:02.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:02.435][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:02.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:02.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:02.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:02.439][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:02.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:02.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:02.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:02.442][self$createEntryFromContent] Accession numbers: 132793.
biodb.TRACE[2025-07-26 16:02:02.443][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:02.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:02.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:02.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:02.447][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:02.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:02.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:02.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:02.451][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:02.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:02.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:02.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:02.454][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-07-26 16:02:02.456][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:02.457][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:02.457][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:02.462][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:02.462][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:02.463][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:02.464][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:02.465][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:02.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:02.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:02.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:02.469][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:02.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:02.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:02.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:02.472][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:02.473][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-07-26 16:02:02.474][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-26 16:02:02.475][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-26 16:02:02.476][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:02.477][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:02.478][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:02.478][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:02.479][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:02.480][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:02.481][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:02.482][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:02.483][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:02.484][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:02.485][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:02.486][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:02.487][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:02.488][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:02.488][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:02.489][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-26 16:02:02.490][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:02.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:02.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:02.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:02.494][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:02.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:02.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:02.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:02.498][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:02.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:02.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:02.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:02.502][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [65530].
biodb.DEBUG[2025-07-26 16:02:02.503][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:02.503][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:02.504][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:02.508][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:02.509][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:02.510][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:02.511][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:02.512][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:02.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:02.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:02.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:02.515][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:02.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:02.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:02.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:02.519][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:02.520][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-07-26 16:02:02.521][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-26 16:02:02.522][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-26 16:02:02.523][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:02.523][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:02.524][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:02.525][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:02.526][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:02.527][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:02.528][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:02.529][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:02.530][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:02.531][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:02.532][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:02.533][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:02.534][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:02.534][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:02.535][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:02.536][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-26 16:02:02.537][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:02.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:02.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:02.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:02.541][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:02.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:02.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:02.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:02.544][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:02.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:02.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:02.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:02.548][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [90204].
biodb.DEBUG[2025-07-26 16:02:02.549][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:02.550][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:02.551][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:02.555][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:02.556][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:02.557][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:02.558][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:02.559][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:02.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:02.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:02.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:02.562][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:02.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:02.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:02.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:02.566][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:02.567][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-07-26 16:02:02.568][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-26 16:02:02.569][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-26 16:02:02.569][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:02.570][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:02.571][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:02.572][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:02.573][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:02.574][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:02.575][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:02.576][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:02.577][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:02.578][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:02.578][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:02.579][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:02.580][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:02.581][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:02.582][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:02.583][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-26 16:02:02.584][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:02.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:02.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:02.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:02.588][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:02.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:02.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:02.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:02.591][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:02.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:02.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:02.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:02.595][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [132793].
biodb.DEBUG[2025-07-26 16:02:02.596][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-07-26 16:02:02.597][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-07-26 16:02:02.599][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:02.600][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:02.600][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:02.604][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:02.605][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:02.606][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:02.607][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-07-26 16:02:02.609][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.1*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-07-26 16:02:02.612][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-07-26 16:02:02.614][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/d4eeadefe2fd6c7a45a5c47263c29105.content.
sched.DEBUG[2025-07-26 16:02:02.615][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-07-26 16:02:02.621][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:02.622][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:02.623][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:02.627][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:02.627][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:02.628][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:02.629][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-26 16:02:02.630][private$loadEntries] Creating entries from ids [1]: "131378".
biodb.DEBUG[2025-07-26 16:02:02.631][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-26 16:02:02.632][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-26 16:02:02.636][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/131378.xml.
biodb.DEBUG[2025-07-26 16:02:02.637][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-26 16:02:02.638][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-26 16:02:02.639][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-26 16:02:02.640][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:02.641][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:02.642][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:02.646][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:02.647][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:02.647][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:02.654][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:02.659][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:02.660][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:02.661][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:02.662][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:02.663][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:02.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:02.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:02.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:02.668][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:02.669][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:02.670][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:02.671][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:02.672][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:02.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:02.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:02.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:02.676][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:02.677][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:02.678][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:02.679][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:02.680][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:02.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:02.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:02.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:02.685][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:02.686][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:02.687][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:02.688][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:02.689][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:02.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:02.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:02.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:02.693][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:02.694][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:02.695][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:02.696][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:02.697][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:02.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:02.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:02.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:02.701][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:02.702][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:02.703][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:02.704][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:02.706][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-26 16:02:02.707][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:02.708][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:02.709][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:02.710][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-26 16:02:02.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:02.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:02.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:02.714][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:02.715][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:02.716][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:02.717][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:02.719][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:02.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:02.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:02.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:02.723][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:02.724][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:02.725][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:02.726][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:02.727][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:02.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:02.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:02.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:02.732][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-26 16:02:02.733][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:02.734][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:02.735][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:02.736][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-26 16:02:02.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:02.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:02.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:02.740][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:02.741][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:02.742][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:02.743][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:02.744][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:02.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:02.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:02.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:02.749][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:02.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:02.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:02.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:02.753][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:02.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:02.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:02.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:02.757][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:02.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:02.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:02.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:02.761][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:02.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:02.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:02.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:02.766][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:02.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:02.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:02.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:02.770][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:02.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:02.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:02.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:02.774][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:02.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:02.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:02.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:02.778][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:02.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:02.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:02.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:02.782][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:02.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:02.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:02.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:02.786][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:02.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:02.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:02.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:02.791][self$createEntryFromContent] Accession numbers: 131378.
biodb.TRACE[2025-07-26 16:02:02.792][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:02.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:02.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:02.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:02.796][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:02.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:02.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:02.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:02.800][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:02.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:02.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:02.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:02.805][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:02.806][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:02.807][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:02.812][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:02.813][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:02.814][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:02.815][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-26 16:02:02.816][private$loadEntries] Creating entries from ids [1]: "214202".
biodb.DEBUG[2025-07-26 16:02:02.817][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-26 16:02:02.819][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-26 16:02:02.822][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/214202.xml.
biodb.DEBUG[2025-07-26 16:02:02.823][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-26 16:02:02.825][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-26 16:02:02.826][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-26 16:02:02.827][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:02.828][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:02.829][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:02.834][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:02.835][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:02.836][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:02.837][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:02.839][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:02.840][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:02.841][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:02.842][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:02.843][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:02.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:02.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:02.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:02.847][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:02.848][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:02.849][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:02.850][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:02.851][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:02.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:02.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:02.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:02.856][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:02.857][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:02.858][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:02.859][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:02.860][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:02.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:02.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:02.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:02.864][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:02.865][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:02.866][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:02.867][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:02.868][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:02.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:02.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:02.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:02.872][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:02.873][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:02.874][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:02.875][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:02.877][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:02.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:02.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:02.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:02.881][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:02.882][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:02.883][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:02.884][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:02.885][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-26 16:02:02.886][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:02.887][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:02.888][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:02.889][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-26 16:02:02.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:02.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:02.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:02.893][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:02.894][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:02.895][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:02.896][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:02.897][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:02.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:02.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:02.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:02.901][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:02.902][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:02.903][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:02.904][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:02.906][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:02.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:02.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:02.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:02.937][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-26 16:02:02.938][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:02.939][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:02.940][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:02.941][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-26 16:02:02.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:02.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:02.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:02.945][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:02.946][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:02.947][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:02.947][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:02.949][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:02.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:02.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:02.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:02.952][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:02.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:02.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:02.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:02.956][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:02.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:02.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:02.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:02.960][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:02.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:02.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:02.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:02.963][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:02.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:02.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:02.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:02.967][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:02.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:02.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:02.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:02.971][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:02.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:02.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:02.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:02.974][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:02.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:02.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:02.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:02.978][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:02.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:02.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:02.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:02.982][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:02.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:02.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:02.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:02.985][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:02.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:02.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:02.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:02.989][self$createEntryFromContent] Accession numbers: 214202.
biodb.TRACE[2025-07-26 16:02:02.990][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:02.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:02.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:02.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:02.994][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:02.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:02.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:02.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:02.997][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:02.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:02.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:03.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
sched.DEBUG[2025-07-26 16:02:03.001][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.2*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-07-26 16:02:03.004][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-07-26 16:02:03.006][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/8a1fe476d9f07138803c04b6da6259b3.content.
sched.DEBUG[2025-07-26 16:02:03.007][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-07-26 16:02:03.009][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:03.010][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:03.011][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:03.015][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:03.016][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:03.017][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:03.018][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-26 16:02:03.019][private$loadEntries] Creating entries from ids [1]: "51836".
biodb.DEBUG[2025-07-26 16:02:03.019][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-26 16:02:03.021][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-26 16:02:03.024][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/51836.xml.
biodb.DEBUG[2025-07-26 16:02:03.025][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-26 16:02:03.026][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-26 16:02:03.027][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-26 16:02:03.029][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:03.030][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:03.030][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:03.034][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:03.035][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:03.036][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:03.037][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:03.039][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:03.040][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:03.041][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:03.042][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:03.043][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:03.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:03.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:03.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:03.046][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:03.047][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:03.048][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:03.049][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:03.050][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:03.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:03.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:03.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:03.054][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:03.055][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:03.056][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:03.057][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:03.058][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:03.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:03.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:03.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:03.062][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:03.063][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:03.064][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:03.064][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:03.066][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:03.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:03.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:03.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:03.069][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:03.070][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:03.071][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:03.072][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:03.073][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:03.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:03.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:03.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:03.077][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:03.078][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:03.079][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:03.080][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:03.081][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:03.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:03.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:03.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:03.085][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-26 16:02:03.086][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:03.087][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:03.087][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:03.089][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-26 16:02:03.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:03.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:03.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:03.092][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:03.093][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:03.094][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:03.095][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:03.096][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:03.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:03.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:03.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:03.100][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:03.101][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:03.102][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:03.103][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:03.104][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:03.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:03.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:03.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:03.108][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-26 16:02:03.109][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:03.110][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:03.111][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:03.112][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-26 16:02:03.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:03.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:03.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:03.116][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:03.117][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:03.117][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:03.118][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:03.119][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:03.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:03.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:03.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:03.123][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:03.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:03.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:03.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:03.127][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:03.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:03.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:03.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:03.131][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:03.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:03.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:03.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:03.134][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:03.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:03.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:03.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:03.138][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:03.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:03.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:03.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:03.142][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:03.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:03.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:03.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:03.145][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:03.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:03.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:03.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:03.149][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:03.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:03.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:03.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:03.153][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:03.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:03.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:03.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:03.157][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:03.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:03.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:03.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:03.160][self$createEntryFromContent] Accession numbers: 51836.
biodb.TRACE[2025-07-26 16:02:03.161][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:03.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:03.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:03.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:03.165][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:03.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:03.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:03.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:03.169][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:03.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:03.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:03.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:03.173][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:03.173][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:03.174][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:03.178][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:03.179][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:03.180][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:03.181][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-26 16:02:03.182][private$loadEntries] Creating entries from ids [1]: "51837".
biodb.DEBUG[2025-07-26 16:02:03.183][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-26 16:02:03.184][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-26 16:02:03.188][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/51837.xml.
biodb.DEBUG[2025-07-26 16:02:03.189][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-26 16:02:03.190][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-26 16:02:03.195][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-26 16:02:03.197][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:03.198][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:03.199][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:03.203][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:03.204][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:03.205][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:03.206][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:03.208][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:03.209][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:03.210][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:03.211][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:03.212][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:03.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:03.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:03.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:03.216][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:03.217][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:03.218][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:03.219][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:03.220][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:03.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:03.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:03.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:03.224][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:03.225][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:03.226][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:03.227][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:03.228][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:03.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:03.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:03.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:03.232][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:03.233][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:03.234][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:03.234][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:03.235][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:03.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:03.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:03.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:03.239][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:03.240][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:03.241][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:03.242][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:03.243][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:03.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:03.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:03.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:03.247][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:03.248][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:03.248][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:03.249][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:03.250][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:03.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:03.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:03.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:03.254][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-26 16:02:03.255][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:03.256][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:03.257][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:03.258][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-26 16:02:03.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:03.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:03.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:03.261][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:03.262][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:03.263][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:03.264][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:03.265][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:03.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:03.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:03.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:03.269][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:03.270][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:03.271][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:03.272][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:03.273][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:03.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:03.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:03.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:03.276][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-26 16:02:03.277][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:03.278][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:03.279][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:03.280][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-26 16:02:03.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:03.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:03.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:03.284][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:03.285][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:03.286][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:03.287][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:03.288][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:03.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:03.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:03.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:03.292][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:03.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:03.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:03.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:03.295][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:03.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:03.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:03.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:03.299][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:03.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:03.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:03.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:03.303][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:03.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:03.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:03.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:03.306][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:03.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:03.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:03.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:03.310][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:03.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:03.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:03.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:03.314][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:03.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:03.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:03.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:03.317][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:03.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:03.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:03.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:03.321][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:03.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:03.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:03.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:03.325][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:03.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:03.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:03.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:03.328][self$createEntryFromContent] Accession numbers: 51837.
biodb.TRACE[2025-07-26 16:02:03.329][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:03.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:03.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:03.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:03.333][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:03.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:03.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:03.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:03.337][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:03.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:03.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:03.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:03.340][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:03.341][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:03.342][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:03.346][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:03.347][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:03.348][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:03.349][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-26 16:02:03.350][private$loadEntries] Creating entries from ids [1]: "132205".
biodb.DEBUG[2025-07-26 16:02:03.351][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-26 16:02:03.352][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-26 16:02:03.356][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/132205.xml.
biodb.DEBUG[2025-07-26 16:02:03.357][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-26 16:02:03.358][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-26 16:02:03.359][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-26 16:02:03.360][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:03.361][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:03.362][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:03.366][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:03.367][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:03.368][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:03.369][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:03.371][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:03.372][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:03.373][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:03.374][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:03.375][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:03.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:03.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:03.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:03.379][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:03.380][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:03.381][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:03.382][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:03.383][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:03.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:03.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:03.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:03.387][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:03.388][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:03.388][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:03.389][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:03.390][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:03.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:03.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:03.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:03.394][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:03.395][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:03.396][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:03.397][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:03.398][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:03.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:03.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:03.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:03.402][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:03.403][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:03.404][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:03.405][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:03.406][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:03.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:03.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:03.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:03.410][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:03.411][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:03.411][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:03.412][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:03.413][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-26 16:02:03.414][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:03.415][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:03.416][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:03.417][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-26 16:02:03.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:03.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:03.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:03.421][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:03.422][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:03.423][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:03.424][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:03.425][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:03.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:03.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:03.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:03.429][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:03.430][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:03.430][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:03.431][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:03.433][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:03.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:03.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:03.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:03.436][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-26 16:02:03.437][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:03.438][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:03.439][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:03.440][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-26 16:02:03.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:03.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:03.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:03.444][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:03.445][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:03.446][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:03.446][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:03.448][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:03.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:03.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:03.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:03.456][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:03.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:03.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:03.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:03.460][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:03.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:03.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:03.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:03.463][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:03.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:03.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:03.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:03.467][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:03.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:03.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:03.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:03.471][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:03.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:03.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:03.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:03.474][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:03.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:03.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:03.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:03.478][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:03.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:03.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:03.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:03.482][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:03.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:03.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:03.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:03.485][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:03.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:03.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:03.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:03.489][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:03.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:03.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:03.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:03.492][self$createEntryFromContent] Accession numbers: 132205.
biodb.TRACE[2025-07-26 16:02:03.493][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:03.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:03.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:03.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:03.497][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:03.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:03.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:03.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:03.501][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:03.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:03.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:03.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:03.504][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-07-26 16:02:03.506][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:03.507][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:03.508][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:03.512][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:03.513][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:03.513][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:03.514][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:03.515][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:03.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:03.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:03.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:03.519][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:03.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:03.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:03.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:03.523][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:03.523][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-07-26 16:02:03.524][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-26 16:02:03.525][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-26 16:02:03.526][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:03.527][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:03.528][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:03.529][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:03.530][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:03.531][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:03.532][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:03.532][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:03.533][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:03.534][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:03.535][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:03.536][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:03.537][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:03.538][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:03.539][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:03.540][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-26 16:02:03.541][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:03.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:03.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:03.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:03.544][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:03.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:03.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:03.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:03.548][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:03.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:03.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:03.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:03.552][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [51836].
biodb.DEBUG[2025-07-26 16:02:03.553][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:03.554][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:03.554][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:03.558][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:03.559][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:03.560][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:03.561][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:03.562][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:03.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:03.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:03.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:03.566][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:03.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:03.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:03.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:03.569][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:03.570][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-07-26 16:02:03.571][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-26 16:02:03.572][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-26 16:02:03.573][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:03.574][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:03.575][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:03.576][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:03.576][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:03.577][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:03.578][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:03.579][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:03.580][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:03.581][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:03.582][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:03.583][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:03.584][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:03.585][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:03.586][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:03.586][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-26 16:02:03.587][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:03.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:03.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:03.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:03.591][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:03.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:03.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:03.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:03.595][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:03.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:03.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:03.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:03.599][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [51837].
biodb.DEBUG[2025-07-26 16:02:03.600][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:03.600][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:03.601][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:03.605][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:03.606][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:03.607][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:03.608][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:03.609][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:03.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:03.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:03.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:03.613][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:03.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:03.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:03.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:03.616][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:03.617][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-07-26 16:02:03.618][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-26 16:02:03.619][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-26 16:02:03.620][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:03.621][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:03.622][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:03.623][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:03.623][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:03.624][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:03.625][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:03.626][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:03.627][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:03.628][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:03.629][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:03.630][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:03.631][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:03.632][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:03.633][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:03.633][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-26 16:02:03.634][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:03.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:03.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:03.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:03.638][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:03.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:03.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:03.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:03.642][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:03.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:03.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:03.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:03.646][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [132205].
biodb.DEBUG[2025-07-26 16:02:03.647][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-07-26 16:02:03.648][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-07-26 16:02:03.665][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:03.666][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:03.667][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:03.670][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:03.671][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:03.672][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:03.673][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-07-26 16:02:03.675][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-07-26 16:02:03.678][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-07-26 16:02:03.679][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/8fc54eee7e982ce554bee8000d8203f7.content.
sched.DEBUG[2025-07-26 16:02:03.680][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-07-26 16:02:03.682][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:03.683][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:03.684][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:03.688][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:03.689][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:03.689][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:03.690][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:03.691][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:03.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:03.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:03.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:03.695][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:03.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:03.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:03.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:03.699][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:03.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:03.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:03.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
sched.DEBUG[2025-07-26 16:02:03.707][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-07-26 16:02:03.710][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-07-26 16:02:03.712][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/6def615835d7c1dfccd5a5f135bd2f9d.content.
sched.DEBUG[2025-07-26 16:02:03.713][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-07-26 16:02:03.715][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:03.716][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:03.716][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:03.720][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:03.721][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:03.722][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:03.723][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:03.724][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:03.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:03.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:03.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:03.728][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:03.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:03.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:03.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:03.731][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:03.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:03.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:03.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:03.735][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:03.736][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:03.736][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:03.740][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:03.741][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:03.742][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:03.743][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:03.744][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:03.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:03.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:03.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:03.748][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:03.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:03.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:03.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:03.751][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:03.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:03.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:03.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:03.755][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-07-26 16:02:03.757][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:03.758][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:03.758][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:03.762][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:03.763][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:03.764][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:03.765][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:03.766][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:03.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:03.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:03.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:03.770][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:03.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:03.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:03.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:03.773][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:03.774][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-07-26 16:02:03.775][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-26 16:02:03.776][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-26 16:02:03.777][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:03.778][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:03.779][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:03.779][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:03.780][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:03.781][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:03.782][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:03.783][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:03.784][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:03.785][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:03.786][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:03.787][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:03.788][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:03.788][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:03.789][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:03.790][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-26 16:02:03.791][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:03.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:03.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:03.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:03.795][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:03.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:03.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:03.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:03.798][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:03.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:03.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:03.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:03.802][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [192288].
biodb.DEBUG[2025-07-26 16:02:03.803][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:03.804][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:03.805][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:03.809][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:03.810][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:03.811][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:03.812][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:03.813][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:03.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:03.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:03.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:03.816][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:03.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:03.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:03.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:03.820][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:03.821][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-07-26 16:02:03.822][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-26 16:02:03.823][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-26 16:02:03.823][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:03.824][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:03.825][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:03.826][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:03.827][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:03.828][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:03.829][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:03.830][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:03.831][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:03.832][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:03.833][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:03.833][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:03.834][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:03.835][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:03.836][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:03.837][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-26 16:02:03.838][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:03.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:03.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:03.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:03.842][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:03.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:03.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:03.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:03.845][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:03.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:03.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:03.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:03.849][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2025-07-26 16:02:03.850][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:03.851][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:03.852][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:03.856][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:03.857][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:03.858][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:03.859][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:03.860][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:03.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:03.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:03.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:03.863][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:03.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:03.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:03.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:03.867][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:03.868][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-07-26 16:02:03.869][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-26 16:02:03.870][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-26 16:02:03.870][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:03.871][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:03.872][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:03.873][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:03.874][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:03.875][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:03.876][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:03.877][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:03.878][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:03.879][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:03.880][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:03.880][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:03.881][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:03.882][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:03.883][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:03.884][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-26 16:02:03.885][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:03.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:03.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:03.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:03.889][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:03.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:03.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:03.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:03.892][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:03.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:03.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:03.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:03.896][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [209892].
biodb.DEBUG[2025-07-26 16:02:03.897][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-07-26 16:02:03.898][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-07-26 16:02:03.900][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:03.901][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:03.902][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:03.906][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:03.907][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:03.907][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:03.908][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-07-26 16:02:03.911][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-07-26 16:02:03.913][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-07-26 16:02:03.915][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/013adb879cee6d4257067df9ba0a8c7b.content.
sched.DEBUG[2025-07-26 16:02:03.916][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-07-26 16:02:03.918][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:03.919][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:03.920][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:03.923][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:03.924][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:03.925][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:03.926][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:03.927][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:03.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:03.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:03.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:03.931][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:03.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:03.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:03.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:03.934][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:03.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:03.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:03.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:03.938][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:03.939][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:03.940][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:03.944][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:03.944][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:03.945][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:03.946][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:03.947][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:03.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:03.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:03.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:03.951][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:03.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:03.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:03.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:03.954][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:03.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:03.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:03.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
sched.DEBUG[2025-07-26 16:02:03.963][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.63*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-07-26 16:02:03.966][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-07-26 16:02:03.969][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/d37a10a1f6afae785eb4d1943c254641.content.
sched.DEBUG[2025-07-26 16:02:03.969][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-07-26 16:02:03.972][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:03.973][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:03.973][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:03.977][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:03.978][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:03.979][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:03.980][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:03.981][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:03.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:03.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:03.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:03.984][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:03.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:03.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:03.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:03.988][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:03.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:03.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:03.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:03.992][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:03.992][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:03.993][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:03.997][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:03.998][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:03.999][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:04.000][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:04.001][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:04.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:04.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:04.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:04.004][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:04.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:04.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:04.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:04.008][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:04.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:04.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:04.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:04.011][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:04.012][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:04.013][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:04.017][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:04.018][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:04.018][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:04.019][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:04.020][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:04.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:04.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:04.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:04.024][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:04.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:04.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:04.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:04.027][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:04.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:04.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:04.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:04.031][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-07-26 16:02:04.033][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:04.033][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:04.034][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:04.038][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:04.039][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:04.040][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:04.040][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:04.042][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:04.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:04.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:04.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:04.045][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:04.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:04.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:04.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:04.049][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:04.050][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-07-26 16:02:04.050][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-26 16:02:04.051][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-26 16:02:04.052][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:04.053][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:04.054][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:04.055][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:04.056][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:04.057][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:04.058][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:04.059][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:04.059][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:04.060][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:04.061][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:04.062][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:04.063][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:04.064][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:04.065][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:04.066][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-26 16:02:04.067][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:04.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:04.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:04.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:04.070][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:04.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:04.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:04.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:04.074][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:04.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:04.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:04.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:04.078][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2025-07-26 16:02:04.079][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:04.080][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:04.081][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:04.085][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:04.086][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:04.087][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:04.087][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:04.089][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:04.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:04.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:04.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:04.092][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:04.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:04.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:04.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:04.096][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:04.097][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-07-26 16:02:04.098][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-26 16:02:04.098][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-26 16:02:04.099][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:04.100][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:04.101][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:04.102][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:04.103][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:04.104][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:04.105][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:04.106][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:04.107][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:04.107][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:04.108][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:04.109][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:04.110][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:04.111][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:04.112][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:04.113][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-26 16:02:04.114][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:04.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:04.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:04.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:04.118][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:04.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:04.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:04.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:04.121][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:04.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:04.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:04.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:04.125][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [16587].
biodb.DEBUG[2025-07-26 16:02:04.126][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:04.127][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:04.128][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:04.132][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:04.133][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:04.133][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:04.134][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:04.135][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:04.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:04.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:04.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:04.139][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:04.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:04.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:04.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:04.143][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:04.144][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-07-26 16:02:04.144][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-26 16:02:04.145][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-26 16:02:04.146][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:04.147][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:04.148][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:04.149][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:04.150][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:04.151][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:04.152][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:04.153][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:04.153][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:04.154][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:04.155][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:04.156][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:04.157][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:04.158][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:04.159][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:04.160][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-26 16:02:04.161][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:04.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:04.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:04.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:04.164][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:04.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:04.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:04.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:04.168][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:04.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:04.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:04.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:04.172][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [19804].
biodb.DEBUG[2025-07-26 16:02:04.173][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-07-26 16:02:04.174][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-07-26 16:02:04.176][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:04.177][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:04.177][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:04.181][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:04.182][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:04.183][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:04.184][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-07-26 16:02:04.186][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-07-26 16:02:04.189][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-07-26 16:02:04.191][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/618204bc3e9a685033db1d9be9d78d44.content.
sched.DEBUG[2025-07-26 16:02:04.192][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-07-26 16:02:04.194][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:04.195][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:04.196][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:04.200][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:04.201][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:04.202][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:04.203][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:04.204][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:04.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:04.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:04.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:04.207][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:04.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:04.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:04.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:04.216][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:04.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:04.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:04.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:04.220][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:04.221][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:04.222][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:04.226][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:04.227][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:04.228][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:04.228][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:04.229][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:04.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:04.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:04.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:04.233][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:04.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:04.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:04.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:04.237][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:04.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:04.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:04.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:04.240][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:04.241][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:04.242][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:04.246][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:04.247][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:04.248][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:04.248][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:04.250][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:04.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:04.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:04.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:04.253][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:04.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:04.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:04.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:04.257][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:04.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:04.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:04.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:04.260][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:04.261][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:04.262][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:04.266][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:04.267][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:04.268][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:04.269][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:04.270][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:04.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:04.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:04.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:04.273][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:04.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:04.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:04.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:04.277][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:04.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:04.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:04.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:04.281][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:04.282][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:04.282][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:04.286][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:04.287][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:04.288][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:04.289][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:04.290][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:04.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:04.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:04.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:04.294][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:04.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:04.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:04.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:04.297][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:04.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:04.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:04.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:04.301][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:04.302][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:04.303][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:04.307][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:04.307][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:04.308][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:04.309][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:04.310][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:04.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:04.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:04.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:04.314][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:04.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:04.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:04.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:04.318][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:04.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:04.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:04.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:04.321][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:04.322][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:04.323][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:04.327][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:04.328][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:04.329][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:04.330][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:04.331][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:04.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:04.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:04.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:04.335][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:04.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:04.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:04.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:04.338][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:04.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:04.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:04.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:04.342][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:04.343][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:04.344][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:04.348][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:04.349][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:04.349][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:04.350][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:04.351][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:04.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:04.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:04.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:04.355][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:04.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:04.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:04.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:04.359][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:04.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:04.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:04.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
sched.DEBUG[2025-07-26 16:02:04.363][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-07-26 16:02:04.365][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-07-26 16:02:04.367][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/e0540b0a9d3ba75ce1522ce23f76319e.content.
sched.DEBUG[2025-07-26 16:02:04.368][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-07-26 16:02:04.370][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:04.371][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:04.372][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:04.376][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:04.377][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:04.377][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:04.378][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:04.379][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:04.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:04.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:04.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:04.383][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:04.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:04.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:04.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:04.387][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:04.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:04.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:04.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:04.390][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:04.391][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:04.392][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:04.396][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:04.397][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:04.398][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:04.398][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:04.400][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:04.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:04.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:04.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:04.403][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:04.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:04.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:04.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:04.407][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:04.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:04.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:04.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:04.411][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:04.411][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:04.412][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:04.416][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:04.417][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:04.418][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:04.419][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:04.420][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:04.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:04.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:04.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:04.423][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:04.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:04.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:04.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:04.427][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:04.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:04.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:04.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:04.431][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-07-26 16:02:04.432][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:04.433][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:04.434][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:04.438][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:04.439][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:04.440][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:04.440][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:04.442][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:04.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:04.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:04.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:04.445][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:04.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:04.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:04.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:04.449][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:04.450][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-07-26 16:02:04.451][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-26 16:02:04.451][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-26 16:02:04.452][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:04.453][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:04.454][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:04.455][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:04.456][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:04.457][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:04.458][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:04.459][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:04.460][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:04.460][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:04.461][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:04.462][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:04.467][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:04.469][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:04.469][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:04.470][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-26 16:02:04.471][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:04.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:04.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:04.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:04.475][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:04.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:04.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:04.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:04.479][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:04.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:04.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:04.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:04.483][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [7799].
biodb.DEBUG[2025-07-26 16:02:04.484][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:04.484][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:04.485][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:04.489][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:04.490][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:04.491][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:04.492][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:04.493][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:04.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:04.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:04.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:04.496][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:04.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:04.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:04.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:04.500][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:04.501][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-07-26 16:02:04.502][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-26 16:02:04.502][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-26 16:02:04.503][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:04.504][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:04.505][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:04.506][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:04.507][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:04.508][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:04.509][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:04.510][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:04.510][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:04.511][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:04.512][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:04.513][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:04.514][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:04.515][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:04.516][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:04.517][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-26 16:02:04.518][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:04.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:04.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:04.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:04.521][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:04.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:04.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:04.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:04.525][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:04.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:04.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:04.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:04.529][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [71954].
biodb.DEBUG[2025-07-26 16:02:04.530][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:04.530][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:04.531][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:04.535][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:04.536][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:04.537][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:04.538][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:04.539][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:04.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:04.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:04.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:04.543][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:04.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:04.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:04.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:04.546][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:04.547][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-07-26 16:02:04.548][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-26 16:02:04.549][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-26 16:02:04.550][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:04.550][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:04.551][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:04.552][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:04.553][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:04.554][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:04.555][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:04.556][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:04.557][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:04.558][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:04.559][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:04.559][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:04.560][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:04.561][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:04.562][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:04.563][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-26 16:02:04.564][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:04.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:04.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:04.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:04.568][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:04.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:04.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:04.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:04.571][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:04.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:04.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:04.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:04.575][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [197612].
biodb.DEBUG[2025-07-26 16:02:04.576][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-07-26 16:02:04.577][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-07-26 16:02:04.594][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:04.595][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:04.596][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:04.599][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:04.600][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:04.601][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:04.602][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-07-26 16:02:04.604][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.7*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-07-26 16:02:04.607][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-07-26 16:02:04.610][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/52d6fe8916b2b36c38f3e0a454a0ac24.content.
sched.DEBUG[2025-07-26 16:02:04.611][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-07-26 16:02:04.613][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:04.614][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:04.615][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:04.618][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:04.619][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:04.620][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:04.621][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:04.622][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:04.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:04.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:04.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:04.626][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:04.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:04.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:04.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:04.629][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:04.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:04.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:04.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:04.633][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:04.634][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:04.635][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:04.638][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:04.639][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:04.640][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:04.641][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:04.642][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:04.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:04.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:04.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:04.646][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:04.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:04.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:04.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:04.649][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:04.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:04.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:04.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:04.653][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:04.654][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:04.655][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:04.659][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:04.659][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:04.660][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:04.661][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-26 16:02:04.662][private$loadEntries] Creating entries from ids [1]: "28243".
biodb.DEBUG[2025-07-26 16:02:04.663][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-26 16:02:04.664][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-26 16:02:04.669][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/28243.xml.
biodb.DEBUG[2025-07-26 16:02:04.670][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-26 16:02:04.671][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-26 16:02:04.672][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-26 16:02:04.673][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:04.674][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:04.675][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:04.679][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:04.680][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:04.681][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:04.681][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:04.684][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:04.685][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:04.685][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:04.686][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:04.688][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:04.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:04.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:04.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:04.691][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:04.692][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:04.693][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:04.694][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:04.695][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:04.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:04.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:04.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:04.699][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:04.700][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:04.701][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:04.702][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:04.703][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:04.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:04.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:04.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:04.707][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:04.708][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:04.709][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:04.709][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:04.711][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:04.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:04.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:04.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:04.714][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:04.715][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:04.716][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:04.717][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:04.718][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:04.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:04.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:04.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:04.727][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:04.728][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:04.729][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:04.730][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:04.731][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:04.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:04.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:04.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:04.735][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-26 16:02:04.736][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:04.737][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:04.738][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:04.739][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-26 16:02:04.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:04.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:04.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:04.742][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:04.743][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:04.744][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:04.745][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:04.746][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:04.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:04.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:04.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:04.750][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:04.751][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:04.752][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:04.753][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:04.754][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:04.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:04.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:04.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:04.758][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-26 16:02:04.759][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:04.759][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:04.760][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:04.761][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-26 16:02:04.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:04.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:04.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:04.765][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:04.766][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:04.767][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:04.768][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:04.769][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:04.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:04.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:04.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:04.773][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:04.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:04.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:04.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:04.776][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:04.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:04.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:04.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:04.780][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:04.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:04.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:04.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:04.783][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:04.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:04.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:04.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:04.787][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:04.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:04.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:04.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:04.790][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:04.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:04.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:04.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:04.794][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:04.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:04.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:04.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:04.798][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:04.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:04.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:04.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:04.802][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:04.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:04.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:04.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:04.805][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:04.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:04.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:04.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:04.809][self$createEntryFromContent] Accession numbers: 28243.
biodb.TRACE[2025-07-26 16:02:04.810][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:04.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:04.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:04.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:04.813][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:04.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:04.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:04.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:04.817][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:04.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:04.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:04.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:04.821][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:04.822][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:04.822][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:04.827][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:04.828][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:04.828][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:04.829][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:04.830][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:04.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:04.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:04.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:04.834][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:04.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:04.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:04.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:04.838][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:04.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:04.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:04.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:04.841][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:04.842][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:04.843][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:04.847][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:04.848][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:04.849][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:04.850][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-26 16:02:04.851][private$loadEntries] Creating entries from ids [1]: "70786".
biodb.DEBUG[2025-07-26 16:02:04.851][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-26 16:02:04.853][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-26 16:02:04.857][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/70786.xml.
biodb.DEBUG[2025-07-26 16:02:04.858][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-26 16:02:04.859][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-26 16:02:04.860][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-26 16:02:04.862][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:04.862][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:04.863][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:04.867][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:04.868][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:04.869][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:04.870][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:04.872][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:04.873][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:04.874][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:04.875][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:04.876][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:04.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:04.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:04.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:04.880][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:04.881][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:04.882][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:04.883][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:04.884][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:04.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:04.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:04.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:04.888][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:04.889][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:04.889][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:04.890][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:04.892][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:04.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:04.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:04.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:04.895][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:04.896][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:04.897][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:04.898][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:04.899][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:04.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:04.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:04.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:04.903][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:04.904][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:04.905][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:04.906][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:04.907][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:04.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:04.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:04.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:04.910][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:04.911][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:04.912][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:04.913][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:04.914][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-26 16:02:04.915][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:04.916][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:04.917][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:04.918][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-26 16:02:04.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:04.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:04.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:04.922][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:04.923][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:04.924][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:04.925][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:04.926][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:04.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:04.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:04.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:04.930][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:04.931][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:04.931][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:04.932][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:04.934][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:04.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:04.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:04.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:04.937][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-26 16:02:04.938][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:04.939][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:04.940][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:04.941][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-26 16:02:04.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:04.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:04.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:04.945][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:04.946][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:04.947][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:04.948][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:04.949][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:04.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:04.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:04.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:04.952][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:04.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:04.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:04.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:04.956][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:04.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:04.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:04.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:04.960][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:04.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:04.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:04.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:04.963][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:04.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:04.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:04.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:04.967][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:04.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:04.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:04.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:04.971][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:04.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:04.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:04.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:04.974][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:04.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:04.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:04.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:04.983][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:04.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:04.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:04.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:04.986][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:04.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:04.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:04.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:04.990][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:04.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:04.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:04.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:04.994][self$createEntryFromContent] Accession numbers: 70786.
biodb.TRACE[2025-07-26 16:02:04.995][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:04.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:04.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:04.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:04.998][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:04.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:05.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:05.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:05.002][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:05.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:05.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:05.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:05.005][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:05.006][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:05.007][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:05.011][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:05.012][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:05.013][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:05.014][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-26 16:02:05.015][private$loadEntries] Creating entries from ids [1]: "78144".
biodb.DEBUG[2025-07-26 16:02:05.016][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-26 16:02:05.017][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-26 16:02:05.019][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/78144.xml.
biodb.DEBUG[2025-07-26 16:02:05.020][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-26 16:02:05.021][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-26 16:02:05.022][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-26 16:02:05.024][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:05.025][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:05.026][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:05.030][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:05.031][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:05.031][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:05.032][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:05.034][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:05.035][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:05.036][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:05.037][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:05.038][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:05.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:05.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:05.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:05.042][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:05.043][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:05.044][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:05.045][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:05.046][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:05.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:05.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:05.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:05.049][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:05.050][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:05.051][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:05.052][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:05.053][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:05.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:05.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:05.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:05.057][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:05.058][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:05.059][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:05.060][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:05.061][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:05.062][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:05.063][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:05.063][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:05.065][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:05.066][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:05.066][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:05.067][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:05.068][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-26 16:02:05.069][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:05.070][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:05.071][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:05.072][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-26 16:02:05.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:05.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:05.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:05.076][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:05.077][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:05.078][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:05.078][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:05.080][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:05.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:05.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:05.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:05.083][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:05.084][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:05.085][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:05.086][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:05.087][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:05.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:05.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:05.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:05.091][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-26 16:02:05.092][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:05.093][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:05.094][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:05.095][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-26 16:02:05.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:05.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:05.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:05.099][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:05.100][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:05.100][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:05.101][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:05.102][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:05.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:05.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:05.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:05.106][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:05.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:05.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:05.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:05.110][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:05.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:05.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:05.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:05.113][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:05.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:05.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:05.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:05.117][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:05.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:05.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:05.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:05.121][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:05.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:05.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:05.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:05.124][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:05.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:05.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:05.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:05.128][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:05.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:05.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:05.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:05.132][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:05.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:05.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:05.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:05.136][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:05.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:05.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:05.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:05.139][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:05.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:05.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:05.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:05.143][self$createEntryFromContent] Accession numbers: 78144.
biodb.TRACE[2025-07-26 16:02:05.144][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:05.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:05.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:05.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:05.148][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:05.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:05.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:05.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:05.151][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:05.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:05.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:05.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:05.155][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-07-26 16:02:05.157][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:05.157][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:05.158][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:05.162][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:05.163][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:05.164][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:05.165][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:05.166][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:05.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:05.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:05.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:05.170][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:05.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:05.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:05.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:05.174][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:05.174][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-07-26 16:02:05.175][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-26 16:02:05.176][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-26 16:02:05.177][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:05.178][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:05.179][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:05.180][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:05.181][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:05.182][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:05.183][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:05.184][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:05.185][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:05.186][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:05.186][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:05.187][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:05.188][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:05.189][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:05.190][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:05.191][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-26 16:02:05.192][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:05.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:05.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:05.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:05.196][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:05.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:05.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:05.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:05.199][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:05.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:05.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:05.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:05.203][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2025-07-26 16:02:05.204][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:05.205][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:05.206][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:05.210][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:05.211][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:05.212][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:05.212][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:05.213][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:05.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:05.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:05.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:05.217][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:05.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:05.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:05.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:05.221][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:05.222][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-07-26 16:02:05.223][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-26 16:02:05.223][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-26 16:02:05.224][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:05.225][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:05.226][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:05.227][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:05.232][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:05.234][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:05.235][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:05.235][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:05.236][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:05.237][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:05.238][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:05.239][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:05.240][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:05.241][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:05.242][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:05.243][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-26 16:02:05.244][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:05.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:05.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:05.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:05.247][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:05.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:05.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:05.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:05.251][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:05.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:05.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:05.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:05.255][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [28243].
biodb.DEBUG[2025-07-26 16:02:05.256][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:05.256][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:05.257][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:05.261][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:05.262][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:05.263][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:05.264][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:05.265][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:05.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:05.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:05.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:05.268][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:05.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:05.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:05.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:05.272][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:05.273][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-07-26 16:02:05.274][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-26 16:02:05.275][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-26 16:02:05.275][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:05.276][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:05.277][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:05.278][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:05.279][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:05.280][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:05.281][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:05.282][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:05.283][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:05.283][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:05.284][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:05.285][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:05.286][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:05.287][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:05.288][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:05.289][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-26 16:02:05.290][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:05.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:05.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:05.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:05.293][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:05.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:05.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:05.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:05.297][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:05.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:05.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:05.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:05.301][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [78144].
biodb.DEBUG[2025-07-26 16:02:05.302][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-07-26 16:02:05.303][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-07-26 16:02:05.304][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:05.305][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:05.306][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:05.310][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:05.311][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:05.312][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:05.313][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-07-26 16:02:05.315][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.6*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-07-26 16:02:05.317][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-07-26 16:02:05.323][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/a1f794ee7474001c459ff6d20307d75d.content.
sched.DEBUG[2025-07-26 16:02:05.324][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-07-26 16:02:05.328][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:05.329][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:05.330][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:05.334][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:05.335][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:05.335][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:05.336][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:05.337][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:05.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:05.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:05.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:05.341][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:05.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:05.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:05.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:05.345][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:05.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:05.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:05.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:05.349][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:05.349][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:05.350][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:05.354][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:05.355][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:05.356][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:05.357][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:05.358][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:05.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:05.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:05.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:05.361][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:05.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:05.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:05.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:05.365][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:05.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:05.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:05.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:05.369][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:05.370][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:05.371][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:05.375][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:05.375][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:05.376][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:05.377][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:05.378][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:05.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:05.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:05.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:05.382][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:05.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:05.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:05.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:05.386][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:05.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:05.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:05.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:05.389][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-07-26 16:02:05.391][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:05.392][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:05.392][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:05.396][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:05.397][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:05.398][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:05.399][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:05.400][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:05.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:05.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:05.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:05.404][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:05.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:05.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:05.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:05.407][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:05.408][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-07-26 16:02:05.409][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-26 16:02:05.410][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-26 16:02:05.411][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:05.412][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:05.413][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:05.414][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:05.415][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:05.415][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:05.416][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:05.417][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:05.418][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:05.419][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:05.420][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:05.421][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:05.422][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:05.423][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:05.424][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:05.425][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-26 16:02:05.425][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:05.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:05.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:05.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:05.429][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:05.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:05.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:05.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:05.433][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:05.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:05.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:05.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:05.437][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2025-07-26 16:02:05.438][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:05.439][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:05.440][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:05.444][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:05.445][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:05.445][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:05.446][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:05.447][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:05.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:05.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:05.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:05.451][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:05.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:05.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:05.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:05.455][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:05.456][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-07-26 16:02:05.456][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-26 16:02:05.457][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-26 16:02:05.458][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:05.459][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:05.460][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:05.461][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:05.462][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:05.463][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:05.464][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:05.465][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:05.465][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:05.466][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:05.467][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:05.468][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:05.469][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:05.470][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:05.471][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:05.472][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-26 16:02:05.473][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:05.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:05.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:05.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:05.476][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:05.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:05.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:05.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:05.480][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:05.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:05.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:05.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:05.489][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [16587].
biodb.DEBUG[2025-07-26 16:02:05.490][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:05.491][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:05.491][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:05.496][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:05.496][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:05.497][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:05.498][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:05.499][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:05.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:05.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:05.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:05.503][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:05.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:05.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:05.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:05.506][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:05.507][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-07-26 16:02:05.508][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-26 16:02:05.509][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-26 16:02:05.510][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:05.511][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:05.512][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:05.512][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:05.513][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:05.514][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:05.515][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:05.516][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:05.517][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:05.518][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:05.519][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:05.519][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:05.520][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:05.521][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:05.522][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:05.523][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-26 16:02:05.524][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:05.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:05.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:05.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:05.528][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:05.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:05.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:05.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:05.531][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:05.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:05.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:05.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:05.535][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [19804].
biodb.DEBUG[2025-07-26 16:02:05.536][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-07-26 16:02:05.537][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-07-26 16:02:05.539][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:05.539][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:05.540][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:05.544][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:05.545][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:05.546][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:05.547][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-07-26 16:02:05.549][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.3*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-07-26 16:02:05.551][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-07-26 16:02:05.556][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/fee290bbc11906f18fd9eae3d71c81ab.content.
sched.DEBUG[2025-07-26 16:02:05.557][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-07-26 16:02:05.559][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:05.560][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:05.561][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:05.565][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:05.566][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:05.566][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:05.567][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:05.568][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:05.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:05.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:05.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:05.572][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:05.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:05.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:05.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:05.576][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:05.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:05.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:05.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:05.579][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:05.580][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:05.581][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:05.585][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:05.586][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:05.586][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:05.587][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-26 16:02:05.588][private$loadEntries] Creating entries from ids [1]: "47739".
biodb.DEBUG[2025-07-26 16:02:05.589][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-26 16:02:05.591][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-26 16:02:05.594][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/47739.xml.
biodb.DEBUG[2025-07-26 16:02:05.595][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-26 16:02:05.596][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-26 16:02:05.597][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-26 16:02:05.598][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:05.599][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:05.600][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:05.604][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:05.605][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:05.606][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:05.607][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:05.609][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:05.610][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:05.611][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:05.611][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:05.613][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:05.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:05.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:05.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:05.616][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:05.617][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:05.618][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:05.619][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:05.620][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:05.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:05.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:05.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:05.624][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:05.625][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:05.626][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:05.627][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:05.628][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:05.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:05.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:05.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:05.632][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:05.633][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:05.633][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:05.634][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:05.635][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:05.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:05.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:05.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:05.639][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:05.640][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:05.641][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:05.642][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:05.643][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:05.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:05.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:05.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:05.647][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:05.648][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:05.649][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:05.650][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:05.651][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-26 16:02:05.652][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:05.653][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:05.653][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:05.655][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-26 16:02:05.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:05.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:05.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:05.658][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:05.659][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:05.660][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:05.661][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:05.662][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:05.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:05.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:05.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:05.666][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:05.667][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:05.668][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:05.669][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:05.670][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:05.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:05.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:05.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:05.674][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-26 16:02:05.675][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:05.675][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:05.676][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:05.677][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-26 16:02:05.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:05.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:05.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:05.681][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:05.682][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:05.683][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:05.684][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:05.685][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:05.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:05.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:05.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:05.689][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:05.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:05.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:05.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:05.692][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:05.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:05.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:05.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:05.696][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:05.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:05.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:05.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:05.700][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:05.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:05.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:05.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:05.703][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:05.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:05.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:05.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:05.707][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:05.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:05.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:05.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:05.711][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:05.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:05.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:05.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:05.715][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:05.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:05.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:05.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:05.718][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:05.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:05.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:05.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:05.722][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:05.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:05.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:05.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:05.725][self$createEntryFromContent] Accession numbers: 47739.
biodb.TRACE[2025-07-26 16:02:05.726][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:05.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:05.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:05.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:05.730][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:05.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:05.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:05.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:05.734][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:05.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:05.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:05.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:05.742][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:05.743][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:05.744][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:05.748][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:05.749][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:05.750][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:05.751][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-26 16:02:05.752][private$loadEntries] Creating entries from ids [1]: "51744".
biodb.DEBUG[2025-07-26 16:02:05.753][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-26 16:02:05.754][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-26 16:02:05.759][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/51744.xml.
biodb.DEBUG[2025-07-26 16:02:05.760][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-26 16:02:05.761][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-26 16:02:05.762][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-26 16:02:05.763][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:05.764][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:05.765][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:05.769][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:05.770][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:05.770][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:05.771][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:05.773][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:05.774][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:05.775][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:05.776][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:05.777][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:05.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:05.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:05.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:05.781][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:05.782][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:05.782][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:05.783][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:05.784][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:05.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:05.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:05.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:05.788][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:05.789][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:05.790][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:05.791][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:05.792][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:05.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:05.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:05.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:05.796][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:05.797][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:05.797][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:05.798][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:05.799][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:05.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:05.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:05.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:05.803][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:05.804][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:05.805][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:05.806][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:05.807][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:05.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:05.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:05.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:05.810][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:05.811][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:05.812][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:05.813][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:05.814][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-26 16:02:05.815][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:05.816][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:05.817][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:05.818][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-26 16:02:05.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:05.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:05.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:05.822][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:05.823][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:05.824][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:05.824][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:05.825][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:05.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:05.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:05.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:05.829][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:05.830][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:05.831][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:05.832][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:05.833][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:05.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:05.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:05.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:05.837][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-26 16:02:05.838][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:05.839][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:05.839][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:05.840][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-26 16:02:05.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:05.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:05.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:05.844][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:05.845][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:05.846][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:05.847][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:05.848][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:05.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:05.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:05.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:05.852][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:05.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:05.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:05.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:05.855][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:05.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:05.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:05.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:05.859][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:05.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:05.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:05.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:05.863][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:05.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:05.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:05.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:05.867][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:05.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:05.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:05.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:05.870][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:05.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:05.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:05.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:05.874][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:05.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:05.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:05.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:05.878][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:05.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:05.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:05.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:05.881][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:05.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:05.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:05.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:05.885][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:05.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:05.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:05.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:05.889][self$createEntryFromContent] Accession numbers: 51744.
biodb.TRACE[2025-07-26 16:02:05.890][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:05.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:05.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:05.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:05.893][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:05.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:05.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:05.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:05.897][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:05.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:05.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:05.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:05.901][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:05.901][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:05.902][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:05.906][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:05.907][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:05.908][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:05.909][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-26 16:02:05.910][private$loadEntries] Creating entries from ids [1]: "64473".
biodb.DEBUG[2025-07-26 16:02:05.911][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-26 16:02:05.912][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-26 16:02:05.916][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/64473.xml.
biodb.DEBUG[2025-07-26 16:02:05.917][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-26 16:02:05.918][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-26 16:02:05.920][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-26 16:02:05.921][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:05.922][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:05.923][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:05.927][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:05.928][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:05.928][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:05.929][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:05.932][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:05.933][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:05.933][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:05.934][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:05.935][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:05.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:05.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:05.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:05.939][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:05.940][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:05.941][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:05.942][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:05.943][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:05.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:05.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:05.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:05.947][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:05.948][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:05.949][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:05.950][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:05.951][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:05.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:05.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:05.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:05.955][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:05.956][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:05.956][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:05.957][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:05.958][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:05.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:05.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:05.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:05.962][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:05.963][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:05.964][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:05.965][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:05.966][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:05.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:05.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:05.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:05.970][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:05.971][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:05.972][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:05.973][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:05.974][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-26 16:02:05.975][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:05.976][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:05.976][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:05.977][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-26 16:02:05.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:05.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:05.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:05.981][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:05.982][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:05.983][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:05.984][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:05.985][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:05.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:05.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:05.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:05.989][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:05.990][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:05.991][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:05.992][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:05.993][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:05.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:05.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:06.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:06.001][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-26 16:02:06.002][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:06.003][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:06.004][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:06.005][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-26 16:02:06.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:06.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:06.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:06.009][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:06.010][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:06.011][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:06.012][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:06.013][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:06.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:06.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:06.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:06.017][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:06.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:06.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:06.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:06.020][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:06.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:06.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:06.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:06.024][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:06.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:06.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:06.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:06.027][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:06.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:06.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:06.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:06.031][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:06.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:06.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:06.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:06.035][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:06.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:06.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:06.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:06.038][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:06.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:06.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:06.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:06.042][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:06.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:06.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:06.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:06.046][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:06.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:06.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:06.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:06.049][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:06.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:06.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:06.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:06.053][self$createEntryFromContent] Accession numbers: 64473.
biodb.TRACE[2025-07-26 16:02:06.054][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:06.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:06.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:06.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:06.057][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:06.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:06.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:06.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:06.061][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:06.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:06.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:06.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:06.065][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:06.065][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:06.066][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:06.070][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:06.071][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:06.072][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:06.073][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:06.074][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:06.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:06.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:06.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:06.077][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:06.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:06.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:06.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:06.081][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:06.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:06.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:06.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:06.085][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:06.086][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:06.086][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:06.090][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:06.091][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:06.092][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:06.093][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-26 16:02:06.094][private$loadEntries] Creating entries from ids [1]: "75244".
biodb.DEBUG[2025-07-26 16:02:06.095][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-26 16:02:06.096][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-26 16:02:06.101][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/75244.xml.
biodb.DEBUG[2025-07-26 16:02:06.102][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-26 16:02:06.103][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-26 16:02:06.104][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-26 16:02:06.106][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:06.106][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:06.107][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:06.111][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:06.112][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:06.113][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:06.114][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:06.116][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:06.117][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:06.118][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:06.119][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:06.120][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:06.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:06.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:06.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:06.124][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:06.125][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:06.125][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:06.126][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:06.128][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:06.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:06.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:06.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:06.131][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:06.132][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:06.133][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:06.134][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:06.135][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:06.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:06.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:06.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:06.139][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:06.140][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:06.141][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:06.142][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:06.143][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:06.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:06.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:06.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:06.147][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:06.148][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:06.148][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:06.149][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:06.150][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:06.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:06.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:06.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:06.154][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:06.155][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:06.156][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:06.157][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:06.158][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:06.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:06.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:06.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:06.162][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-26 16:02:06.163][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:06.164][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:06.164][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:06.166][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-26 16:02:06.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:06.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:06.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:06.169][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:06.170][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:06.171][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:06.172][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:06.173][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:06.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:06.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:06.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:06.177][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:06.178][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:06.179][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:06.180][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:06.181][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:06.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:06.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:06.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:06.184][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-26 16:02:06.185][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:06.186][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:06.187][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:06.188][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-26 16:02:06.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:06.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:06.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:06.192][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:06.193][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:06.194][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:06.195][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:06.196][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:06.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:06.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:06.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:06.200][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:06.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:06.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:06.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:06.203][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:06.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:06.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:06.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:06.207][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:06.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:06.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:06.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:06.211][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:06.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:06.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:06.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:06.215][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:06.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:06.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:06.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:06.218][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:06.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:06.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:06.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:06.222][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:06.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:06.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:06.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:06.226][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:06.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:06.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:06.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:06.229][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:06.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:06.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:06.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:06.233][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:06.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:06.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:06.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:06.237][self$createEntryFromContent] Accession numbers: 75244.
biodb.TRACE[2025-07-26 16:02:06.238][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:06.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:06.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:06.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:06.241][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:06.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:06.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:06.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:06.245][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:06.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:06.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:06.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:06.253][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:06.254][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:06.255][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:06.260][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:06.261][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:06.261][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:06.262][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-26 16:02:06.263][private$loadEntries] Creating entries from ids [1]: "75311".
biodb.DEBUG[2025-07-26 16:02:06.264][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-26 16:02:06.265][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-26 16:02:06.269][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/75311.xml.
biodb.DEBUG[2025-07-26 16:02:06.270][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-26 16:02:06.271][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-26 16:02:06.272][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-26 16:02:06.274][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:06.275][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:06.276][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:06.280][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:06.280][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:06.281][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:06.282][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:06.284][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:06.285][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:06.286][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:06.287][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:06.288][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:06.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:06.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:06.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:06.292][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:06.292][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:06.293][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:06.294][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:06.295][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:06.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:06.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:06.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:06.299][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:06.300][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:06.301][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:06.302][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:06.303][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:06.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:06.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:06.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:06.306][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:06.307][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:06.308][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:06.309][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:06.310][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:06.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:06.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:06.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:06.314][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:06.315][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:06.316][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:06.317][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:06.318][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:06.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:06.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:06.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:06.321][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:06.322][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:06.323][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:06.324][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:06.325][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:06.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:06.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:06.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:06.329][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-26 16:02:06.330][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:06.331][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:06.331][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:06.333][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-26 16:02:06.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:06.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:06.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:06.336][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:06.337][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:06.338][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:06.339][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:06.340][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:06.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:06.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:06.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:06.344][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:06.345][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:06.346][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:06.346][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:06.348][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:06.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:06.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:06.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:06.351][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-26 16:02:06.352][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:06.353][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:06.354][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:06.355][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-26 16:02:06.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:06.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:06.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:06.359][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:06.360][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:06.361][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:06.362][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:06.363][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:06.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:06.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:06.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:06.366][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:06.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:06.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:06.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:06.370][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:06.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:06.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:06.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:06.374][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:06.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:06.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:06.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:06.377][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:06.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:06.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:06.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:06.381][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:06.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:06.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:06.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:06.385][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:06.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:06.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:06.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:06.388][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:06.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:06.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:06.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:06.392][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:06.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:06.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:06.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:06.396][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:06.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:06.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:06.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:06.399][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:06.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:06.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:06.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:06.403][self$createEntryFromContent] Accession numbers: 75311.
biodb.TRACE[2025-07-26 16:02:06.404][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:06.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:06.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:06.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:06.408][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:06.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:06.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:06.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:06.411][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:06.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:06.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:06.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:06.415][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:06.416][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:06.417][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:06.421][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:06.422][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:06.423][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:06.423][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-26 16:02:06.424][private$loadEntries] Creating entries from ids [1]: "75350".
biodb.DEBUG[2025-07-26 16:02:06.425][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-26 16:02:06.427][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-26 16:02:06.430][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/75350.xml.
biodb.DEBUG[2025-07-26 16:02:06.431][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-26 16:02:06.432][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-26 16:02:06.433][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-26 16:02:06.435][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:06.436][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:06.436][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:06.440][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:06.441][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:06.442][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:06.443][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:06.445][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:06.446][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:06.447][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:06.448][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:06.449][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:06.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:06.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:06.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:06.453][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:06.454][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:06.454][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:06.455][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:06.457][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:06.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:06.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:06.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:06.460][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:06.461][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:06.462][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:06.463][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:06.464][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:06.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:06.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:06.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:06.468][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:06.469][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:06.470][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:06.471][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:06.472][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:06.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:06.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:06.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:06.475][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:06.476][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:06.477][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:06.478][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:06.479][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:06.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:06.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:06.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:06.483][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:06.484][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:06.485][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:06.486][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:06.487][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-26 16:02:06.488][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:06.489][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:06.490][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:06.491][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-26 16:02:06.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:06.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:06.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:06.495][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:06.495][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:06.496][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:06.497][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:06.498][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:06.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:06.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:06.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:06.502][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:06.503][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:06.504][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:06.510][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:06.511][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:06.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:06.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:06.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:06.515][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-26 16:02:06.516][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:06.517][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:06.518][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:06.519][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-26 16:02:06.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:06.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:06.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:06.522][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:06.523][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:06.524][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:06.525][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:06.526][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:06.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:06.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:06.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:06.530][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:06.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:06.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:06.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:06.533][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:06.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:06.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:06.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:06.537][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:06.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:06.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:06.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:06.541][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:06.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:06.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:06.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:06.544][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:06.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:06.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:06.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:06.548][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:06.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:06.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:06.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:06.551][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:06.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:06.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:06.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:06.555][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:06.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:06.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:06.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:06.559][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:06.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:06.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:06.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:06.562][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:06.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:06.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:06.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:06.566][self$createEntryFromContent] Accession numbers: 75350.
biodb.TRACE[2025-07-26 16:02:06.567][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:06.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:06.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:06.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:06.571][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:06.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:06.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:06.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:06.574][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:06.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:06.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:06.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:06.578][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:06.579][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:06.580][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:06.584][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:06.585][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:06.585][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:06.586][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-26 16:02:06.587][private$loadEntries] Creating entries from ids [1]: "87236".
biodb.DEBUG[2025-07-26 16:02:06.588][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-26 16:02:06.590][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-26 16:02:06.594][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/87236.xml.
biodb.DEBUG[2025-07-26 16:02:06.595][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-26 16:02:06.596][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-26 16:02:06.597][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-26 16:02:06.598][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:06.599][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:06.600][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:06.604][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:06.605][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:06.605][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:06.606][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:06.608][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:06.609][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:06.610][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:06.611][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:06.612][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:06.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:06.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:06.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:06.616][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:06.617][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:06.618][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:06.619][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:06.620][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:06.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:06.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:06.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:06.624][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:06.625][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:06.625][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:06.626][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:06.627][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:06.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:06.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:06.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:06.631][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:06.632][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:06.633][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:06.634][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:06.635][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:06.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:06.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:06.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:06.639][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:06.640][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:06.641][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:06.641][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:06.643][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:06.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:06.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:06.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:06.646][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:06.647][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:06.648][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:06.649][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:06.650][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-26 16:02:06.651][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:06.652][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:06.653][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:06.654][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-26 16:02:06.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:06.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:06.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:06.658][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:06.659][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:06.660][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:06.660][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:06.661][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:06.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:06.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:06.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:06.665][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:06.666][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:06.667][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:06.668][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:06.669][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:06.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:06.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:06.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:06.673][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-26 16:02:06.674][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:06.675][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:06.676][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:06.677][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-26 16:02:06.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:06.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:06.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:06.680][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:06.681][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:06.682][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:06.683][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:06.684][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:06.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:06.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:06.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:06.688][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:06.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:06.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:06.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:06.692][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:06.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:06.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:06.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:06.695][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:06.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:06.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:06.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:06.699][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:06.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:06.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:06.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:06.703][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:06.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:06.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:06.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:06.706][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:06.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:06.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:06.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:06.710][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:06.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:06.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:06.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:06.714][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:06.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:06.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:06.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:06.717][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:06.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:06.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:06.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:06.721][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:06.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:06.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:06.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:06.725][self$createEntryFromContent] Accession numbers: 87236.
biodb.TRACE[2025-07-26 16:02:06.726][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:06.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:06.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:06.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:06.729][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:06.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:06.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:06.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:06.733][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:06.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:06.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:06.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:06.737][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:06.738][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:06.738][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:06.743][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:06.743][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:06.744][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:06.745][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-26 16:02:06.746][private$loadEntries] Creating entries from ids [1]: "132193".
biodb.DEBUG[2025-07-26 16:02:06.747][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-26 16:02:06.748][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-26 16:02:06.752][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/132193.xml.
biodb.DEBUG[2025-07-26 16:02:06.753][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-26 16:02:06.755][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-26 16:02:06.756][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-26 16:02:06.757][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:06.758][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:06.759][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:06.767][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:06.768][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:06.769][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:06.770][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:06.772][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:06.773][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:06.774][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:06.775][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:06.776][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:06.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:06.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:06.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:06.780][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:06.781][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:06.781][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:06.782][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:06.783][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:06.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:06.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:06.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:06.787][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:06.788][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:06.789][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:06.790][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:06.791][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:06.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:06.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:06.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:06.794][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:06.795][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:06.796][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:06.797][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:06.798][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:06.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:06.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:06.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:06.802][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:06.803][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:06.804][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:06.805][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:06.806][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:06.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:06.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:06.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:06.809][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:06.810][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:06.811][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:06.812][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:06.813][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-26 16:02:06.814][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:06.815][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:06.816][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:06.817][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-26 16:02:06.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:06.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:06.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:06.820][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:06.821][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:06.822][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:06.823][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:06.824][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:06.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:06.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:06.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:06.828][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:06.829][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:06.830][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:06.831][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:06.832][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:06.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:06.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:06.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:06.836][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-26 16:02:06.836][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:06.837][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:06.838][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:06.839][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-26 16:02:06.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:06.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:06.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:06.843][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:06.844][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:06.845][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:06.846][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:06.847][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:06.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:06.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:06.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:06.850][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:06.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:06.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:06.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:06.854][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:06.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:06.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:06.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:06.858][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:06.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:06.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:06.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:06.861][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:06.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:06.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:06.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:06.865][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:06.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:06.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:06.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:06.869][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:06.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:06.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:06.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:06.872][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:06.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:06.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:06.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:06.876][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:06.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:06.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:06.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:06.880][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:06.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:06.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:06.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:06.883][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:06.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:06.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:06.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:06.887][self$createEntryFromContent] Accession numbers: 132193.
biodb.TRACE[2025-07-26 16:02:06.888][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:06.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:06.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:06.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:06.892][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:06.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:06.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:06.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:06.895][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:06.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:06.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:06.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:06.899][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:06.900][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:06.901][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:06.905][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:06.906][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:06.906][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:06.907][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-26 16:02:06.908][private$loadEntries] Creating entries from ids [1]: "146002".
biodb.DEBUG[2025-07-26 16:02:06.909][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-26 16:02:06.911][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-26 16:02:06.914][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/146002.xml.
biodb.DEBUG[2025-07-26 16:02:06.915][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-26 16:02:06.917][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-26 16:02:06.918][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-26 16:02:06.919][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:06.920][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:06.921][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:06.925][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:06.926][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:06.926][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:06.927][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:06.929][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:06.930][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:06.931][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:06.932][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:06.933][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:06.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:06.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:06.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:06.937][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:06.938][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:06.939][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:06.940][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:06.941][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:06.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:06.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:06.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:06.944][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:06.945][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:06.946][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:06.947][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:06.948][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:06.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:06.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:06.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:06.952][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:06.953][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:06.954][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:06.955][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:06.956][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:06.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:06.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:06.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:06.960][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:06.960][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:06.961][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:06.962][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:06.963][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:06.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:06.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:06.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:06.967][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:06.968][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:06.969][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:06.970][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:06.971][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-26 16:02:06.972][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:06.973][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:06.974][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:06.975][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-26 16:02:06.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:06.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:06.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:06.978][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:06.979][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:06.980][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:06.981][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:06.982][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:06.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:06.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:06.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:06.986][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:06.987][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:06.988][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:06.989][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:06.990][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:06.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:06.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:06.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:06.994][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-26 16:02:06.995][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:06.995][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:06.996][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:06.997][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-26 16:02:06.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:06.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:07.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:07.001][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:07.002][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:07.003][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:07.004][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:07.005][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:07.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:07.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:07.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:07.009][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:07.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:07.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:07.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:07.017][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:07.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:07.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:07.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:07.021][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:07.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:07.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:07.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:07.024][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:07.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:07.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:07.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:07.028][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:07.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:07.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:07.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:07.032][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:07.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:07.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:07.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:07.035][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:07.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:07.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:07.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:07.039][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:07.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:07.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:07.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:07.043][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:07.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:07.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:07.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:07.046][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:07.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:07.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:07.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:07.050][self$createEntryFromContent] Accession numbers: 146002.
biodb.TRACE[2025-07-26 16:02:07.051][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:07.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:07.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:07.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:07.054][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:07.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:07.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:07.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:07.058][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:07.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:07.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:07.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:07.062][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:07.062][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:07.063][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:07.067][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:07.068][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:07.069][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:07.070][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-26 16:02:07.071][private$loadEntries] Creating entries from ids [1]: "65641".
biodb.DEBUG[2025-07-26 16:02:07.072][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-26 16:02:07.073][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-26 16:02:07.077][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/65641.xml.
biodb.DEBUG[2025-07-26 16:02:07.078][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-26 16:02:07.079][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-26 16:02:07.080][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-26 16:02:07.081][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:07.082][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:07.083][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:07.087][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:07.088][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:07.089][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:07.090][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:07.092][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:07.093][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:07.093][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:07.094][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:07.095][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:07.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:07.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:07.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:07.099][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:07.100][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:07.101][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:07.102][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:07.103][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:07.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:07.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:07.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:07.107][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:07.108][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:07.109][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:07.109][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:07.111][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:07.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:07.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:07.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:07.114][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:07.115][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:07.116][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:07.117][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:07.118][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:07.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:07.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:07.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:07.122][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:07.123][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:07.124][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:07.125][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:07.126][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:07.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:07.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:07.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:07.130][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:07.131][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:07.131][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:07.132][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:07.133][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-26 16:02:07.134][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:07.135][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:07.136][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:07.137][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-26 16:02:07.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:07.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:07.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:07.141][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:07.142][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:07.143][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:07.144][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:07.145][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:07.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:07.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:07.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:07.149][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:07.150][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:07.151][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:07.152][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:07.153][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:07.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:07.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:07.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:07.157][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-26 16:02:07.158][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:07.159][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:07.159][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:07.160][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-26 16:02:07.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:07.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:07.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:07.164][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:07.165][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:07.166][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:07.167][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:07.168][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:07.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:07.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:07.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:07.172][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:07.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:07.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:07.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:07.176][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:07.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:07.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:07.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:07.179][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:07.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:07.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:07.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:07.183][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:07.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:07.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:07.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:07.187][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:07.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:07.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:07.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:07.190][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:07.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:07.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:07.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:07.194][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:07.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:07.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:07.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:07.198][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:07.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:07.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:07.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:07.201][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:07.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:07.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:07.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:07.205][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:07.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:07.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:07.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:07.209][self$createEntryFromContent] Accession numbers: 65641.
biodb.TRACE[2025-07-26 16:02:07.210][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:07.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:07.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:07.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:07.213][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:07.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:07.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:07.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:07.217][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:07.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:07.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:07.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:07.221][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:07.222][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:07.222][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:07.226][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:07.227][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:07.228][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:07.229][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-26 16:02:07.230][private$loadEntries] Creating entries from ids [1]: "144071".
biodb.DEBUG[2025-07-26 16:02:07.231][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-26 16:02:07.232][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-26 16:02:07.235][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/144071.xml.
biodb.DEBUG[2025-07-26 16:02:07.236][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-26 16:02:07.237][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-26 16:02:07.238][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-26 16:02:07.240][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:07.241][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:07.242][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:07.246][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:07.246][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:07.247][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:07.248][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:07.250][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:07.251][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:07.252][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:07.253][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:07.254][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:07.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:07.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:07.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:07.258][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:07.259][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:07.260][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:07.260][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:07.262][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:07.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:07.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:07.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:07.270][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:07.271][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:07.272][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:07.273][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:07.274][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:07.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:07.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:07.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:07.278][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:07.279][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:07.280][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:07.281][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:07.282][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:07.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:07.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:07.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:07.286][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:07.286][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:07.287][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:07.288][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:07.289][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:07.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:07.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:07.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:07.293][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:07.294][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:07.295][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:07.296][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:07.297][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-26 16:02:07.298][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:07.299][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:07.299][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:07.300][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-26 16:02:07.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:07.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:07.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:07.304][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:07.305][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:07.306][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:07.307][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:07.308][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:07.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:07.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:07.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:07.312][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:07.313][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:07.313][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:07.314][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:07.315][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:07.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:07.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:07.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:07.319][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-26 16:02:07.320][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:07.321][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:07.322][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:07.323][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-26 16:02:07.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:07.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:07.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:07.327][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:07.327][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:07.328][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:07.329][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:07.330][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:07.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:07.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:07.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:07.334][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:07.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:07.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:07.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:07.338][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:07.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:07.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:07.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:07.341][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:07.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:07.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:07.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:07.345][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:07.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:07.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:07.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:07.348][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:07.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:07.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:07.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:07.352][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:07.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:07.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:07.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:07.356][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:07.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:07.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:07.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:07.359][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:07.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:07.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:07.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:07.363][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:07.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:07.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:07.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:07.367][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:07.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:07.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:07.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:07.370][self$createEntryFromContent] Accession numbers: 144071.
biodb.TRACE[2025-07-26 16:02:07.371][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:07.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:07.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:07.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:07.375][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:07.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:07.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:07.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:07.379][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:07.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:07.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:07.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:07.382][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:07.383][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:07.384][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:07.388][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:07.389][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:07.390][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:07.391][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:07.392][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:07.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:07.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:07.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:07.396][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:07.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:07.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:07.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:07.399][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:07.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:07.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:07.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:07.403][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:07.404][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:07.405][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:07.408][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:07.409][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:07.410][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:07.411][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:07.412][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:07.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:07.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:07.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:07.416][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:07.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:07.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:07.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:07.419][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:07.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:07.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:07.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:07.423][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:07.424][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:07.425][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:07.429][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:07.429][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:07.430][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:07.431][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:07.432][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:07.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:07.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:07.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:07.436][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:07.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:07.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:07.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:07.440][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:07.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:07.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:07.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:07.443][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:07.444][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:07.445][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:07.449][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:07.449][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:07.450][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:07.451][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:07.452][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:07.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:07.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:07.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:07.456][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:07.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:07.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:07.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:07.460][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:07.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:07.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:07.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:07.463][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:07.464][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:07.465][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:07.469][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:07.470][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:07.470][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:07.471][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:07.472][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:07.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:07.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:07.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:07.476][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:07.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:07.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:07.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:07.480][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:07.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:07.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:07.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:07.483][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:07.484][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:07.485][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:07.489][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:07.490][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:07.490][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:07.491][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:07.492][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:07.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:07.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:07.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:07.496][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:07.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:07.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:07.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:07.500][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:07.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:07.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:07.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:07.503][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:07.504][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:07.505][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:07.509][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:07.509][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:07.510][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:07.511][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-26 16:02:07.516][private$loadEntries] Creating entries from ids [1]: "168650".
biodb.DEBUG[2025-07-26 16:02:07.518][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-26 16:02:07.519][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-26 16:02:07.522][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/168650.xml.
biodb.DEBUG[2025-07-26 16:02:07.523][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-26 16:02:07.525][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-26 16:02:07.526][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-26 16:02:07.527][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:07.528][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:07.529][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:07.533][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:07.533][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:07.534][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:07.535][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:07.537][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:07.538][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:07.539][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:07.540][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:07.541][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:07.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:07.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:07.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:07.545][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:07.545][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:07.546][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:07.547][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:07.548][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:07.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:07.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:07.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:07.552][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:07.553][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:07.554][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:07.555][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:07.556][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:07.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:07.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:07.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:07.560][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:07.561][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:07.561][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:07.562][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:07.563][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:07.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:07.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:07.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:07.567][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:07.568][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:07.569][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:07.570][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:07.571][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:07.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:07.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:07.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:07.574][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:07.575][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:07.576][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:07.577][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:07.578][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-26 16:02:07.579][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:07.580][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:07.581][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:07.582][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-26 16:02:07.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:07.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:07.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:07.586][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:07.587][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:07.587][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:07.588][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:07.589][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:07.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:07.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:07.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:07.593][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:07.594][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:07.595][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:07.596][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:07.597][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:07.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:07.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:07.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:07.601][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-26 16:02:07.602][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:07.603][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:07.603][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:07.604][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-26 16:02:07.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:07.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:07.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:07.608][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:07.609][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:07.610][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:07.611][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:07.612][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:07.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:07.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:07.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:07.616][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:07.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:07.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:07.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:07.619][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:07.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:07.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:07.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:07.623][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:07.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:07.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:07.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:07.627][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:07.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:07.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:07.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:07.631][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:07.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:07.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:07.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:07.634][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:07.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:07.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:07.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:07.638][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:07.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:07.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:07.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:07.642][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:07.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:07.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:07.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:07.645][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:07.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:07.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:07.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:07.649][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:07.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:07.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:07.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:07.653][self$createEntryFromContent] Accession numbers: 168650.
biodb.TRACE[2025-07-26 16:02:07.654][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:07.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:07.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:07.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:07.657][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:07.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:07.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:07.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:07.661][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:07.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:07.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:07.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:07.665][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:07.666][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:07.666][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:07.671][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:07.672][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:07.672][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:07.673][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:07.674][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:07.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:07.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:07.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:07.678][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:07.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:07.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:07.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:07.682][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:07.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:07.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:07.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:07.685][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:07.686][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:07.687][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:07.691][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:07.692][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:07.693][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:07.694][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-26 16:02:07.695][private$loadEntries] Creating entries from ids [1]: "169305".
biodb.DEBUG[2025-07-26 16:02:07.696][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-26 16:02:07.697][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-26 16:02:07.701][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/169305.xml.
biodb.DEBUG[2025-07-26 16:02:07.701][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-26 16:02:07.703][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-26 16:02:07.704][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-26 16:02:07.705][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:07.706][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:07.707][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:07.711][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:07.712][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:07.713][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:07.713][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:07.716][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:07.717][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:07.718][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:07.718][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:07.720][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:07.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:07.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:07.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:07.723][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:07.724][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:07.725][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:07.726][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:07.727][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:07.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:07.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:07.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:07.731][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:07.732][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:07.733][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:07.734][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:07.735][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:07.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:07.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:07.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:07.739][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:07.740][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:07.741][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:07.741][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:07.743][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:07.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:07.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:07.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:07.746][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:07.747][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:07.748][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:07.749][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:07.750][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:07.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:07.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:07.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:07.754][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:07.755][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:07.756][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:07.756][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:07.758][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-26 16:02:07.759][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:07.759][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:07.760][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:07.761][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-26 16:02:07.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:07.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:07.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:07.765][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:07.771][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:07.772][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:07.773][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:07.774][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:07.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:07.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:07.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:07.778][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:07.779][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:07.780][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:07.781][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:07.782][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:07.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:07.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:07.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:07.786][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-26 16:02:07.787][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:07.788][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:07.789][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:07.790][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-26 16:02:07.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:07.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:07.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:07.793][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:07.794][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:07.795][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:07.796][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:07.797][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:07.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:07.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:07.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:07.801][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:07.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:07.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:07.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:07.804][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:07.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:07.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:07.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:07.808][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:07.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:07.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:07.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:07.812][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:07.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:07.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:07.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:07.815][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:07.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:07.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:07.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:07.819][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:07.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:07.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:07.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:07.822][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:07.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:07.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:07.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:07.826][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:07.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:07.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:07.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:07.830][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:07.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:07.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:07.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:07.833][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:07.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:07.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:07.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:07.837][self$createEntryFromContent] Accession numbers: 169305.
biodb.TRACE[2025-07-26 16:02:07.838][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:07.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:07.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:07.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:07.842][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:07.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:07.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:07.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:07.845][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:07.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:07.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:07.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:07.849][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:07.850][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:07.850][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:07.854][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:07.855][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:07.856][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:07.857][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-26 16:02:07.858][private$loadEntries] Creating entries from ids [1]: "176869".
biodb.DEBUG[2025-07-26 16:02:07.859][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-26 16:02:07.860][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-26 16:02:07.864][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/176869.xml.
biodb.DEBUG[2025-07-26 16:02:07.865][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-26 16:02:07.866][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-26 16:02:07.867][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-26 16:02:07.868][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:07.869][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:07.870][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:07.874][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:07.875][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:07.876][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:07.876][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:07.878][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:07.879][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:07.880][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:07.881][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:07.882][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:07.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:07.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:07.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:07.886][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:07.887][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:07.888][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:07.889][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:07.890][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:07.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:07.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:07.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:07.894][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:07.895][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:07.895][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:07.896][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:07.898][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:07.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:07.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:07.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:07.901][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:07.902][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:07.903][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:07.904][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:07.905][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:07.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:07.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:07.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:07.909][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:07.910][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:07.911][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:07.912][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:07.913][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:07.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:07.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:07.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:07.916][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:07.917][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:07.918][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:07.919][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:07.920][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-26 16:02:07.921][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:07.922][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:07.923][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:07.924][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-26 16:02:07.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:07.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:07.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:07.928][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:07.929][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:07.930][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:07.930][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:07.932][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:07.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:07.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:07.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:07.935][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:07.936][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:07.937][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:07.938][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:07.939][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:07.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:07.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:07.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:07.943][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-26 16:02:07.944][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:07.945][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:07.946][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:07.947][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-26 16:02:07.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:07.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:07.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:07.950][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:07.951][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:07.952][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:07.953][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:07.954][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:07.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:07.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:07.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:07.958][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:07.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:07.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:07.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:07.962][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:07.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:07.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:07.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:07.965][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:07.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:07.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:07.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:07.969][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:07.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:07.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:07.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:07.973][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:07.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:07.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:07.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:07.976][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:07.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:07.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:07.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:07.980][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:07.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:07.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:07.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:07.984][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:07.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:07.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:07.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:07.987][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:07.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:07.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:07.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:07.991][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:07.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:07.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:07.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:07.995][self$createEntryFromContent] Accession numbers: 176869.
biodb.TRACE[2025-07-26 16:02:07.996][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:07.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:07.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:07.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:07.999][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:08.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:08.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:08.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:08.003][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:08.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:08.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:08.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:08.007][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:08.008][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:08.008][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:08.013][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:08.013][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:08.014][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:08.015][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-26 16:02:08.020][private$loadEntries] Creating entries from ids [1]: "185696".
biodb.DEBUG[2025-07-26 16:02:08.022][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-26 16:02:08.023][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-26 16:02:08.027][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/185696.xml.
biodb.DEBUG[2025-07-26 16:02:08.028][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-26 16:02:08.029][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-26 16:02:08.030][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-26 16:02:08.031][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:08.032][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:08.033][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:08.037][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:08.038][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:08.038][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:08.039][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:08.041][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:08.042][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:08.043][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:08.044][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:08.045][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:08.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:08.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:08.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:08.049][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:08.049][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:08.050][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:08.051][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:08.052][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:08.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:08.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:08.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:08.056][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:08.057][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:08.058][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:08.059][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:08.060][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:08.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:08.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:08.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:08.064][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:08.065][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:08.065][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:08.066][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:08.067][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:08.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:08.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:08.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:08.071][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:08.072][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:08.073][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:08.074][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:08.075][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:08.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:08.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:08.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:08.078][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:08.079][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:08.080][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:08.081][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:08.082][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-26 16:02:08.083][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:08.084][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:08.085][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:08.086][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-26 16:02:08.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:08.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:08.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:08.090][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:08.091][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:08.091][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:08.092][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:08.093][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:08.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:08.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:08.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:08.097][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:08.098][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:08.099][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:08.100][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:08.101][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:08.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:08.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:08.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:08.105][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-26 16:02:08.106][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:08.106][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:08.107][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:08.108][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-26 16:02:08.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:08.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:08.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:08.112][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:08.113][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:08.114][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:08.115][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:08.116][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:08.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:08.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:08.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:08.120][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:08.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:08.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:08.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:08.123][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:08.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:08.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:08.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:08.127][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:08.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:08.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:08.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:08.131][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:08.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:08.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:08.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:08.134][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:08.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:08.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:08.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:08.138][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:08.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:08.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:08.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:08.142][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:08.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:08.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:08.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:08.145][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:08.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:08.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:08.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:08.149][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:08.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:08.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:08.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:08.153][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:08.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:08.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:08.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:08.156][self$createEntryFromContent] Accession numbers: 185696.
biodb.TRACE[2025-07-26 16:02:08.157][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:08.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:08.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:08.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:08.161][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:08.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:08.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:08.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:08.165][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:08.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:08.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:08.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:08.168][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:08.169][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:08.170][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:08.174][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:08.175][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:08.176][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:08.177][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-26 16:02:08.178][private$loadEntries] Creating entries from ids [1]: "190762".
biodb.DEBUG[2025-07-26 16:02:08.179][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-26 16:02:08.180][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-26 16:02:08.183][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/190762.xml.
biodb.DEBUG[2025-07-26 16:02:08.184][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-26 16:02:08.185][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-26 16:02:08.186][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-26 16:02:08.188][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:08.189][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:08.190][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:08.194][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:08.195][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:08.195][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:08.196][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:08.198][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:08.199][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:08.200][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:08.201][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:08.202][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:08.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:08.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:08.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:08.206][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:08.207][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:08.208][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:08.209][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:08.210][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:08.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:08.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:08.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:08.214][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:08.215][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:08.215][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:08.216][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:08.218][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:08.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:08.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:08.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:08.221][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:08.222][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:08.223][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:08.224][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:08.225][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:08.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:08.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:08.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:08.229][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:08.230][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:08.231][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:08.232][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:08.233][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:08.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:08.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:08.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:08.237][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:08.238][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:08.239][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:08.240][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:08.241][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-26 16:02:08.242][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:08.243][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:08.243][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:08.245][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-26 16:02:08.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:08.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:08.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:08.248][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:08.249][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:08.250][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:08.251][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:08.252][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:08.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:08.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:08.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:08.256][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:08.257][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:08.258][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:08.259][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:08.260][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:08.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:08.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:08.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:08.264][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-26 16:02:08.265][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:08.266][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:08.267][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:08.268][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-26 16:02:08.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:08.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:08.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:08.280][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:08.282][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:08.283][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:08.283][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:08.285][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:08.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:08.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:08.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:08.288][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:08.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:08.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:08.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:08.292][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:08.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:08.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:08.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:08.296][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:08.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:08.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:08.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:08.299][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:08.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:08.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:08.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:08.303][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:08.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:08.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:08.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:08.306][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:08.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:08.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:08.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:08.310][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:08.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:08.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:08.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:08.314][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:08.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:08.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:08.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:08.317][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:08.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:08.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:08.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:08.321][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:08.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:08.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:08.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:08.325][self$createEntryFromContent] Accession numbers: 190762.
biodb.TRACE[2025-07-26 16:02:08.326][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:08.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:08.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:08.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:08.329][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:08.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:08.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:08.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:08.333][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:08.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:08.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:08.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:08.336][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:08.337][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:08.338][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:08.342][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:08.343][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:08.344][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:08.344][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-26 16:02:08.345][private$loadEntries] Creating entries from ids [1]: "193176".
biodb.DEBUG[2025-07-26 16:02:08.346][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-26 16:02:08.348][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-26 16:02:08.351][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/193176.xml.
biodb.DEBUG[2025-07-26 16:02:08.352][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-26 16:02:08.353][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-26 16:02:08.354][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-26 16:02:08.356][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:08.356][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:08.357][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:08.361][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:08.362][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:08.363][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:08.364][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:08.366][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:08.367][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:08.367][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:08.368][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:08.369][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:08.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:08.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:08.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:08.373][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:08.374][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:08.375][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:08.376][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:08.377][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:08.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:08.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:08.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:08.381][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:08.382][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:08.383][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:08.384][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:08.385][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:08.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:08.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:08.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:08.389][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:08.390][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:08.391][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:08.391][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:08.393][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:08.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:08.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:08.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:08.396][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:08.397][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:08.398][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:08.399][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:08.400][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:08.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:08.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:08.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:08.404][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:08.405][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:08.406][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:08.407][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:08.408][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-26 16:02:08.409][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:08.410][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:08.411][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:08.412][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-26 16:02:08.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:08.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:08.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:08.415][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:08.416][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:08.417][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:08.418][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:08.419][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:08.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:08.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:08.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:08.423][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:08.424][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:08.425][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:08.426][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:08.427][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:08.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:08.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:08.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:08.431][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-26 16:02:08.432][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:08.433][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:08.433][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:08.435][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-26 16:02:08.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:08.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:08.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:08.438][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:08.439][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:08.440][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:08.441][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:08.442][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:08.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:08.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:08.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:08.446][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:08.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:08.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:08.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:08.450][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:08.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:08.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:08.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:08.453][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:08.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:08.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:08.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:08.457][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:08.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:08.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:08.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:08.461][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:08.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:08.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:08.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:08.464][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:08.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:08.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:08.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:08.468][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:08.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:08.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:08.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:08.472][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:08.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:08.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:08.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:08.475][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:08.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:08.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:08.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:08.479][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:08.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:08.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:08.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:08.483][self$createEntryFromContent] Accession numbers: 193176.
biodb.TRACE[2025-07-26 16:02:08.484][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:08.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:08.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:08.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:08.487][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:08.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:08.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:08.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:08.491][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:08.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:08.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:08.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:08.495][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:08.496][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:08.497][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:08.501][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:08.501][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:08.502][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:08.503][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-26 16:02:08.504][private$loadEntries] Creating entries from ids [1]: "196395".
biodb.DEBUG[2025-07-26 16:02:08.505][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-26 16:02:08.506][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-26 16:02:08.510][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/196395.xml.
biodb.DEBUG[2025-07-26 16:02:08.511][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-26 16:02:08.512][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-26 16:02:08.513][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-26 16:02:08.514][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:08.515][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:08.516][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:08.520][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:08.521][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:08.521][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:08.522][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:08.525][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:08.526][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:08.526][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:08.527][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:08.528][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:08.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:08.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:08.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:08.537][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:08.538][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:08.539][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:08.540][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:08.541][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:08.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:08.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:08.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:08.545][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:08.546][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:08.547][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:08.548][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:08.549][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:08.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:08.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:08.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:08.553][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:08.554][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:08.554][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:08.555][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:08.556][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:08.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:08.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:08.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:08.560][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:08.561][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:08.562][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:08.563][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:08.564][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:08.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:08.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:08.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:08.568][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:08.568][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:08.569][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:08.570][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:08.571][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-26 16:02:08.572][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:08.573][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:08.574][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:08.575][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-26 16:02:08.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:08.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:08.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:08.579][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:08.580][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:08.581][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:08.581][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:08.582][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:08.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:08.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:08.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:08.586][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:08.587][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:08.588][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:08.589][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:08.590][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:08.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:08.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:08.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:08.594][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-26 16:02:08.595][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:08.596][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:08.596][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:08.597][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-26 16:02:08.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:08.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:08.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:08.601][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:08.602][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:08.603][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:08.604][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:08.605][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:08.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:08.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:08.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:08.609][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:08.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:08.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:08.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:08.612][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:08.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:08.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:08.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:08.616][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:08.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:08.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:08.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:08.620][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:08.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:08.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:08.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:08.623][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:08.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:08.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:08.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:08.627][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:08.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:08.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:08.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:08.630][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:08.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:08.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:08.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:08.634][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:08.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:08.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:08.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:08.638][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:08.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:08.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:08.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:08.642][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:08.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:08.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:08.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:08.645][self$createEntryFromContent] Accession numbers: 196395.
biodb.TRACE[2025-07-26 16:02:08.646][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:08.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:08.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:08.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:08.650][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:08.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:08.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:08.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:08.654][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:08.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:08.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:08.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:08.657][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:08.658][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:08.659][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:08.663][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:08.664][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:08.665][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:08.666][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:08.667][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:08.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:08.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:08.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:08.670][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:08.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:08.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:08.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:08.674][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:08.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:08.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:08.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:08.678][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-07-26 16:02:08.679][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:08.680][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:08.681][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:08.685][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:08.686][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:08.687][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:08.687][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:08.688][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:08.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:08.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:08.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:08.692][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:08.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:08.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:08.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:08.696][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:08.697][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-07-26 16:02:08.698][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-26 16:02:08.698][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-26 16:02:08.699][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:08.700][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:08.701][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:08.702][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:08.703][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:08.704][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:08.705][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:08.706][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:08.707][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:08.707][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:08.708][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:08.709][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:08.710][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:08.711][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:08.712][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:08.713][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-26 16:02:08.714][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:08.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:08.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:08.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:08.718][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:08.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:08.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:08.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:08.721][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:08.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:08.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:08.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:08.725][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [7799].
biodb.DEBUG[2025-07-26 16:02:08.726][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:08.727][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:08.728][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:08.732][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:08.733][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:08.734][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:08.734][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:08.735][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:08.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:08.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:08.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:08.739][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:08.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:08.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:08.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:08.743][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:08.744][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-07-26 16:02:08.745][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-26 16:02:08.745][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-26 16:02:08.746][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:08.747][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:08.748][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:08.749][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:08.750][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:08.751][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:08.752][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:08.753][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:08.754][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:08.754][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:08.755][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:08.756][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:08.757][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:08.758][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:08.759][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:08.760][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-26 16:02:08.761][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:08.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:08.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:08.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:08.765][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:08.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:08.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:08.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:08.768][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:08.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:08.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:08.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:08.772][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [71954].
biodb.DEBUG[2025-07-26 16:02:08.773][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:08.774][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:08.775][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:08.783][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:08.784][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:08.785][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:08.786][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:08.788][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:08.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:08.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:08.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:08.791][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:08.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:08.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:08.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:08.795][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:08.796][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-07-26 16:02:08.797][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-26 16:02:08.797][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-26 16:02:08.798][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:08.799][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:08.800][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:08.801][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:08.802][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:08.803][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:08.804][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:08.805][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:08.806][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:08.806][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:08.807][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:08.808][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:08.809][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:08.810][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:08.811][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:08.812][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-26 16:02:08.813][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:08.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:08.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:08.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:08.816][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:08.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:08.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:08.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:08.820][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:08.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:08.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:08.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:08.824][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [197612].
biodb.DEBUG[2025-07-26 16:02:08.825][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-07-26 16:02:08.826][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-07-26 16:02:08.842][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:08.843][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:08.844][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:08.848][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:08.848][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:08.849][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:08.850][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-07-26 16:02:08.853][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-07-26 16:02:08.855][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-07-26 16:02:08.861][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/b616afd034ed5d04cbb32f1e92c778e7.content.
sched.DEBUG[2025-07-26 16:02:08.862][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-07-26 16:02:08.866][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:08.867][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:08.868][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:08.872][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:08.873][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:08.874][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:08.874][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:08.875][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:08.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:08.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:08.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:08.879][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:08.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:08.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:08.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:08.883][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:08.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:08.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:08.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:08.887][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:08.887][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:08.888][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:08.892][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:08.893][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:08.894][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:08.895][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:08.896][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:08.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:08.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:08.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:08.900][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:08.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:08.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:08.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:08.903][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:08.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:08.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:08.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:08.907][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:08.908][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:08.909][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:08.913][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:08.914][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:08.914][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:08.915][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:08.916][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:08.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:08.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:08.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:08.920][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:08.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:08.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:08.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:08.924][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:08.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:08.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:08.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:08.927][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:08.928][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:08.929][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:08.933][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:08.934][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:08.935][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:08.936][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:08.937][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:08.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:08.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:08.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:08.940][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:08.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:08.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:08.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:08.944][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:08.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:08.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:08.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:08.948][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-07-26 16:02:08.949][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:08.950][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:08.951][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:08.955][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:08.956][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:08.956][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:08.957][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:08.958][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:08.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:08.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:08.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:08.962][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:08.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:08.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:08.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:08.966][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:08.967][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-07-26 16:02:08.968][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-26 16:02:08.968][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-26 16:02:08.969][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:08.970][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:08.971][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:08.972][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:08.973][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:08.974][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:08.975][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:08.976][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:08.977][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:08.978][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:08.978][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:08.979][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:08.980][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:08.981][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:08.982][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:08.983][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-26 16:02:08.984][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:08.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:08.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:08.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:08.988][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:08.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:08.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:08.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:08.991][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:08.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:08.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:08.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:08.995][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [3014].
biodb.DEBUG[2025-07-26 16:02:08.996][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:08.997][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:08.998][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:09.002][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:09.003][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:09.004][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:09.004][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:09.005][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:09.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:09.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:09.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:09.009][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:09.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:09.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:09.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:09.013][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:09.014][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-07-26 16:02:09.015][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-26 16:02:09.015][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-26 16:02:09.016][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:09.017][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:09.018][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:09.019][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:09.020][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:09.021][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:09.022][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:09.023][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:09.024][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:09.024][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:09.025][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:09.026][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:09.027][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:09.028][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:09.029][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:09.030][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-26 16:02:09.031][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:09.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:09.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:09.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:09.040][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:09.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:09.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:09.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:09.044][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:09.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:09.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:09.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:09.048][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [8021].
biodb.DEBUG[2025-07-26 16:02:09.049][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:09.050][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:09.051][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:09.055][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:09.056][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:09.058][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:09.058][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:09.060][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:09.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:09.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:09.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:09.063][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:09.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:09.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:09.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:09.067][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:09.068][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-07-26 16:02:09.069][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-26 16:02:09.069][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-26 16:02:09.070][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:09.071][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:09.072][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:09.073][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:09.074][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:09.075][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:09.076][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:09.077][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:09.077][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:09.078][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:09.079][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:09.080][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:09.081][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:09.082][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:09.083][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:09.084][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-26 16:02:09.085][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:09.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:09.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:09.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:09.088][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:09.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:09.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:09.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:09.092][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:09.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:09.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:09.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:09.096][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [30382].
biodb.DEBUG[2025-07-26 16:02:09.097][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-07-26 16:02:09.097][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-07-26 16:02:09.099][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:09.100][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:09.101][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:09.105][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:09.106][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:09.107][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:09.107][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-07-26 16:02:09.110][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.4*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-07-26 16:02:09.112][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-07-26 16:02:09.117][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/4da83335ec00090f05f0a5128074d1f6.content.
sched.DEBUG[2025-07-26 16:02:09.118][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-07-26 16:02:09.121][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:09.122][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:09.123][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:09.127][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:09.127][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:09.128][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:09.129][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:09.130][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:09.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:09.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:09.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:09.134][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:09.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:09.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:09.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:09.137][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:09.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:09.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:09.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:09.141][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:09.142][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:09.143][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:09.147][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:09.147][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:09.148][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:09.149][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:09.150][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:09.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:09.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:09.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:09.154][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:09.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:09.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:09.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:09.157][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:09.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:09.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:09.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:09.161][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:09.162][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:09.163][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:09.167][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:09.168][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:09.168][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:09.169][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:09.170][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:09.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:09.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:09.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:09.174][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:09.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:09.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:09.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:09.178][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:09.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:09.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:09.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:09.181][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:09.182][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:09.183][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:09.187][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:09.188][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:09.189][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:09.189][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:09.190][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:09.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:09.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:09.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:09.194][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:09.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:09.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:09.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:09.198][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:09.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:09.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:09.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:09.202][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:09.202][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:09.203][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:09.207][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:09.208][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:09.209][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:09.210][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:09.211][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:09.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:09.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:09.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:09.215][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:09.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:09.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:09.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:09.218][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:09.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:09.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:09.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:09.222][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:09.223][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:09.224][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:09.228][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:09.229][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:09.229][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:09.230][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:09.231][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:09.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:09.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:09.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:09.235][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:09.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:09.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:09.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:09.239][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:09.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:09.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:09.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:09.242][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:09.243][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:09.244][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:09.248][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:09.249][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:09.250][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:09.251][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:09.252][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:09.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:09.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:09.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:09.255][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:09.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:09.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:09.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:09.259][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:09.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:09.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:09.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:09.263][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-07-26 16:02:09.265][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:09.265][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:09.266][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:09.270][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:09.271][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:09.272][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:09.273][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:09.274][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:09.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:09.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:09.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:09.277][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:09.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:09.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:09.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:09.281][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:09.282][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-07-26 16:02:09.283][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-26 16:02:09.284][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-26 16:02:09.285][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:09.286][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:09.287][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:09.292][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:09.293][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:09.294][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:09.295][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:09.296][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:09.297][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:09.298][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:09.299][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:09.300][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:09.301][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:09.302][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:09.303][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:09.304][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-26 16:02:09.305][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:09.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:09.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:09.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:09.308][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:09.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:09.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:09.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:09.312][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:09.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:09.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:09.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:09.316][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [65530].
biodb.DEBUG[2025-07-26 16:02:09.317][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:09.318][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:09.318][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:09.322][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:09.323][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:09.324][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:09.325][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:09.326][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:09.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:09.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:09.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:09.330][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:09.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:09.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:09.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:09.333][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:09.334][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-07-26 16:02:09.335][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-26 16:02:09.336][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-26 16:02:09.337][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:09.337][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:09.338][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:09.339][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:09.340][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:09.341][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:09.342][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:09.343][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:09.344][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:09.345][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:09.346][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:09.346][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:09.347][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:09.348][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:09.349][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:09.350][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-26 16:02:09.351][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:09.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:09.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:09.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:09.354][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:09.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:09.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:09.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:09.358][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:09.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:09.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:09.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:09.362][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [90204].
biodb.DEBUG[2025-07-26 16:02:09.363][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:09.364][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:09.365][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:09.368][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:09.369][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:09.370][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:09.371][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:09.372][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:09.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:09.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:09.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:09.376][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:09.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:09.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:09.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:09.379][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:09.380][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-07-26 16:02:09.381][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-26 16:02:09.382][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-26 16:02:09.383][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:09.384][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:09.385][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:09.385][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:09.386][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:09.387][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:09.388][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:09.389][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:09.390][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:09.391][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:09.392][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:09.393][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:09.394][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:09.395][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:09.395][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:09.396][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-26 16:02:09.397][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:09.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:09.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:09.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:09.401][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:09.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:09.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:09.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:09.405][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:09.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:09.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:09.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:09.409][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [132793].
biodb.DEBUG[2025-07-26 16:02:09.409][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-07-26 16:02:09.410][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-07-26 16:02:09.412][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:09.413][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:09.414][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:09.418][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:09.418][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:09.419][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:09.420][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-07-26 16:02:09.423][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.1*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-07-26 16:02:09.425][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-07-26 16:02:09.427][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/d4eeadefe2fd6c7a45a5c47263c29105.content.
sched.DEBUG[2025-07-26 16:02:09.428][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-07-26 16:02:09.430][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:09.431][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:09.431][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:09.435][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:09.436][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:09.437][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:09.438][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:09.439][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:09.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:09.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:09.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:09.443][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:09.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:09.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:09.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:09.446][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:09.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:09.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:09.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:09.450][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:09.451][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:09.452][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:09.456][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:09.456][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:09.457][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:09.458][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:09.459][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:09.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:09.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:09.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:09.463][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:09.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:09.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:09.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:09.466][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:09.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:09.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:09.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
sched.DEBUG[2025-07-26 16:02:09.471][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.2*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-07-26 16:02:09.473][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-07-26 16:02:09.476][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/8a1fe476d9f07138803c04b6da6259b3.content.
sched.DEBUG[2025-07-26 16:02:09.476][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-07-26 16:02:09.479][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:09.479][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:09.480][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:09.484][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:09.485][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:09.486][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:09.487][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:09.488][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:09.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:09.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:09.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:09.492][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:09.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:09.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:09.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:09.495][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:09.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:09.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:09.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:09.499][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:09.500][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:09.501][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:09.505][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:09.506][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:09.506][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:09.507][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:09.508][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:09.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:09.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:09.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:09.512][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:09.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:09.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:09.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:09.516][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:09.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:09.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:09.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:09.519][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:09.520][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:09.521][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:09.525][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:09.526][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:09.527][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:09.527][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:09.528][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:09.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:09.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:09.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:09.532][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:09.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:09.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:09.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:09.536][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:09.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:09.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:09.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:09.545][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-07-26 16:02:09.546][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:09.547][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:09.548][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:09.552][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:09.553][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:09.554][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:09.555][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:09.556][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:09.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:09.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:09.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:09.560][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:09.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:09.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:09.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:09.564][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:09.565][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-07-26 16:02:09.566][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-26 16:02:09.567][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-26 16:02:09.567][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:09.568][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:09.569][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:09.570][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:09.571][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:09.572][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:09.573][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:09.574][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:09.575][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:09.576][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:09.577][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:09.578][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:09.579][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:09.580][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:09.581][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:09.582][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-26 16:02:09.583][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:09.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:09.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:09.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:09.586][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:09.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:09.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:09.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:09.590][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:09.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:09.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:09.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:09.594][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [51836].
biodb.DEBUG[2025-07-26 16:02:09.595][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:09.596][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:09.597][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:09.601][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:09.601][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:09.602][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:09.603][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:09.604][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:09.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:09.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:09.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:09.608][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:09.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:09.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:09.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:09.611][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:09.612][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-07-26 16:02:09.613][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-26 16:02:09.614][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-26 16:02:09.615][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:09.616][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:09.617][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:09.618][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:09.618][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:09.619][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:09.620][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:09.621][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:09.622][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:09.623][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:09.624][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:09.625][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:09.626][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:09.626][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:09.627][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:09.628][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-26 16:02:09.629][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:09.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:09.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:09.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:09.633][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:09.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:09.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:09.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:09.636][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:09.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:09.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:09.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:09.640][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [51837].
biodb.DEBUG[2025-07-26 16:02:09.641][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:09.642][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:09.643][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:09.647][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:09.648][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:09.648][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:09.649][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:09.650][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:09.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:09.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:09.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:09.654][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:09.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:09.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:09.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:09.658][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:09.659][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-07-26 16:02:09.659][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-26 16:02:09.660][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-26 16:02:09.661][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:09.662][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:09.663][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:09.664][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:09.665][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:09.666][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:09.667][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:09.668][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:09.668][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:09.669][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:09.670][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:09.671][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:09.672][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:09.673][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:09.674][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:09.675][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-26 16:02:09.676][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:09.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:09.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:09.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:09.679][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:09.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:09.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:09.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:09.683][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:09.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:09.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:09.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:09.687][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [132205].
biodb.DEBUG[2025-07-26 16:02:09.688][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-07-26 16:02:09.689][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-07-26 16:02:09.706][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:09.706][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:09.707][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:09.711][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:09.712][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:09.713][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:09.713][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-07-26 16:02:09.716][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-07-26 16:02:09.718][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-07-26 16:02:09.720][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/8fc54eee7e982ce554bee8000d8203f7.content.
sched.DEBUG[2025-07-26 16:02:09.721][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-07-26 16:02:09.723][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:09.724][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:09.725][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:09.728][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:09.729][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:09.730][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:09.731][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:09.732][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:09.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:09.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:09.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:09.736][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:09.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:09.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:09.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:09.739][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:09.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:09.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:09.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
sched.DEBUG[2025-07-26 16:02:09.744][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-07-26 16:02:09.746][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-07-26 16:02:09.748][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/6def615835d7c1dfccd5a5f135bd2f9d.content.
sched.DEBUG[2025-07-26 16:02:09.749][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-07-26 16:02:09.751][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:09.752][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:09.752][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:09.756][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:09.757][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:09.758][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:09.759][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:09.760][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:09.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:09.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:09.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:09.763][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:09.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:09.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:09.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:09.767][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:09.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:09.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:09.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:09.771][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:09.772][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:09.772][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:09.776][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:09.777][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:09.778][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:09.779][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:09.780][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:09.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:09.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:09.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:09.783][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:09.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:09.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:09.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:09.787][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:09.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:09.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:09.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:09.796][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-07-26 16:02:09.797][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:09.798][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:09.799][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:09.803][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:09.804][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:09.805][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:09.806][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:09.807][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:09.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:09.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:09.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:09.810][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:09.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:09.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:09.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:09.814][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:09.815][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-07-26 16:02:09.815][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-26 16:02:09.816][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-26 16:02:09.817][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:09.818][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:09.819][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:09.820][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:09.821][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:09.822][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:09.823][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:09.824][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:09.824][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:09.825][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:09.826][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:09.827][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:09.828][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:09.829][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:09.830][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:09.831][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-26 16:02:09.832][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:09.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:09.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:09.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:09.835][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:09.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:09.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:09.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:09.839][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:09.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:09.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:09.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:09.843][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [192288].
biodb.DEBUG[2025-07-26 16:02:09.844][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:09.844][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:09.845][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:09.849][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:09.850][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:09.850][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:09.851][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:09.852][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:09.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:09.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:09.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:09.856][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:09.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:09.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:09.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:09.860][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:09.860][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-07-26 16:02:09.861][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-26 16:02:09.862][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-26 16:02:09.863][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:09.864][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:09.865][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:09.866][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:09.867][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:09.867][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:09.868][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:09.869][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:09.870][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:09.871][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:09.872][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:09.873][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:09.874][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:09.875][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:09.876][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:09.876][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-26 16:02:09.877][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:09.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:09.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:09.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:09.881][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:09.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:09.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:09.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:09.885][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:09.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:09.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:09.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:09.889][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2025-07-26 16:02:09.890][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:09.890][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:09.891][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:09.895][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:09.896][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:09.897][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:09.898][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:09.899][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:09.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:09.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:09.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:09.902][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:09.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:09.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:09.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:09.906][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:09.907][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-07-26 16:02:09.908][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-26 16:02:09.909][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-26 16:02:09.910][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:09.911][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:09.911][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:09.912][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:09.913][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:09.914][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:09.915][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:09.916][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:09.917][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:09.918][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:09.919][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:09.920][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:09.921][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:09.921][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:09.922][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:09.923][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-26 16:02:09.924][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:09.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:09.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:09.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:09.928][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:09.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:09.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:09.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:09.931][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:09.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:09.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:09.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:09.935][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [209892].
biodb.DEBUG[2025-07-26 16:02:09.936][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-07-26 16:02:09.937][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-07-26 16:02:09.939][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:09.940][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:09.941][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:09.945][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:09.946][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:09.947][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:09.947][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-07-26 16:02:09.950][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-07-26 16:02:09.952][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-07-26 16:02:09.954][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/013adb879cee6d4257067df9ba0a8c7b.content.
sched.DEBUG[2025-07-26 16:02:09.955][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-07-26 16:02:09.957][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:09.958][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:09.959][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:09.963][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:09.964][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:09.964][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:09.965][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:09.966][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:09.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:09.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:09.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:09.970][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:09.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:09.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:09.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:09.974][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:09.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:09.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:09.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:09.977][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:09.978][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:09.979][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:09.983][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:09.984][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:09.985][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:09.986][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:09.987][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:09.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:09.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:09.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:09.990][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:09.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:09.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:09.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:09.994][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:09.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:09.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:09.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
sched.DEBUG[2025-07-26 16:02:09.998][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.63*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-07-26 16:02:10.001][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-07-26 16:02:10.004][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/d37a10a1f6afae785eb4d1943c254641.content.
sched.DEBUG[2025-07-26 16:02:10.005][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-07-26 16:02:10.007][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:10.008][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:10.009][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:10.013][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:10.014][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:10.014][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:10.015][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:10.016][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:10.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:10.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:10.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:10.020][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:10.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:10.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:10.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:10.024][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:10.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:10.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:10.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:10.027][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:10.028][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:10.029][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:10.033][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:10.034][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:10.035][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:10.035][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:10.036][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:10.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:10.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:10.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:10.045][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:10.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:10.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:10.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:10.049][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:10.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:10.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:10.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:10.053][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:10.054][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:10.055][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:10.059][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:10.060][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:10.061][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:10.062][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:10.063][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:10.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:10.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:10.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:10.067][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:10.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:10.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:10.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:10.071][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:10.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:10.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:10.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:10.074][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-07-26 16:02:10.076][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:10.077][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:10.077][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:10.081][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:10.082][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:10.083][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:10.084][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:10.085][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:10.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:10.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:10.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:10.088][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:10.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:10.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:10.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:10.092][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:10.093][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-07-26 16:02:10.094][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-26 16:02:10.095][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-26 16:02:10.096][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:10.096][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:10.097][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:10.098][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:10.099][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:10.100][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:10.101][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:10.102][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:10.103][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:10.104][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:10.105][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:10.105][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:10.106][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:10.107][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:10.108][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:10.109][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-26 16:02:10.110][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:10.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:10.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:10.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:10.114][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:10.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:10.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:10.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:10.117][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:10.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:10.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:10.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:10.121][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2025-07-26 16:02:10.122][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:10.123][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:10.124][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:10.128][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:10.129][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:10.130][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:10.130][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:10.131][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:10.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:10.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:10.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:10.135][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:10.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:10.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:10.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:10.139][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:10.140][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-07-26 16:02:10.141][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-26 16:02:10.141][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-26 16:02:10.142][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:10.143][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:10.144][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:10.145][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:10.146][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:10.147][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:10.148][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:10.149][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:10.150][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:10.151][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:10.151][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:10.152][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:10.153][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:10.154][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:10.155][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:10.156][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-26 16:02:10.157][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:10.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:10.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:10.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:10.161][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:10.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:10.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:10.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:10.164][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:10.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:10.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:10.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:10.168][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [16587].
biodb.DEBUG[2025-07-26 16:02:10.169][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:10.170][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:10.171][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:10.175][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:10.176][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:10.177][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:10.178][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:10.179][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:10.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:10.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:10.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:10.183][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:10.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:10.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:10.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:10.186][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:10.187][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-07-26 16:02:10.188][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-26 16:02:10.189][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-26 16:02:10.190][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:10.191][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:10.192][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:10.192][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:10.193][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:10.194][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:10.195][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:10.196][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:10.197][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:10.198][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:10.199][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:10.200][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:10.201][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:10.202][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:10.203][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:10.203][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-26 16:02:10.204][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:10.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:10.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:10.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:10.208][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:10.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:10.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:10.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:10.212][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:10.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:10.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:10.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:10.216][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [19804].
biodb.DEBUG[2025-07-26 16:02:10.217][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-07-26 16:02:10.218][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-07-26 16:02:10.220][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:10.220][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:10.221][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:10.225][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:10.226][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:10.227][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:10.228][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-07-26 16:02:10.230][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-07-26 16:02:10.233][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-07-26 16:02:10.235][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/618204bc3e9a685033db1d9be9d78d44.content.
sched.DEBUG[2025-07-26 16:02:10.236][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-07-26 16:02:10.238][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:10.239][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:10.240][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:10.244][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:10.245][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:10.245][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:10.246][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:10.247][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:10.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:10.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:10.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:10.251][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:10.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:10.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:10.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:10.255][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:10.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:10.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:10.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:10.258][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:10.259][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:10.260][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:10.264][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:10.265][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:10.266][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:10.266][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:10.268][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:10.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:10.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:10.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:10.271][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:10.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:10.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:10.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:10.275][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:10.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:10.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:10.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:10.279][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:10.279][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:10.280][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:10.284][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:10.285][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:10.286][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:10.287][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:10.288][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:10.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:10.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:10.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:10.296][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:10.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:10.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:10.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:10.300][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:10.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:10.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:10.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:10.304][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:10.305][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:10.306][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:10.310][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:10.310][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:10.311][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:10.312][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:10.313][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:10.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:10.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:10.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:10.317][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:10.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:10.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:10.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:10.320][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:10.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:10.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:10.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:10.324][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:10.325][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:10.326][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:10.329][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:10.330][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:10.331][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:10.332][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:10.333][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:10.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:10.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:10.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:10.336][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:10.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:10.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:10.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:10.340][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:10.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:10.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:10.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:10.344][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:10.344][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:10.345][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:10.349][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:10.350][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:10.351][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:10.352][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:10.353][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:10.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:10.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:10.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:10.356][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:10.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:10.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:10.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:10.360][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:10.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:10.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:10.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:10.363][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:10.364][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:10.365][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:10.369][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:10.370][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:10.371][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:10.371][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:10.372][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:10.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:10.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:10.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:10.376][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:10.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:10.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:10.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:10.380][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:10.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:10.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:10.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:10.383][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:10.384][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:10.385][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:10.389][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:10.390][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:10.390][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:10.391][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:10.392][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:10.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:10.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:10.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:10.396][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:10.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:10.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:10.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:10.400][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:10.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:10.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:10.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
sched.DEBUG[2025-07-26 16:02:10.404][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-07-26 16:02:10.406][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-07-26 16:02:10.408][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/e0540b0a9d3ba75ce1522ce23f76319e.content.
sched.DEBUG[2025-07-26 16:02:10.409][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-07-26 16:02:10.411][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:10.412][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:10.413][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:10.417][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:10.418][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:10.419][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:10.419][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:10.420][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:10.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:10.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:10.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:10.424][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:10.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:10.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:10.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:10.428][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:10.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:10.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:10.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:10.432][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:10.432][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:10.433][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:10.437][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:10.438][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:10.439][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:10.439][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:10.440][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:10.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:10.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:10.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:10.444][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:10.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:10.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:10.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:10.448][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:10.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:10.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:10.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:10.452][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:10.452][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:10.453][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:10.457][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:10.458][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:10.459][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:10.459][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:10.460][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:10.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:10.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:10.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:10.464][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:10.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:10.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:10.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:10.468][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:10.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:10.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:10.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:10.472][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-07-26 16:02:10.473][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:10.474][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:10.475][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:10.478][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:10.479][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:10.480][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:10.481][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:10.482][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:10.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:10.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:10.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:10.486][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:10.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:10.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:10.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:10.489][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:10.490][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-07-26 16:02:10.491][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-26 16:02:10.492][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-26 16:02:10.493][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:10.494][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:10.495][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:10.496][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:10.496][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:10.497][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:10.498][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:10.499][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:10.500][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:10.501][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:10.502][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:10.503][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:10.504][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:10.505][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:10.505][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:10.506][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-26 16:02:10.507][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:10.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:10.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:10.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:10.511][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:10.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:10.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:10.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:10.515][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:10.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:10.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:10.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:10.519][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [7799].
biodb.DEBUG[2025-07-26 16:02:10.520][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:10.520][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:10.521][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:10.525][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:10.526][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:10.527][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:10.528][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:10.529][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:10.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:10.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:10.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:10.532][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:10.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:10.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:10.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:10.536][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:10.537][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-07-26 16:02:10.542][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-26 16:02:10.543][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-26 16:02:10.545][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:10.546][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:10.547][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:10.548][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:10.548][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:10.549][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:10.550][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:10.551][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:10.552][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:10.553][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:10.554][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:10.555][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:10.556][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:10.557][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:10.558][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:10.558][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-26 16:02:10.559][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:10.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:10.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:10.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:10.563][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:10.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:10.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:10.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:10.567][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:10.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:10.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:10.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:10.570][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [71954].
biodb.DEBUG[2025-07-26 16:02:10.571][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:10.572][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:10.573][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:10.577][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:10.578][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:10.578][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:10.579][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:10.580][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:10.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:10.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:10.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:10.584][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:10.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:10.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:10.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:10.587][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:10.588][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-07-26 16:02:10.589][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-26 16:02:10.590][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-26 16:02:10.591][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:10.592][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:10.593][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:10.594][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:10.595][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:10.595][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:10.596][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:10.597][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:10.598][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:10.599][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:10.600][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:10.601][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:10.602][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:10.603][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:10.603][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:10.604][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-26 16:02:10.605][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:10.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:10.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:10.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:10.609][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:10.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:10.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:10.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:10.612][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:10.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:10.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:10.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:10.616][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [197612].
biodb.DEBUG[2025-07-26 16:02:10.617][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-07-26 16:02:10.618][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-07-26 16:02:10.634][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:10.635][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:10.636][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:10.639][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:10.640][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:10.641][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:10.642][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-07-26 16:02:10.645][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.7*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-07-26 16:02:10.647][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-07-26 16:02:10.650][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/52d6fe8916b2b36c38f3e0a454a0ac24.content.
sched.DEBUG[2025-07-26 16:02:10.651][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-07-26 16:02:10.653][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:10.654][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:10.655][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:10.658][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:10.659][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:10.660][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:10.661][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:10.662][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:10.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:10.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:10.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:10.665][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:10.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:10.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:10.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:10.669][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:10.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:10.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:10.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:10.673][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:10.674][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:10.675][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:10.678][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:10.679][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:10.680][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:10.681][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:10.682][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:10.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:10.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:10.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:10.685][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:10.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:10.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:10.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:10.689][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:10.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:10.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:10.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:10.693][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:10.694][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:10.694][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:10.698][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:10.699][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:10.700][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:10.701][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:10.702][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:10.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:10.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:10.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:10.705][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:10.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:10.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:10.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:10.709][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:10.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:10.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:10.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:10.713][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:10.713][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:10.714][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:10.718][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:10.719][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:10.720][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:10.720][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:10.721][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:10.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:10.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:10.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:10.725][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:10.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:10.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:10.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:10.729][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:10.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:10.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:10.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:10.733][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:10.733][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:10.734][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:10.738][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:10.739][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:10.740][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:10.740][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:10.742][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:10.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:10.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:10.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:10.745][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:10.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:10.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:10.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:10.749][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:10.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:10.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:10.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:10.753][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:10.754][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:10.754][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:10.758][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:10.759][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:10.760][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:10.761][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:10.762][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:10.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:10.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:10.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:10.765][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:10.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:10.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:10.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:10.769][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:10.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:10.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:10.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:10.773][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-07-26 16:02:10.774][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:10.775][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:10.776][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:10.780][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:10.781][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:10.782][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:10.782][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:10.788][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:10.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:10.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:10.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:10.793][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:10.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:10.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:10.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:10.796][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:10.797][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-07-26 16:02:10.798][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-26 16:02:10.799][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-26 16:02:10.800][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:10.801][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:10.802][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:10.803][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:10.804][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:10.804][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:10.805][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:10.806][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:10.807][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:10.808][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:10.809][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:10.810][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:10.811][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:10.812][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:10.813][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:10.813][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-26 16:02:10.814][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:10.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:10.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:10.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:10.818][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:10.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:10.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:10.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:10.822][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:10.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:10.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:10.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:10.826][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2025-07-26 16:02:10.827][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:10.827][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:10.828][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:10.832][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:10.833][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:10.834][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:10.835][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:10.836][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:10.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:10.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:10.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:10.840][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:10.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:10.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:10.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:10.843][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:10.844][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-07-26 16:02:10.845][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-26 16:02:10.846][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-26 16:02:10.847][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:10.848][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:10.849][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:10.849][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:10.850][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:10.851][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:10.852][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:10.853][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:10.854][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:10.855][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:10.856][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:10.857][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:10.857][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:10.858][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:10.859][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:10.860][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-26 16:02:10.861][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:10.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:10.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:10.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:10.865][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:10.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:10.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:10.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:10.868][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:10.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:10.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:10.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:10.872][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [28243].
biodb.DEBUG[2025-07-26 16:02:10.873][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:10.874][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:10.875][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:10.879][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:10.880][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:10.881][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:10.881][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:10.882][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:10.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:10.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:10.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:10.886][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:10.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:10.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:10.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:10.890][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:10.891][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-07-26 16:02:10.892][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-26 16:02:10.892][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-26 16:02:10.893][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:10.894][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:10.895][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:10.896][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:10.897][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:10.898][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:10.899][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:10.900][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:10.901][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:10.902][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:10.902][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:10.903][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:10.904][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:10.905][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:10.906][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:10.907][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-26 16:02:10.908][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:10.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:10.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:10.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:10.912][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:10.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:10.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:10.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:10.915][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:10.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:10.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:10.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:10.919][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [78144].
biodb.DEBUG[2025-07-26 16:02:10.920][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-07-26 16:02:10.921][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-07-26 16:02:10.923][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:10.924][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:10.925][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:10.929][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:10.929][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:10.930][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:10.931][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-07-26 16:02:10.934][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.6*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-07-26 16:02:10.936][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-07-26 16:02:10.942][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/a1f794ee7474001c459ff6d20307d75d.content.
sched.DEBUG[2025-07-26 16:02:10.943][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-07-26 16:02:10.947][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:10.948][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:10.948][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:10.952][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:10.953][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:10.954][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:10.955][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:10.956][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:10.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:10.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:10.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:10.960][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:10.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:10.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:10.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:10.963][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:10.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:10.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:10.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:10.967][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:10.968][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:10.969][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:10.973][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:10.974][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:10.974][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:10.975][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:10.976][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:10.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:10.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:10.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:10.980][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:10.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:10.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:10.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:10.984][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:10.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:10.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:10.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:10.987][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:10.988][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:10.989][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:10.993][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:10.994][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:10.994][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:10.995][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:10.996][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:10.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:10.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:10.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:11.000][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:11.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:11.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:11.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:11.004][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:11.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:11.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:11.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:11.008][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-07-26 16:02:11.009][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:11.010][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:11.011][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:11.014][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:11.015][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:11.016][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:11.017][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:11.018][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:11.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:11.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:11.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:11.022][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:11.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:11.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:11.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:11.025][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:11.026][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-07-26 16:02:11.027][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-26 16:02:11.028][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-26 16:02:11.029][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:11.030][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:11.031][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:11.032][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:11.033][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:11.034][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:11.035][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:11.040][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:11.041][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:11.042][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:11.043][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:11.045][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:11.045][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:11.046][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:11.047][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:11.048][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-26 16:02:11.049][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:11.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:11.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:11.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:11.053][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:11.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:11.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:11.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:11.056][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:11.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:11.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:11.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:11.060][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2025-07-26 16:02:11.061][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:11.062][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:11.063][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:11.067][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:11.068][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:11.068][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:11.069][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:11.070][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:11.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:11.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:11.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:11.074][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:11.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:11.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:11.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:11.078][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:11.078][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-07-26 16:02:11.079][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-26 16:02:11.080][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-26 16:02:11.081][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:11.082][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:11.083][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:11.084][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:11.085][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:11.085][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:11.086][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:11.087][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:11.088][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:11.089][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:11.090][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:11.091][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:11.092][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:11.093][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:11.093][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:11.094][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-26 16:02:11.095][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:11.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:11.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:11.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:11.099][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:11.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:11.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:11.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:11.102][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:11.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:11.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:11.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:11.106][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [16587].
biodb.DEBUG[2025-07-26 16:02:11.107][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:11.108][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:11.109][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:11.113][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:11.114][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:11.114][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:11.115][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:11.116][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:11.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:11.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:11.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:11.120][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:11.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:11.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:11.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:11.124][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:11.124][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-07-26 16:02:11.125][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-26 16:02:11.126][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-26 16:02:11.127][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:11.128][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:11.129][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:11.130][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:11.131][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:11.132][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:11.133][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:11.133][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:11.134][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:11.135][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:11.136][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:11.137][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:11.138][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:11.139][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:11.140][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:11.141][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-26 16:02:11.142][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:11.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:11.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:11.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:11.145][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:11.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:11.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:11.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:11.149][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:11.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:11.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:11.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:11.153][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [19804].
biodb.DEBUG[2025-07-26 16:02:11.154][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-07-26 16:02:11.155][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-07-26 16:02:11.156][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:11.157][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:11.158][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:11.162][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:11.163][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:11.164][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:11.164][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-07-26 16:02:11.167][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.3*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-07-26 16:02:11.169][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-07-26 16:02:11.173][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/fee290bbc11906f18fd9eae3d71c81ab.content.
sched.DEBUG[2025-07-26 16:02:11.174][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-07-26 16:02:11.177][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:11.178][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:11.179][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:11.182][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:11.183][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:11.184][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:11.185][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:11.186][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:11.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:11.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:11.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:11.190][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:11.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:11.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:11.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:11.193][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:11.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:11.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:11.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:11.197][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:11.198][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:11.199][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:11.202][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:11.203][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:11.204][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:11.205][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:11.206][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:11.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:11.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:11.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:11.210][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:11.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:11.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:11.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:11.213][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:11.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:11.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:11.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:11.217][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:11.218][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:11.219][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:11.222][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:11.223][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:11.224][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:11.225][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:11.226][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:11.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:11.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:11.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:11.230][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:11.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:11.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:11.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:11.233][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:11.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:11.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:11.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:11.237][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:11.238][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:11.239][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:11.242][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:11.243][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:11.244][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:11.245][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:11.246][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:11.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:11.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:11.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:11.250][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:11.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:11.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:11.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:11.253][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:11.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:11.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:11.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:11.257][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:11.258][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:11.259][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:11.262][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:11.263][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:11.264][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:11.265][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:11.266][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:11.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:11.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:11.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:11.270][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:11.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:11.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:11.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:11.273][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:11.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:11.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:11.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:11.277][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:11.278][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:11.279][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:11.282][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:11.283][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:11.289][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:11.290][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:11.291][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:11.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:11.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:11.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:11.295][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:11.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:11.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:11.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:11.299][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:11.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:11.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:11.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:11.302][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:11.303][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:11.304][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:11.308][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:11.308][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:11.309][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:11.310][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:11.311][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:11.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:11.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:11.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:11.315][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:11.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:11.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:11.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:11.318][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:11.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:11.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:11.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:11.322][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:11.323][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:11.323][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:11.327][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:11.328][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:11.329][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:11.330][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:11.331][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:11.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:11.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:11.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:11.334][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:11.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:11.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:11.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:11.338][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:11.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:11.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:11.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:11.342][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:11.342][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:11.343][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:11.347][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:11.348][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:11.348][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:11.349][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:11.350][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:11.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:11.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:11.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:11.354][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:11.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:11.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:11.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:11.358][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:11.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:11.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:11.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:11.361][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:11.362][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:11.363][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:11.367][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:11.368][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:11.368][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:11.369][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:11.370][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:11.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:11.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:11.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:11.374][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:11.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:11.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:11.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:11.378][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:11.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:11.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:11.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:11.381][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:11.382][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:11.383][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:11.387][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:11.388][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:11.388][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:11.389][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:11.390][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:11.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:11.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:11.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:11.394][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:11.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:11.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:11.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:11.398][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:11.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:11.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:11.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:11.401][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:11.402][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:11.403][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:11.407][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:11.408][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:11.409][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:11.409][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:11.410][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:11.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:11.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:11.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:11.414][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:11.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:11.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:11.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:11.418][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:11.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:11.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:11.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:11.421][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:11.422][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:11.423][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:11.427][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:11.428][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:11.429][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:11.430][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:11.431][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:11.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:11.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:11.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:11.434][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:11.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:11.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:11.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:11.438][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:11.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:11.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:11.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:11.442][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:11.443][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:11.443][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:11.447][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:11.448][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:11.449][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:11.450][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:11.451][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:11.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:11.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:11.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:11.455][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:11.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:11.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:11.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:11.458][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:11.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:11.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:11.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:11.462][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:11.463][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:11.464][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:11.468][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:11.468][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:11.469][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:11.470][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:11.471][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:11.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:11.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:11.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:11.475][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:11.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:11.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:11.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:11.478][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:11.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:11.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:11.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:11.482][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:11.483][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:11.484][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:11.488][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:11.488][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:11.489][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:11.490][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:11.491][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:11.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:11.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:11.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:11.495][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:11.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:11.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:11.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:11.498][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:11.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:11.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:11.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:11.502][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:11.503][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:11.504][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:11.507][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:11.508][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:11.509][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:11.510][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:11.511][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:11.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:11.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:11.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:11.515][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:11.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:11.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:11.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:11.518][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:11.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:11.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:11.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:11.522][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:11.523][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:11.524][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:11.527][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:11.528][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:11.534][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:11.535][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:11.536][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:11.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:11.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:11.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:11.540][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:11.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:11.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:11.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:11.543][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:11.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:11.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:11.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:11.547][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:11.548][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:11.549][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:11.552][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:11.553][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:11.554][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:11.555][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:11.556][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:11.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:11.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:11.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:11.559][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:11.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:11.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:11.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:11.563][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:11.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:11.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:11.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:11.567][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:11.567][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:11.568][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:11.572][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:11.573][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:11.573][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:11.574][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:11.575][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:11.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:11.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:11.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:11.579][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:11.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:11.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:11.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:11.583][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:11.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:11.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:11.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:11.586][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:11.587][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:11.588][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:11.591][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:11.592][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:11.593][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:11.594][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:11.595][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:11.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:11.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:11.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:11.598][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:11.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:11.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:11.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:11.602][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:11.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:11.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:11.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:11.606][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:11.606][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:11.607][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:11.611][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:11.612][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:11.613][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:11.613][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:11.614][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:11.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:11.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:11.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:11.618][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:11.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:11.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:11.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:11.622][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:11.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:11.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:11.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:11.625][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:11.626][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:11.627][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:11.631][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:11.631][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:11.632][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:11.633][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:11.634][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:11.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:11.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:11.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:11.638][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:11.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:11.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:11.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:11.642][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:11.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:11.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:11.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:11.645][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:11.646][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:11.647][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:11.650][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:11.651][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:11.652][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:11.653][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:11.654][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:11.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:11.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:11.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:11.658][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:11.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:11.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:11.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:11.661][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:11.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:11.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:11.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:11.665][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:11.666][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:11.667][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:11.670][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:11.671][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:11.672][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:11.673][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:11.674][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:11.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:11.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:11.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:11.677][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:11.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:11.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:11.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:11.681][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:11.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:11.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:11.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:11.685][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:11.686][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:11.686][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:11.690][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:11.691][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:11.692][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:11.693][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:11.694][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:11.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:11.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:11.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:11.697][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:11.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:11.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:11.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:11.701][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:11.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:11.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:11.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:11.705][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:11.705][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:11.706][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:11.710][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:11.711][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:11.712][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:11.712][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:11.713][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:11.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:11.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:11.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:11.717][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:11.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:11.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:11.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:11.721][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:11.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:11.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:11.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:11.724][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:11.725][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:11.726][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:11.730][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:11.731][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:11.732][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:11.732][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:11.733][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:11.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:11.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:11.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:11.737][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:11.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:11.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:11.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:11.741][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:11.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:11.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:11.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:11.745][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-07-26 16:02:11.746][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:11.747][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:11.748][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:11.751][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:11.752][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:11.753][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:11.754][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:11.755][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:11.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:11.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:11.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:11.759][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:11.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:11.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:11.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:11.762][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:11.763][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-07-26 16:02:11.764][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-26 16:02:11.765][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-26 16:02:11.766][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:11.767][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:11.768][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:11.769][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:11.769][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:11.770][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:11.776][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:11.777][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:11.778][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:11.779][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:11.780][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:11.781][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:11.782][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:11.783][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:11.784][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:11.785][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-26 16:02:11.786][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:11.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:11.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:11.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:11.789][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:11.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:11.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:11.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:11.793][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:11.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:11.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:11.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:11.797][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [7799].
biodb.DEBUG[2025-07-26 16:02:11.798][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:11.798][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:11.799][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:11.803][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:11.804][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:11.805][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:11.805][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:11.807][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:11.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:11.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:11.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:11.810][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:11.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:11.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:11.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:11.814][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:11.815][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-07-26 16:02:11.815][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-26 16:02:11.816][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-26 16:02:11.817][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:11.818][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:11.819][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:11.820][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:11.821][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:11.822][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:11.823][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:11.823][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:11.824][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:11.825][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:11.826][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:11.827][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:11.828][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:11.829][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:11.830][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:11.830][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-26 16:02:11.831][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:11.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:11.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:11.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:11.835][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:11.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:11.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:11.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:11.839][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:11.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:11.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:11.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:11.843][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [71954].
biodb.DEBUG[2025-07-26 16:02:11.843][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:11.844][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:11.845][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:11.849][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:11.850][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:11.851][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:11.851][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:11.852][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:11.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:11.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:11.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:11.856][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:11.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:11.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:11.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:11.860][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:11.861][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-07-26 16:02:11.861][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-26 16:02:11.862][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-26 16:02:11.863][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:11.864][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:11.865][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:11.866][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:11.867][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:11.868][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:11.869][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:11.870][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:11.870][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:11.871][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:11.872][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:11.873][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:11.874][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:11.875][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:11.876][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:11.877][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-26 16:02:11.878][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:11.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:11.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:11.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:11.881][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:11.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:11.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:11.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:11.885][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:11.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:11.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:11.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:11.889][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [197612].
biodb.DEBUG[2025-07-26 16:02:11.890][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-07-26 16:02:11.891][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2025-07-26 16:02:11.905][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:11.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:11.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:11.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:11.909][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:11.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:11.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:11.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:11.912][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:11.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:11.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:11.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:11.916][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:11.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:11.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:11.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:11.920][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:11.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:11.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:11.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:11.924][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:11.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:11.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:11.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:11.927][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:11.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:11.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:11.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:11.931][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:11.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:11.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:11.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:11.935][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:11.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:11.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:11.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:11.938][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:11.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:11.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:11.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:11.942][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:11.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:11.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:11.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:11.946][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:11.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:11.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:11.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:11.952][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:11.952][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:11.953][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:11.957][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:11.958][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:11.959][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:11.960][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-07-26 16:02:11.962][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.1*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-07-26 16:02:11.964][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-07-26 16:02:11.971][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/10aed56c10c2ef392c152ae3e17290c4.content.
sched.DEBUG[2025-07-26 16:02:11.972][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-07-26 16:02:11.977][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:11.978][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:11.979][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:11.983][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:11.984][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:11.985][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:11.985][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:11.987][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:11.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:11.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:11.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:11.990][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:11.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:11.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:11.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:11.994][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:11.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:11.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:11.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:11.998][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:11.998][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:11.999][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:12.003][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:12.004][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:12.005][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:12.006][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:12.007][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:12.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:12.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:12.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:12.010][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:12.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:12.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:12.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:12.014][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:12.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:12.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:12.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:12.018][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:12.019][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:12.020][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:12.030][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:12.031][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:12.032][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:12.032][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:12.033][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:12.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:12.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:12.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:12.037][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:12.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:12.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:12.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:12.041][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:12.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:12.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:12.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:12.045][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:12.045][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:12.046][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:12.050][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:12.051][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:12.052][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:12.053][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:12.054][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:12.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:12.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:12.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:12.057][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:12.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:12.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:12.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:12.061][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:12.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:12.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:12.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:12.064][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:12.065][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:12.066][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:12.070][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:12.071][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:12.071][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:12.072][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:12.073][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:12.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:12.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:12.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:12.077][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:12.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:12.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:12.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:12.080][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:12.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:12.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:12.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:12.084][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:12.085][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:12.086][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:12.089][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:12.090][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:12.091][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:12.092][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-26 16:02:12.093][private$loadEntries] Creating entries from ids [1]: "9442".
biodb.DEBUG[2025-07-26 16:02:12.094][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-26 16:02:12.095][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-26 16:02:12.100][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/9442.xml.
biodb.DEBUG[2025-07-26 16:02:12.101][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-26 16:02:12.102][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-26 16:02:12.103][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-26 16:02:12.105][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:12.106][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:12.106][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:12.110][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:12.111][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:12.112][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:12.113][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:12.115][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:12.116][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:12.117][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:12.118][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:12.119][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:12.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:12.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:12.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:12.123][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:12.124][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:12.124][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:12.125][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:12.126][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:12.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:12.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:12.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:12.130][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:12.131][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:12.132][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:12.133][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:12.134][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:12.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:12.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:12.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:12.138][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:12.139][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:12.140][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:12.141][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:12.142][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:12.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:12.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:12.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:12.145][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:12.146][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:12.147][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:12.148][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:12.149][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:12.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:12.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:12.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:12.153][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:12.154][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:12.155][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:12.156][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:12.157][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:12.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:12.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:12.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:12.161][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-26 16:02:12.162][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:12.163][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:12.164][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:12.165][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-26 16:02:12.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:12.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:12.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:12.168][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:12.169][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:12.170][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:12.171][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:12.172][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:12.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:12.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:12.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:12.176][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:12.177][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:12.178][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:12.179][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:12.180][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:12.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:12.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:12.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:12.184][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-26 16:02:12.185][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:12.186][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:12.186][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:12.188][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-26 16:02:12.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:12.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:12.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:12.191][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:12.192][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:12.193][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:12.194][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:12.195][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:12.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:12.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:12.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:12.199][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:12.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:12.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:12.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:12.203][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:12.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:12.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:12.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:12.206][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:12.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:12.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:12.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:12.210][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:12.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:12.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:12.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:12.214][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:12.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:12.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:12.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:12.217][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:12.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:12.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:12.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:12.221][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:12.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:12.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:12.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:12.225][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:12.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:12.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:12.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:12.229][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:12.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:12.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:12.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:12.232][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:12.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:12.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:12.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:12.236][self$createEntryFromContent] Accession numbers: 9442.
biodb.TRACE[2025-07-26 16:02:12.237][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:12.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:12.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:12.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:12.241][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:12.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:12.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:12.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:12.244][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:12.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:12.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:12.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:12.248][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:12.249][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:12.250][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:12.254][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:12.255][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:12.256][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:12.256][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-26 16:02:12.257][private$loadEntries] Creating entries from ids [1]: "34764".
biodb.DEBUG[2025-07-26 16:02:12.258][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-26 16:02:12.260][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-26 16:02:12.265][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/34764.xml.
biodb.DEBUG[2025-07-26 16:02:12.266][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-26 16:02:12.267][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-26 16:02:12.268][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-26 16:02:12.269][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:12.270][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:12.271][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:12.275][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:12.276][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:12.281][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:12.282][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:12.285][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:12.286][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:12.287][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:12.288][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:12.289][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:12.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:12.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:12.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:12.293][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:12.293][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:12.294][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:12.295][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:12.296][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:12.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:12.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:12.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:12.300][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:12.301][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:12.302][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:12.303][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:12.304][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:12.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:12.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:12.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:12.308][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:12.309][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:12.310][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:12.310][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:12.312][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:12.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:12.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:12.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:12.315][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:12.316][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:12.317][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:12.318][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:12.319][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:12.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:12.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:12.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:12.323][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:12.324][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:12.324][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:12.325][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:12.326][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:12.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:12.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:12.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:12.330][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-26 16:02:12.331][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:12.332][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:12.333][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:12.334][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-26 16:02:12.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:12.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:12.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:12.337][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:12.338][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:12.339][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:12.340][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:12.341][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:12.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:12.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:12.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:12.345][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:12.346][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:12.347][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:12.348][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:12.349][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:12.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:12.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:12.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:12.353][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-26 16:02:12.354][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:12.355][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:12.355][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:12.357][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-26 16:02:12.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:12.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:12.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:12.360][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:12.361][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:12.362][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:12.363][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:12.364][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:12.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:12.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:12.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:12.368][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:12.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:12.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:12.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:12.371][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:12.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:12.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:12.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:12.375][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:12.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:12.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:12.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:12.379][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:12.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:12.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:12.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:12.382][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:12.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:12.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:12.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:12.386][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:12.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:12.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:12.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:12.390][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:12.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:12.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:12.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:12.393][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:12.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:12.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:12.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:12.397][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:12.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:12.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:12.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:12.401][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:12.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:12.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:12.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:12.404][self$createEntryFromContent] Accession numbers: 34764.
biodb.TRACE[2025-07-26 16:02:12.405][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:12.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:12.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:12.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:12.409][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:12.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:12.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:12.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:12.413][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:12.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:12.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:12.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:12.417][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-07-26 16:02:12.418][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:12.419][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:12.420][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:12.424][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:12.425][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:12.426][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:12.426][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:12.427][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:12.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:12.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:12.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:12.431][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:12.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:12.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:12.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:12.435][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:12.436][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-07-26 16:02:12.437][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-26 16:02:12.437][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-26 16:02:12.438][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:12.439][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:12.440][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:12.441][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:12.442][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:12.443][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:12.444][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:12.445][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:12.446][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:12.446][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:12.447][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:12.448][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:12.449][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:12.450][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:12.451][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:12.452][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-26 16:02:12.453][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:12.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:12.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:12.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:12.457][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:12.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:12.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:12.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:12.460][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:12.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:12.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:12.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:12.464][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [3014].
biodb.DEBUG[2025-07-26 16:02:12.465][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:12.466][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:12.467][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:12.471][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:12.472][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:12.473][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:12.474][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:12.475][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:12.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:12.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:12.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:12.478][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:12.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:12.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:12.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:12.482][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:12.483][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-07-26 16:02:12.484][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-26 16:02:12.485][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-26 16:02:12.486][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:12.487][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:12.487][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:12.488][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:12.489][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:12.490][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:12.491][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:12.492][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:12.493][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:12.494][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:12.495][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:12.496][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:12.497][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:12.497][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:12.498][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:12.499][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-26 16:02:12.500][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:12.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:12.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:12.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:12.504][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:12.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:12.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:12.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:12.508][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:12.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:12.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:12.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:12.512][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [7799].
biodb.DEBUG[2025-07-26 16:02:12.513][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:12.513][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:12.514][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:12.518][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:12.519][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:12.520][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:12.521][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:12.522][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:12.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:12.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:12.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:12.531][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:12.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:12.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:12.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:12.535][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:12.536][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-07-26 16:02:12.537][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-26 16:02:12.538][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-26 16:02:12.539][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:12.540][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:12.541][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:12.542][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:12.542][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:12.543][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:12.544][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:12.545][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:12.546][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:12.547][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:12.548][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:12.549][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:12.550][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:12.551][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:12.551][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:12.552][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-26 16:02:12.553][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:12.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:12.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:12.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:12.557][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:12.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:12.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:12.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:12.561][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:12.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:12.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:12.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:12.564][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [34764].
biodb.DEBUG[2025-07-26 16:02:12.565][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-07-26 16:02:12.566][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-07-26 16:02:12.568][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:12.569][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:12.570][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:12.574][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:12.575][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:12.575][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:12.576][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-07-26 16:02:12.579][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-07-26 16:02:12.581][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-07-26 16:02:12.588][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/c90d0c20ab1b82ab9da517c0299e1056.content.
sched.DEBUG[2025-07-26 16:02:12.589][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-07-26 16:02:12.595][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:12.596][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:12.597][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:12.600][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:12.601][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:12.602][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:12.603][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-26 16:02:12.604][private$loadEntries] Creating entries from ids [1]: "2535".
biodb.DEBUG[2025-07-26 16:02:12.605][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-26 16:02:12.606][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-26 16:02:12.610][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/2535.xml.
biodb.DEBUG[2025-07-26 16:02:12.611][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-26 16:02:12.612][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-26 16:02:12.613][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-26 16:02:12.615][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:12.616][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:12.617][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:12.620][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:12.621][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:12.622][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:12.623][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:12.625][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:12.626][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:12.627][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:12.628][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:12.629][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:12.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:12.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:12.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:12.632][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:12.633][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:12.634][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:12.635][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:12.636][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:12.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:12.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:12.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:12.640][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:12.641][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:12.642][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:12.643][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:12.644][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:12.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:12.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:12.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:12.648][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:12.649][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:12.650][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:12.651][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:12.652][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:12.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:12.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:12.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:12.655][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:12.656][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:12.657][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:12.658][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:12.659][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:12.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:12.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:12.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:12.663][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:12.664][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:12.665][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:12.666][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:12.667][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:12.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:12.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:12.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:12.671][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-26 16:02:12.672][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:12.672][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:12.673][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:12.674][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-26 16:02:12.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:12.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:12.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:12.678][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:12.679][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:12.680][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:12.681][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:12.682][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:12.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:12.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:12.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:12.686][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:12.687][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:12.688][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:12.688][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:12.690][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:12.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:12.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:12.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:12.693][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-26 16:02:12.694][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:12.695][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:12.696][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:12.697][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-26 16:02:12.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:12.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:12.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:12.701][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:12.702][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:12.703][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:12.704][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:12.705][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:12.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:12.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:12.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:12.709][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:12.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:12.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:12.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:12.712][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:12.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:12.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:12.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:12.716][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:12.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:12.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:12.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:12.720][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:12.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:12.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:12.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:12.723][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:12.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:12.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:12.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:12.727][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:12.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:12.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:12.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:12.731][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:12.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:12.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:12.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:12.734][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:12.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:12.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:12.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:12.738][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:12.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:12.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:12.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:12.742][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:12.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:12.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:12.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:12.745][self$createEntryFromContent] Accession numbers: 2535.
biodb.TRACE[2025-07-26 16:02:12.746][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:12.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:12.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:12.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:12.750][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:12.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:12.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:12.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:12.754][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:12.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:12.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:12.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:12.758][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:12.758][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:12.759][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:12.763][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:12.764][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:12.765][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:12.766][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:12.767][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:12.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:12.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:12.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:12.771][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:12.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:12.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:12.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:12.774][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:12.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:12.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:12.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:12.778][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:12.784][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:12.785][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:12.790][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:12.790][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:12.791][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:12.792][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-26 16:02:12.793][private$loadEntries] Creating entries from ids [1]: "5525".
biodb.DEBUG[2025-07-26 16:02:12.794][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-26 16:02:12.795][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-26 16:02:12.800][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/5525.xml.
biodb.DEBUG[2025-07-26 16:02:12.801][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-26 16:02:12.802][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-26 16:02:12.803][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-26 16:02:12.804][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:12.805][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:12.806][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:12.810][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:12.811][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:12.811][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:12.812][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:12.814][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:12.815][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:12.816][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:12.817][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:12.818][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:12.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:12.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:12.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:12.822][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:12.823][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:12.824][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:12.824][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:12.826][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:12.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:12.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:12.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:12.829][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:12.830][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:12.831][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:12.832][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:12.833][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:12.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:12.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:12.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:12.837][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:12.838][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:12.839][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:12.839][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:12.841][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:12.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:12.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:12.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:12.844][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:12.845][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:12.846][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:12.847][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:12.848][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:12.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:12.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:12.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:12.852][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:12.853][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:12.853][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:12.854][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:12.855][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:12.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:12.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:12.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:12.859][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-26 16:02:12.860][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:12.861][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:12.862][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:12.863][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-26 16:02:12.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:12.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:12.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:12.867][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:12.868][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:12.868][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:12.869][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:12.870][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:12.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:12.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:12.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:12.874][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:12.875][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:12.876][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:12.877][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:12.878][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:12.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:12.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:12.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:12.882][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-26 16:02:12.883][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:12.884][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:12.884][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:12.886][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-26 16:02:12.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:12.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:12.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:12.889][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:12.890][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:12.891][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:12.892][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:12.893][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:12.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:12.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:12.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:12.897][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:12.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:12.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:12.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:12.901][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:12.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:12.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:12.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:12.904][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:12.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:12.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:12.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:12.908][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:12.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:12.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:12.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:12.912][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:12.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:12.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:12.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:12.915][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:12.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:12.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:12.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:12.919][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:12.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:12.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:12.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:12.923][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:12.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:12.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:12.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:12.927][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:12.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:12.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:12.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:12.930][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:12.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:12.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:12.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:12.934][self$createEntryFromContent] Accession numbers: 5525.
biodb.TRACE[2025-07-26 16:02:12.935][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:12.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:12.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:12.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:12.939][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:12.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:12.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:12.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:12.942][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:12.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:12.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:12.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:12.946][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:12.947][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:12.948][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:12.952][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:12.953][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:12.953][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:12.954][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:12.955][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:12.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:12.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:12.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:12.959][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:12.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:12.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:12.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:12.963][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:12.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:12.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:12.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:12.966][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-07-26 16:02:12.968][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:12.969][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:12.970][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:12.974][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:12.974][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:12.975][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:12.976][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:12.977][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:12.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:12.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:12.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:12.981][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:12.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:12.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:12.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:12.985][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:12.985][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-07-26 16:02:12.986][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-26 16:02:12.987][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-26 16:02:12.988][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:12.989][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:12.990][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:12.991][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:12.992][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:12.993][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:12.994][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:12.994][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:12.995][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:12.996][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:12.997][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:12.998][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:12.999][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:13.000][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:13.001][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:13.002][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-26 16:02:13.003][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:13.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:13.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:13.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:13.006][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:13.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:13.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:13.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:13.010][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:13.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:13.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:13.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:13.014][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [2535].
biodb.DEBUG[2025-07-26 16:02:13.015][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:13.016][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:13.017][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:13.020][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:13.021][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:13.022][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:13.023][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:13.024][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:13.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:13.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:13.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:13.028][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:13.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:13.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:13.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:13.037][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:13.038][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-07-26 16:02:13.039][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-26 16:02:13.040][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-26 16:02:13.041][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:13.042][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:13.043][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:13.044][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:13.044][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:13.045][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:13.046][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:13.047][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:13.048][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:13.049][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:13.050][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:13.051][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:13.052][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:13.053][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:13.053][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:13.054][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-26 16:02:13.055][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:13.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:13.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:13.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:13.059][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:13.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:13.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:13.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:13.063][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:13.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:13.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:13.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:13.066][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2025-07-26 16:02:13.067][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:13.068][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:13.069][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:13.073][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:13.074][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:13.075][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:13.075][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:13.077][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:13.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:13.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:13.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:13.080][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:13.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:13.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:13.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:13.084][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:13.085][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-07-26 16:02:13.085][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-26 16:02:13.086][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-26 16:02:13.087][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:13.088][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:13.089][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:13.090][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:13.091][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:13.092][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:13.093][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:13.093][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:13.094][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:13.095][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:13.096][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:13.097][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:13.098][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:13.099][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:13.100][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:13.101][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-26 16:02:13.102][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:13.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:13.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:13.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:13.105][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:13.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:13.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:13.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:13.109][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:13.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:13.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:13.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:13.113][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [16587].
biodb.DEBUG[2025-07-26 16:02:13.114][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-07-26 16:02:13.114][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-07-26 16:02:13.116][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:13.117][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:13.118][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:13.122][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:13.123][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:13.124][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:13.124][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-07-26 16:02:13.127][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=409.9*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-07-26 16:02:13.129][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-07-26 16:02:13.132][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/633ffa8aab56d260ba52bc860645ac89.content.
sched.DEBUG[2025-07-26 16:02:13.133][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-07-26 16:02:13.135][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:13.136][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:13.137][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:13.141][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:13.142][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:13.143][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:13.144][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-26 16:02:13.145][private$loadEntries] Creating entries from ids [1]: "31303".
biodb.DEBUG[2025-07-26 16:02:13.146][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-26 16:02:13.147][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-26 16:02:13.151][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/31303.xml.
biodb.DEBUG[2025-07-26 16:02:13.152][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-26 16:02:13.153][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-26 16:02:13.154][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-26 16:02:13.156][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:13.157][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:13.158][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:13.162][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:13.162][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:13.163][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:13.164][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:13.166][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:13.167][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:13.168][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:13.169][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:13.170][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:13.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:13.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:13.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:13.174][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:13.175][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:13.176][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:13.177][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:13.178][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:13.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:13.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:13.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:13.182][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:13.183][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:13.184][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:13.184][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:13.186][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:13.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:13.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:13.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:13.189][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:13.190][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:13.191][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:13.192][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:13.193][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:13.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:13.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:13.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:13.197][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:13.198][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:13.199][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:13.200][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:13.201][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:13.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:13.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:13.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:13.205][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:13.206][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:13.207][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:13.208][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:13.209][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-26 16:02:13.210][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:13.211][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:13.212][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:13.213][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-26 16:02:13.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:13.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:13.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:13.217][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:13.218][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:13.219][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:13.219][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:13.221][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:13.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:13.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:13.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:13.224][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:13.225][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:13.226][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:13.227][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:13.228][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:13.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:13.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:13.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:13.232][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-26 16:02:13.233][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:13.234][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:13.235][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:13.236][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-26 16:02:13.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:13.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:13.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:13.240][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:13.241][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:13.242][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:13.243][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:13.244][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:13.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:13.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:13.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:13.247][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:13.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:13.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:13.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:13.251][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:13.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:13.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:13.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:13.255][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:13.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:13.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:13.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:13.258][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:13.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:13.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:13.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:13.262][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:13.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:13.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:13.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:13.266][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:13.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:13.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:13.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:13.269][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:13.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:13.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:13.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:13.273][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:13.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:13.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:13.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:13.277][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:13.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:13.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:13.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:13.285][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:13.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:13.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:13.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:13.290][self$createEntryFromContent] Accession numbers: 31303.
biodb.TRACE[2025-07-26 16:02:13.291][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:13.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:13.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:13.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:13.295][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:13.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:13.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:13.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:13.298][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:13.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:13.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:13.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:13.302][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:13.303][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:13.303][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:13.308][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:13.308][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:13.309][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:13.310][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-26 16:02:13.311][private$loadEntries] Creating entries from ids [1]: "37118".
biodb.DEBUG[2025-07-26 16:02:13.312][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-26 16:02:13.313][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-26 16:02:13.316][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/37118.xml.
biodb.DEBUG[2025-07-26 16:02:13.317][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-26 16:02:13.318][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-26 16:02:13.319][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-26 16:02:13.321][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:13.321][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:13.322][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:13.326][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:13.327][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:13.328][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:13.329][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:13.331][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:13.332][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:13.332][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:13.333][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:13.334][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:13.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:13.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:13.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:13.338][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:13.339][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:13.340][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:13.341][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:13.342][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:13.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:13.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:13.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:13.346][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:13.347][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:13.347][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:13.348][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:13.349][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:13.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:13.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:13.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:13.353][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:13.354][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:13.355][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:13.356][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:13.357][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:13.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:13.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:13.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:13.361][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:13.362][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:13.362][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:13.363][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:13.364][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:13.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:13.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:13.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:13.368][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:13.369][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:13.370][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:13.371][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:13.372][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-26 16:02:13.373][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:13.374][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:13.375][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:13.376][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-26 16:02:13.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:13.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:13.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:13.379][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:13.380][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:13.381][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:13.382][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:13.383][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:13.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:13.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:13.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:13.387][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:13.388][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:13.389][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:13.390][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:13.391][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:13.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:13.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:13.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:13.395][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-26 16:02:13.396][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:13.397][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:13.398][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:13.399][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-26 16:02:13.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:13.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:13.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:13.402][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:13.403][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:13.404][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:13.405][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:13.406][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:13.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:13.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:13.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:13.410][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:13.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:13.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:13.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:13.414][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:13.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:13.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:13.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:13.417][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:13.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:13.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:13.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:13.421][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:13.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:13.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:13.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:13.425][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:13.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:13.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:13.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:13.428][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:13.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:13.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:13.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:13.432][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:13.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:13.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:13.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:13.436][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:13.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:13.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:13.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:13.440][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:13.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:13.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:13.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:13.443][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:13.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:13.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:13.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:13.447][self$createEntryFromContent] Accession numbers: 37118.
biodb.TRACE[2025-07-26 16:02:13.448][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:13.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:13.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:13.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:13.452][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:13.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:13.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:13.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:13.455][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:13.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:13.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:13.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:13.459][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:13.460][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:13.461][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:13.465][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:13.466][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:13.467][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:13.467][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-26 16:02:13.468][private$loadEntries] Creating entries from ids [1]: "39424".
biodb.DEBUG[2025-07-26 16:02:13.469][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-26 16:02:13.471][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-26 16:02:13.474][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/39424.xml.
biodb.DEBUG[2025-07-26 16:02:13.475][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-26 16:02:13.476][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-26 16:02:13.477][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-26 16:02:13.479][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:13.480][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:13.481][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:13.485][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:13.486][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:13.486][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:13.487][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:13.489][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:13.490][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:13.491][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:13.492][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:13.493][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:13.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:13.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:13.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:13.497][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:13.498][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:13.499][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:13.500][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:13.501][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:13.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:13.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:13.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:13.505][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:13.505][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:13.506][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:13.507][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:13.508][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:13.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:13.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:13.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:13.512][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:13.513][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:13.514][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:13.515][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:13.516][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:13.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:13.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:13.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:13.520][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:13.521][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:13.521][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:13.522][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:13.523][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:13.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:13.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:13.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:13.527][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:13.528][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:13.529][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:13.530][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:13.547][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-26 16:02:13.548][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:13.549][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:13.550][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:13.552][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-26 16:02:13.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:13.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:13.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:13.555][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:13.556][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:13.557][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:13.558][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:13.559][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:13.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:13.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:13.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:13.563][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:13.564][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:13.565][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:13.566][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:13.567][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:13.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:13.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:13.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:13.571][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-26 16:02:13.572][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:13.573][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:13.573][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:13.575][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-26 16:02:13.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:13.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:13.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:13.578][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:13.579][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:13.580][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:13.581][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:13.582][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:13.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:13.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:13.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:13.586][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:13.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:13.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:13.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:13.589][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:13.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:13.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:13.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:13.593][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:13.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:13.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:13.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:13.597][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:13.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:13.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:13.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:13.600][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:13.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:13.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:13.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:13.604][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:13.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:13.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:13.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:13.608][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:13.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:13.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:13.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:13.611][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:13.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:13.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:13.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:13.615][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:13.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:13.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:13.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:13.619][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:13.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:13.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:13.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:13.622][self$createEntryFromContent] Accession numbers: 39424.
biodb.TRACE[2025-07-26 16:02:13.624][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:13.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:13.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:13.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:13.627][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:13.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:13.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:13.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:13.631][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:13.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:13.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:13.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:13.635][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:13.635][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:13.636][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:13.640][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:13.641][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:13.642][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:13.643][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-26 16:02:13.644][private$loadEntries] Creating entries from ids [1]: "81767".
biodb.DEBUG[2025-07-26 16:02:13.645][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-26 16:02:13.646][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-26 16:02:13.651][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/81767.xml.
biodb.DEBUG[2025-07-26 16:02:13.652][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-26 16:02:13.653][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-26 16:02:13.654][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-26 16:02:13.656][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:13.657][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:13.657][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:13.662][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:13.662][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:13.663][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:13.664][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:13.666][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:13.667][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:13.668][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:13.669][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:13.670][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:13.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:13.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:13.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:13.674][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:13.675][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:13.676][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:13.677][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:13.678][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:13.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:13.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:13.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:13.682][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:13.683][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:13.684][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:13.685][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:13.686][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:13.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:13.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:13.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:13.690][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:13.691][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:13.692][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:13.693][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:13.694][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:13.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:13.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:13.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:13.698][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:13.699][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:13.700][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:13.701][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:13.702][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:13.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:13.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:13.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:13.706][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:13.707][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:13.708][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:13.708][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:13.710][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:13.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:13.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:13.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:13.713][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-26 16:02:13.714][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:13.715][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:13.716][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:13.717][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-26 16:02:13.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:13.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:13.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:13.721][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:13.722][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:13.723][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:13.724][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:13.725][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:13.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:13.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:13.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:13.729][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:13.730][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:13.731][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:13.732][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:13.733][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:13.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:13.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:13.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:13.737][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-26 16:02:13.738][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:13.739][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:13.740][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:13.741][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-26 16:02:13.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:13.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:13.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:13.745][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:13.746][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:13.746][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:13.747][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:13.748][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:13.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:13.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:13.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:13.752][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:13.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:13.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:13.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:13.756][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:13.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:13.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:13.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:13.760][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:13.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:13.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:13.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:13.763][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:13.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:13.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:13.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:13.767][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:13.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:13.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:13.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:13.771][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:13.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:13.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:13.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:13.775][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:13.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:13.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:13.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:13.779][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:13.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:13.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:13.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:13.782][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:13.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:13.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:13.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:13.786][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:13.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:13.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:13.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:13.790][self$createEntryFromContent] Accession numbers: 81767.
biodb.TRACE[2025-07-26 16:02:13.791][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:13.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:13.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:13.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:13.794][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:13.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:13.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:13.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:13.798][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:13.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:13.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:13.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:13.807][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:13.808][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:13.809][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:13.813][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:13.814][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:13.815][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:13.816][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:13.817][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:13.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:13.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:13.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:13.820][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:13.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:13.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:13.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:13.824][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:13.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:13.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:13.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:13.828][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-07-26 16:02:13.829][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:13.830][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:13.831][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:13.835][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:13.836][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:13.837][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:13.837][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:13.839][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:13.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:13.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:13.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:13.842][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:13.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:13.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:13.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:13.846][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:13.847][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-07-26 16:02:13.847][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-26 16:02:13.848][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-26 16:02:13.849][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:13.850][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:13.851][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:13.852][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:13.853][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:13.854][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:13.855][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:13.856][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:13.856][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:13.857][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:13.858][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:13.859][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:13.860][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:13.861][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:13.862][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:13.863][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-26 16:02:13.864][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:13.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:13.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:13.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:13.867][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:13.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:13.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:13.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:13.871][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:13.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:13.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:13.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:13.875][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [31303].
biodb.DEBUG[2025-07-26 16:02:13.876][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:13.877][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:13.877][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:13.881][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:13.882][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:13.883][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:13.884][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:13.885][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:13.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:13.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:13.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:13.889][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:13.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:13.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:13.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:13.892][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:13.893][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-07-26 16:02:13.894][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-26 16:02:13.895][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-26 16:02:13.896][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:13.897][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:13.898][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:13.899][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:13.900][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:13.900][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:13.901][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:13.902][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:13.903][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:13.904][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:13.905][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:13.906][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:13.907][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:13.908][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:13.909][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:13.910][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-26 16:02:13.911][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:13.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:13.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:13.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:13.914][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:13.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:13.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:13.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:13.918][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:13.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:13.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:13.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:13.922][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [81767].
biodb.DEBUG[2025-07-26 16:02:13.923][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:13.924][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:13.925][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:13.929][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:13.930][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:13.931][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:13.932][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:13.933][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:13.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:13.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:13.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:13.936][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:13.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:13.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:13.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:13.940][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:13.941][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-07-26 16:02:13.942][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-26 16:02:13.943][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-26 16:02:13.944][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:13.945][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:13.946][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:13.946][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:13.947][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:13.948][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:13.949][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:13.950][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:13.951][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:13.952][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:13.953][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:13.954][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:13.955][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:13.955][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:13.956][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:13.957][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-26 16:02:13.958][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:13.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:13.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:13.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:13.962][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:13.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:13.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:13.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:13.966][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:13.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:13.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:13.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:13.969][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [131378].
biodb.DEBUG[2025-07-26 16:02:13.970][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-07-26 16:02:13.971][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-07-26 16:02:13.988][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:13.989][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:13.990][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:13.994][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:13.994][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:13.995][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:13.996][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-07-26 16:02:13.999][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-07-26 16:02:14.001][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-07-26 16:02:14.002][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/2e865a03592d6effdf242ff63104f35a.content.
sched.DEBUG[2025-07-26 16:02:14.003][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
sched.DEBUG[2025-07-26 16:02:14.006][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-07-26 16:02:14.009][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-07-26 16:02:14.011][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/f0c73645ca32490f91d503a462d812b2.content.
sched.DEBUG[2025-07-26 16:02:14.012][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-07-26 16:02:14.014][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:14.015][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:14.015][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:14.019][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:14.020][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:14.021][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:14.022][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:14.023][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:14.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:14.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:14.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:14.026][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:14.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:14.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:14.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:14.030][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:14.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:14.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:14.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:14.034][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:14.035][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:14.036][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:14.039][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:14.040][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:14.041][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:14.042][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:14.043][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:14.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:14.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:14.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:14.047][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:14.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:14.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:14.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:14.055][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:14.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:14.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:14.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:14.059][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:14.060][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:14.061][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:14.065][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:14.066][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:14.066][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:14.067][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:14.068][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:14.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:14.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:14.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:14.072][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:14.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:14.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:14.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:14.076][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:14.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:14.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:14.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:14.079][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-07-26 16:02:14.081][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:14.082][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:14.082][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:14.086][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:14.087][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:14.088][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:14.088][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:14.089][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:14.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:14.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:14.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:14.093][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:14.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:14.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:14.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:14.097][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:14.098][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-07-26 16:02:14.098][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-26 16:02:14.099][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-26 16:02:14.100][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:14.101][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:14.102][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:14.103][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:14.104][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:14.105][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:14.106][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:14.106][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:14.107][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:14.108][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:14.109][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:14.110][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:14.111][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:14.112][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:14.113][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:14.114][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-26 16:02:14.114][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:14.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:14.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:14.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:14.118][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:14.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:14.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:14.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:14.122][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:14.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:14.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:14.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:14.126][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4648].
biodb.DEBUG[2025-07-26 16:02:14.127][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:14.127][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:14.128][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:14.132][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:14.133][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:14.134][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:14.134][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:14.135][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:14.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:14.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:14.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:14.139][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:14.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:14.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:14.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:14.143][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:14.144][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-07-26 16:02:14.144][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-26 16:02:14.145][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-26 16:02:14.146][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:14.147][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:14.148][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:14.149][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:14.150][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:14.151][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:14.152][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:14.153][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:14.154][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:14.154][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:14.155][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:14.156][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:14.157][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:14.158][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:14.159][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:14.160][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-26 16:02:14.161][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:14.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:14.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:14.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:14.165][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:14.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:14.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:14.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:14.168][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:14.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:14.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:14.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:14.172][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2025-07-26 16:02:14.173][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:14.174][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:14.175][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:14.179][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:14.180][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:14.181][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:14.181][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:14.183][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:14.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:14.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:14.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:14.186][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:14.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:14.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:14.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:14.190][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:14.191][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-07-26 16:02:14.192][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-26 16:02:14.192][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-26 16:02:14.193][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:14.194][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:14.195][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:14.196][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:14.197][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:14.198][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:14.199][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:14.200][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:14.201][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:14.202][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:14.202][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:14.203][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:14.204][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:14.205][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:14.206][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:14.207][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-26 16:02:14.208][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:14.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:14.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:14.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:14.212][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:14.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:14.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:14.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:14.215][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:14.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:14.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:14.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:14.219][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [62447].
biodb.DEBUG[2025-07-26 16:02:14.220][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-07-26 16:02:14.221][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-07-26 16:02:14.223][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:14.224][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:14.225][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:14.229][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:14.230][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:14.230][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:14.231][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-07-26 16:02:14.234][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.29*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-07-26 16:02:14.236][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-07-26 16:02:14.239][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/aad5aa7c63b98774a5df46d96a4e7cac.content.
sched.DEBUG[2025-07-26 16:02:14.240][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-07-26 16:02:14.242][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:14.243][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:14.244][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:14.248][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:14.248][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:14.249][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:14.250][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:14.251][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:14.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:14.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:14.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:14.255][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:14.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:14.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:14.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:14.259][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:14.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:14.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:14.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:14.262][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:14.263][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:14.264][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:14.268][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:14.269][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:14.270][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:14.270][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:14.271][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:14.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:14.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:14.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:14.275][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:14.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:14.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:14.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:14.279][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:14.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:14.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:14.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:14.283][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:14.283][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:14.284][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:14.288][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:14.289][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:14.290][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:14.291][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:14.292][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:14.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:14.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:14.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:14.295][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:14.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:14.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:14.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:14.304][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:14.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:14.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:14.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:14.308][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-07-26 16:02:14.310][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:14.310][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:14.311][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:14.315][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:14.316][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:14.317][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:14.318][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:14.319][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:14.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:14.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:14.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:14.323][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:14.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:14.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:14.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:14.326][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:14.327][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-07-26 16:02:14.328][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-26 16:02:14.329][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-26 16:02:14.330][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:14.331][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:14.332][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:14.332][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:14.333][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:14.334][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:14.335][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:14.336][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:14.337][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:14.338][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:14.339][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:14.340][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:14.340][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:14.341][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:14.342][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:14.343][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-26 16:02:14.344][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:14.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:14.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:14.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:14.348][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:14.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:14.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:14.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:14.351][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:14.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:14.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:14.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:14.355][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2025-07-26 16:02:14.356][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:14.357][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:14.358][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:14.362][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:14.363][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:14.364][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:14.365][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:14.366][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:14.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:14.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:14.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:14.369][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:14.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:14.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:14.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:14.373][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:14.374][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-07-26 16:02:14.375][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-26 16:02:14.376][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-26 16:02:14.376][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:14.377][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:14.378][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:14.379][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:14.380][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:14.381][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:14.382][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:14.383][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:14.384][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:14.385][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:14.385][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:14.386][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:14.387][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:14.388][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:14.389][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:14.390][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-26 16:02:14.391][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:14.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:14.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:14.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:14.395][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:14.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:14.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:14.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:14.398][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:14.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:14.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:14.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:14.402][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [91601].
biodb.DEBUG[2025-07-26 16:02:14.403][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:14.404][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:14.405][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:14.409][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:14.410][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:14.411][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:14.412][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:14.413][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:14.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:14.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:14.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:14.417][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:14.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:14.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:14.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:14.420][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:14.421][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-07-26 16:02:14.422][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-26 16:02:14.423][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-26 16:02:14.424][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:14.425][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:14.426][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:14.427][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:14.427][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:14.428][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:14.429][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:14.430][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:14.431][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:14.432][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:14.433][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:14.434][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:14.435][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:14.436][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:14.437][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:14.438][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-26 16:02:14.438][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:14.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:14.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:14.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:14.442][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:14.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:14.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:14.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:14.446][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:14.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:14.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:14.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:14.450][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [95147].
biodb.DEBUG[2025-07-26 16:02:14.451][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-07-26 16:02:14.452][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-07-26 16:02:14.454][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:14.455][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:14.455][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:14.460][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:14.460][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:14.461][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:14.462][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-07-26 16:02:14.465][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.17*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-07-26 16:02:14.467][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-07-26 16:02:14.471][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/039d0a183be9e894c19f49abb7cadca8.content.
sched.DEBUG[2025-07-26 16:02:14.472][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-07-26 16:02:14.474][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:14.475][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:14.476][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:14.480][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:14.481][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:14.482][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:14.482][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:14.483][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:14.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:14.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:14.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:14.487][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:14.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:14.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:14.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:14.491][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:14.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:14.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:14.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:14.495][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:14.495][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:14.496][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:14.500][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:14.501][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:14.502][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:14.503][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:14.504][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:14.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:14.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:14.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:14.507][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:14.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:14.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:14.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:14.511][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:14.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:14.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:14.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:14.515][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:14.516][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:14.516][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:14.520][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:14.521][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:14.522][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:14.523][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:14.524][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:14.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:14.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:14.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:14.528][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:14.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:14.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:14.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:14.531][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:14.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:14.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:14.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:14.535][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-07-26 16:02:14.537][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:14.537][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:14.538][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:14.542][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:14.543][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:14.544][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:14.545][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:14.546][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:14.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:14.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:14.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:14.555][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:14.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:14.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:14.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:14.559][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:14.560][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-07-26 16:02:14.561][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-26 16:02:14.562][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-26 16:02:14.563][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:14.564][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:14.565][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:14.566][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:14.566][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:14.567][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:14.568][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:14.569][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:14.570][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:14.571][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:14.572][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:14.573][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:14.574][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:14.575][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:14.576][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:14.577][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-26 16:02:14.578][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:14.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:14.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:14.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:14.581][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:14.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:14.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:14.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:14.585][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:14.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:14.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:14.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:14.589][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [636].
biodb.DEBUG[2025-07-26 16:02:14.590][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:14.591][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:14.591][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:14.595][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:14.596][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:14.597][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:14.598][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:14.599][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:14.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:14.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:14.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:14.603][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:14.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:14.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:14.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:14.606][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:14.607][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-07-26 16:02:14.608][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-26 16:02:14.609][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-26 16:02:14.610][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:14.611][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:14.612][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:14.612][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:14.613][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:14.614][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:14.615][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:14.616][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:14.617][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:14.618][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:14.619][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:14.619][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:14.620][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:14.621][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:14.622][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:14.623][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-26 16:02:14.624][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:14.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:14.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:14.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:14.628][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:14.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:14.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:14.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:14.631][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:14.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:14.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:14.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:14.635][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [64199].
biodb.DEBUG[2025-07-26 16:02:14.636][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:14.637][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:14.638][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:14.642][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:14.643][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:14.644][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:14.644][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:14.645][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:14.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:14.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:14.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:14.649][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:14.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:14.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:14.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:14.653][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:14.654][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-07-26 16:02:14.655][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-26 16:02:14.655][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-26 16:02:14.656][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:14.657][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:14.658][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:14.659][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:14.660][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:14.661][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:14.662][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:14.663][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:14.664][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:14.665][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:14.666][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:14.666][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:14.667][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:14.668][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:14.669][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:14.670][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-26 16:02:14.671][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:14.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:14.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:14.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:14.675][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:14.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:14.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:14.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:14.679][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:14.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:14.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:14.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:14.683][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [65648].
biodb.DEBUG[2025-07-26 16:02:14.683][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-07-26 16:02:14.684][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-07-26 16:02:14.701][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:14.702][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:14.703][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:14.707][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:14.708][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:14.708][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:14.709][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-07-26 16:02:14.712][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.3*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-07-26 16:02:14.714][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-07-26 16:02:14.719][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/76cb051f1eabf309f608d38ca52ffd0b.content.
sched.DEBUG[2025-07-26 16:02:14.720][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-07-26 16:02:14.723][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:14.724][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:14.725][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:14.728][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:14.729][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:14.730][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:14.731][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:14.732][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:14.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:14.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:14.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:14.736][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:14.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:14.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:14.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:14.739][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:14.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:14.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:14.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:14.743][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:14.744][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:14.745][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:14.749][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:14.749][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:14.750][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:14.751][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:14.752][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:14.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:14.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:14.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:14.756][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:14.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:14.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:14.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:14.760][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:14.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:14.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:14.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:14.763][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:14.764][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:14.765][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:14.769][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:14.770][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:14.771][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:14.772][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-26 16:02:14.773][private$loadEntries] Creating entries from ids [1]: "17813".
biodb.DEBUG[2025-07-26 16:02:14.773][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-26 16:02:14.775][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-26 16:02:14.779][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/17813.xml.
biodb.DEBUG[2025-07-26 16:02:14.780][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-26 16:02:14.781][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-26 16:02:14.783][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-26 16:02:14.784][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:14.785][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:14.786][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:14.790][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:14.791][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:14.792][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:14.792][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:14.795][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:14.796][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:14.797][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:14.797][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:14.799][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:14.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:14.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:14.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:14.802][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:14.803][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:14.809][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:14.810][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:14.812][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:14.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:14.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:14.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:14.816][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:14.817][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:14.818][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:14.818][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:14.820][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:14.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:14.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:14.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:14.824][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:14.824][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:14.825][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:14.826][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:14.827][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:14.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:14.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:14.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:14.831][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:14.832][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:14.833][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:14.834][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:14.835][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:14.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:14.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:14.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:14.838][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:14.839][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:14.840][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:14.841][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:14.842][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:14.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:14.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:14.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:14.846][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-26 16:02:14.847][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:14.848][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:14.849][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:14.850][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-26 16:02:14.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:14.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:14.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:14.853][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:14.854][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:14.855][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:14.856][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:14.857][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:14.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:14.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:14.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:14.861][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:14.862][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:14.863][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:14.864][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:14.865][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:14.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:14.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:14.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:14.869][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-26 16:02:14.870][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:14.870][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:14.871][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:14.872][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-26 16:02:14.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:14.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:14.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:14.876][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:14.877][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:14.878][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:14.879][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:14.880][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:14.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:14.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:14.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:14.884][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:14.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:14.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:14.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:14.887][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:14.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:14.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:14.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:14.891][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:14.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:14.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:14.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:14.894][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:14.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:14.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:14.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:14.898][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:14.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:14.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:14.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:14.902][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:14.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:14.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:14.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:14.905][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:14.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:14.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:14.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:14.909][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:14.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:14.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:14.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:14.913][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:14.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:14.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:14.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:14.917][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:14.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:14.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:14.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:14.920][self$createEntryFromContent] Accession numbers: 17813.
biodb.TRACE[2025-07-26 16:02:14.921][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:14.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:14.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:14.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:14.925][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:14.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:14.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:14.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:14.929][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:14.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:14.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:14.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:14.932][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:14.933][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:14.934][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:14.938][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:14.939][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:14.940][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:14.941][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-26 16:02:14.942][private$loadEntries] Creating entries from ids [1]: "30109".
biodb.DEBUG[2025-07-26 16:02:14.943][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-26 16:02:14.944][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-26 16:02:14.948][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/30109.xml.
biodb.DEBUG[2025-07-26 16:02:14.949][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-26 16:02:14.951][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-26 16:02:14.952][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-26 16:02:14.953][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:14.954][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:14.955][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:14.959][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:14.960][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:14.961][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:14.961][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:14.964][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:14.965][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:14.965][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:14.966][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:14.967][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:14.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:14.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:14.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:14.971][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:14.972][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:14.973][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:14.974][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:14.975][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:14.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:14.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:14.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:14.979][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:14.980][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:14.981][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:14.982][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:14.983][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:14.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:14.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:14.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:14.987][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:14.988][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:14.988][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:14.989][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:14.990][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:14.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:14.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:14.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:14.994][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:14.995][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:14.996][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:14.997][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:14.998][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:14.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:15.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:15.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:15.002][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:15.003][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:15.004][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:15.005][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:15.006][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:15.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:15.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:15.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:15.010][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-26 16:02:15.011][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:15.011][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:15.012][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:15.013][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-26 16:02:15.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:15.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:15.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:15.017][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:15.018][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:15.019][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:15.020][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:15.021][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:15.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:15.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:15.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:15.025][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:15.026][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:15.027][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:15.028][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:15.029][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:15.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:15.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:15.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:15.033][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-26 16:02:15.034][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:15.035][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:15.035][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:15.037][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-26 16:02:15.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:15.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:15.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:15.040][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:15.041][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:15.042][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:15.043][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:15.044][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:15.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:15.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:15.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:15.048][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:15.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:15.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:15.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:15.052][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:15.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:15.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:15.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:15.055][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:15.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:15.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:15.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:15.064][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:15.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:15.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:15.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:15.068][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:15.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:15.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:15.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:15.072][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:15.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:15.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:15.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:15.076][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:15.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:15.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:15.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:15.079][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:15.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:15.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:15.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:15.083][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:15.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:15.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:15.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:15.087][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:15.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:15.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:15.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:15.090][self$createEntryFromContent] Accession numbers: 30109.
biodb.TRACE[2025-07-26 16:02:15.091][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:15.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:15.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:15.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:15.095][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:15.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:15.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:15.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:15.099][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:15.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:15.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:15.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:15.102][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:15.103][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:15.104][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:15.108][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:15.109][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:15.110][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:15.110][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-26 16:02:15.112][private$loadEntries] Creating entries from ids [1]: "33275".
biodb.DEBUG[2025-07-26 16:02:15.112][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-26 16:02:15.114][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-26 16:02:15.119][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/33275.xml.
biodb.DEBUG[2025-07-26 16:02:15.120][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-26 16:02:15.121][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-26 16:02:15.122][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-26 16:02:15.124][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:15.124][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:15.125][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:15.129][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:15.130][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:15.131][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:15.132][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:15.134][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:15.135][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:15.136][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:15.137][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:15.138][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:15.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:15.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:15.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:15.142][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:15.143][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:15.143][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:15.144][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:15.145][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:15.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:15.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:15.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:15.149][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:15.150][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:15.151][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:15.152][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:15.153][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:15.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:15.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:15.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:15.157][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:15.158][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:15.159][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:15.160][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:15.161][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:15.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:15.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:15.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:15.164][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:15.165][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:15.166][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:15.167][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:15.168][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:15.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:15.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:15.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:15.172][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:15.173][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:15.174][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:15.175][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:15.176][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:15.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:15.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:15.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:15.180][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-26 16:02:15.181][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:15.182][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:15.182][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:15.184][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-26 16:02:15.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:15.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:15.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:15.187][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:15.188][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:15.189][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:15.190][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:15.191][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:15.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:15.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:15.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:15.195][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:15.196][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:15.197][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:15.198][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:15.199][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:15.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:15.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:15.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:15.203][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-26 16:02:15.204][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:15.205][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:15.206][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:15.207][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-26 16:02:15.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:15.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:15.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:15.210][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:15.211][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:15.212][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:15.213][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:15.214][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:15.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:15.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:15.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:15.218][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:15.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:15.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:15.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:15.222][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:15.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:15.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:15.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:15.225][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:15.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:15.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:15.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:15.229][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:15.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:15.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:15.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:15.233][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:15.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:15.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:15.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:15.236][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:15.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:15.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:15.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:15.240][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:15.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:15.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:15.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:15.244][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:15.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:15.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:15.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:15.248][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:15.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:15.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:15.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:15.251][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:15.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:15.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:15.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:15.255][self$createEntryFromContent] Accession numbers: 33275.
biodb.TRACE[2025-07-26 16:02:15.256][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:15.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:15.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:15.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:15.260][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:15.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:15.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:15.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:15.263][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:15.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:15.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:15.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:15.267][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:15.268][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:15.269][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:15.273][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:15.274][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:15.275][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:15.275][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-26 16:02:15.276][private$loadEntries] Creating entries from ids [1]: "33277".
biodb.DEBUG[2025-07-26 16:02:15.277][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-26 16:02:15.279][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-26 16:02:15.284][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/33277.xml.
biodb.DEBUG[2025-07-26 16:02:15.285][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-26 16:02:15.286][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-26 16:02:15.287][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-26 16:02:15.288][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:15.289][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:15.290][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:15.294][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:15.295][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:15.296][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:15.296][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:15.299][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:15.300][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:15.300][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:15.301][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:15.303][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:15.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:15.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:15.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:15.306][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:15.307][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:15.308][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:15.309][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:15.310][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:15.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:15.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:15.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:15.319][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:15.320][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:15.321][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:15.322][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:15.323][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:15.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:15.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:15.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:15.327][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:15.328][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:15.329][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:15.330][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:15.331][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:15.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:15.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:15.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:15.335][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:15.336][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:15.337][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:15.337][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:15.339][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:15.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:15.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:15.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:15.342][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:15.343][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:15.344][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:15.345][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:15.346][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:15.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:15.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:15.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:15.350][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-26 16:02:15.351][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:15.351][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:15.352][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:15.353][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-26 16:02:15.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:15.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:15.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:15.357][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:15.358][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:15.359][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:15.360][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:15.361][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:15.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:15.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:15.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:15.365][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:15.365][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:15.366][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:15.367][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:15.368][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:15.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:15.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:15.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:15.372][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-26 16:02:15.373][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:15.374][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:15.375][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:15.376][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-26 16:02:15.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:15.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:15.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:15.380][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:15.381][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:15.381][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:15.382][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:15.383][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:15.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:15.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:15.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:15.387][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:15.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:15.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:15.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:15.391][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:15.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:15.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:15.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:15.394][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:15.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:15.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:15.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:15.398][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:15.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:15.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:15.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:15.402][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:15.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:15.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:15.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:15.405][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:15.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:15.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:15.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:15.409][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:15.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:15.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:15.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:15.413][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:15.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:15.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:15.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:15.416][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:15.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:15.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:15.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:15.420][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:15.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:15.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:15.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:15.424][self$createEntryFromContent] Accession numbers: 33277.
biodb.TRACE[2025-07-26 16:02:15.425][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:15.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:15.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:15.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:15.428][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:15.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:15.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:15.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:15.432][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:15.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:15.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:15.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:15.436][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:15.437][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:15.438][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:15.442][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:15.443][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:15.444][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:15.444][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-26 16:02:15.446][private$loadEntries] Creating entries from ids [1]: "52421".
biodb.DEBUG[2025-07-26 16:02:15.446][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-26 16:02:15.448][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-26 16:02:15.452][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/52421.xml.
biodb.DEBUG[2025-07-26 16:02:15.453][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-26 16:02:15.454][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-26 16:02:15.455][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-26 16:02:15.457][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:15.458][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:15.458][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:15.463][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:15.463][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:15.464][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:15.465][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:15.467][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:15.468][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:15.469][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:15.470][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:15.471][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:15.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:15.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:15.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:15.475][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:15.476][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:15.477][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:15.478][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:15.479][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:15.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:15.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:15.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:15.483][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:15.484][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:15.484][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:15.485][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:15.487][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:15.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:15.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:15.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:15.490][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:15.491][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:15.492][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:15.493][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:15.494][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:15.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:15.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:15.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:15.498][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:15.499][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:15.500][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:15.501][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:15.502][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:15.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:15.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:15.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:15.506][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:15.507][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:15.508][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:15.508][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:15.510][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-26 16:02:15.511][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:15.511][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:15.512][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:15.513][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-26 16:02:15.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:15.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:15.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:15.517][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:15.518][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:15.519][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:15.520][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:15.521][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:15.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:15.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:15.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:15.525][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:15.526][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:15.527][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:15.528][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:15.529][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:15.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:15.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:15.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:15.533][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-26 16:02:15.534][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:15.535][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:15.536][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:15.537][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-26 16:02:15.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:15.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:15.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:15.541][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:15.542][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:15.542][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:15.543][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:15.544][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:15.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:15.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:15.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:15.548][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:15.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:15.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:15.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:15.552][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:15.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:15.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:15.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:15.556][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:15.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:15.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:15.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:15.559][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:15.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:15.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:15.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:15.563][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:15.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:15.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:15.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:15.573][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:15.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:15.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:15.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:15.577][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:15.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:15.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:15.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:15.581][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:15.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:15.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:15.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:15.585][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:15.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:15.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:15.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:15.588][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:15.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:15.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:15.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:15.592][self$createEntryFromContent] Accession numbers: 52421.
biodb.TRACE[2025-07-26 16:02:15.593][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:15.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:15.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:15.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:15.597][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:15.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:15.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:15.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:15.600][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:15.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:15.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:15.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:15.604][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:15.605][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:15.605][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:15.610][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:15.610][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:15.611][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:15.612][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:15.613][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:15.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:15.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:15.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:15.617][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:15.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:15.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:15.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:15.620][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:15.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:15.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:15.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:15.624][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-07-26 16:02:15.626][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:15.626][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:15.627][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:15.631][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:15.632][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:15.633][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:15.634][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:15.635][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:15.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:15.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:15.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:15.638][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:15.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:15.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:15.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:15.642][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:15.643][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-07-26 16:02:15.644][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-26 16:02:15.645][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-26 16:02:15.645][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:15.646][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:15.647][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:15.648][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:15.649][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:15.650][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:15.651][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:15.652][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:15.653][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:15.653][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:15.654][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:15.655][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:15.656][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:15.657][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:15.658][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:15.659][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-26 16:02:15.660][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:15.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:15.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:15.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:15.663][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:15.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:15.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:15.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:15.667][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:15.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:15.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:15.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:15.671][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4648].
biodb.DEBUG[2025-07-26 16:02:15.672][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:15.673][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:15.674][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:15.678][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:15.679][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:15.680][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:15.680][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:15.681][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:15.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:15.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:15.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:15.685][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:15.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:15.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:15.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:15.689][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:15.690][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-07-26 16:02:15.691][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-26 16:02:15.691][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-26 16:02:15.692][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:15.693][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:15.694][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:15.695][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:15.696][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:15.697][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:15.698][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:15.699][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:15.700][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:15.701][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:15.701][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:15.702][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:15.703][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:15.704][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:15.705][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:15.706][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-26 16:02:15.707][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:15.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:15.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:15.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:15.711][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:15.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:15.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:15.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:15.714][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:15.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:15.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:15.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:15.718][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2025-07-26 16:02:15.719][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:15.720][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:15.721][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:15.725][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:15.726][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:15.727][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:15.728][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:15.729][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:15.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:15.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:15.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:15.733][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:15.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:15.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:15.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:15.736][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:15.737][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-07-26 16:02:15.738][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-26 16:02:15.739][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-26 16:02:15.740][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:15.741][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:15.742][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:15.743][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:15.743][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:15.744][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:15.745][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:15.746][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:15.747][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:15.748][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:15.749][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:15.750][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:15.751][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:15.752][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:15.753][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:15.754][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-26 16:02:15.754][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:15.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:15.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:15.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:15.758][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:15.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:15.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:15.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:15.762][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:15.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:15.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:15.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:15.766][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [62447].
biodb.DEBUG[2025-07-26 16:02:15.767][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-07-26 16:02:15.768][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-07-26 16:02:15.770][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:15.770][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:15.771][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:15.775][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:15.776][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:15.777][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:15.778][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-07-26 16:02:15.780][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.2*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-07-26 16:02:15.783][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-07-26 16:02:15.790][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/3d37e3be2f5c6d64498effb7934e924b.content.
sched.DEBUG[2025-07-26 16:02:15.791][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-07-26 16:02:15.797][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:15.798][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:15.799][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:15.803][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:15.804][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:15.805][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:15.806][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:15.807][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:15.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:15.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:15.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:15.811][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:15.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:15.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:15.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:15.814][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:15.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:15.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:15.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:15.818][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:15.819][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:15.825][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:15.830][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:15.831][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:15.832][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:15.833][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:15.834][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:15.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:15.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:15.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:15.838][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:15.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:15.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:15.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:15.842][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:15.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:15.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:15.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:15.845][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:15.846][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:15.847][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:15.851][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:15.852][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:15.852][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:15.853][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-26 16:02:15.854][private$loadEntries] Creating entries from ids [1]: "65567".
biodb.DEBUG[2025-07-26 16:02:15.855][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-26 16:02:15.857][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-26 16:02:15.860][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/65567.xml.
biodb.DEBUG[2025-07-26 16:02:15.861][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-26 16:02:15.862][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-26 16:02:15.863][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-26 16:02:15.865][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:15.866][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:15.866][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:15.870][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:15.871][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:15.872][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:15.873][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:15.875][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:15.876][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:15.877][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:15.877][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:15.879][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:15.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:15.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:15.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:15.882][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:15.883][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:15.884][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:15.885][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:15.886][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:15.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:15.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:15.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:15.890][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:15.891][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:15.892][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:15.892][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:15.894][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:15.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:15.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:15.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:15.897][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:15.898][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:15.899][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:15.900][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:15.901][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:15.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:15.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:15.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:15.905][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:15.906][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:15.907][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:15.907][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:15.909][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:15.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:15.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:15.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:15.912][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:15.913][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:15.914][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:15.915][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:15.916][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-26 16:02:15.917][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:15.918][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:15.919][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:15.920][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-26 16:02:15.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:15.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:15.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:15.924][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:15.925][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:15.925][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:15.926][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:15.927][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:15.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:15.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:15.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:15.931][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:15.932][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:15.933][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:15.934][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:15.935][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:15.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:15.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:15.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:15.939][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-26 16:02:15.940][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:15.941][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:15.942][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:15.943][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-26 16:02:15.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:15.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:15.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:15.947][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:15.948][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:15.948][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:15.949][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:15.950][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:15.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:15.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:15.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:15.954][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:15.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:15.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:15.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:15.958][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:15.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:15.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:15.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:15.962][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:15.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:15.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:15.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:15.965][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:15.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:15.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:15.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:15.969][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:15.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:15.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:15.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:15.973][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:15.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:15.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:15.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:15.976][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:15.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:15.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:15.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:15.980][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:15.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:15.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:15.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:15.984][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:15.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:15.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:15.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:15.988][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:15.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:15.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:15.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:15.991][self$createEntryFromContent] Accession numbers: 65567.
biodb.TRACE[2025-07-26 16:02:15.992][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:15.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:15.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:15.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:15.996][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:15.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:15.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:15.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:16.000][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:16.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:16.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:16.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:16.003][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:16.004][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:16.005][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:16.009][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:16.010][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:16.011][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:16.012][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-26 16:02:16.013][private$loadEntries] Creating entries from ids [1]: "65576".
biodb.DEBUG[2025-07-26 16:02:16.014][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-26 16:02:16.015][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-26 16:02:16.019][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/65576.xml.
biodb.DEBUG[2025-07-26 16:02:16.020][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-26 16:02:16.021][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-26 16:02:16.022][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-26 16:02:16.024][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:16.025][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:16.026][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:16.030][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:16.030][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:16.031][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:16.032][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:16.034][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:16.035][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:16.036][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:16.037][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:16.038][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:16.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:16.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:16.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:16.042][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:16.043][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:16.044][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:16.045][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:16.046][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:16.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:16.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:16.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:16.049][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:16.050][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:16.051][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:16.052][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:16.053][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:16.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:16.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:16.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:16.057][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:16.058][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:16.059][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:16.060][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:16.061][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:16.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:16.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:16.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:16.065][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:16.066][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:16.066][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:16.067][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:16.068][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:16.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:16.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:16.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:16.072][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:16.073][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:16.079][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:16.080][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:16.081][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-26 16:02:16.082][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:16.083][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:16.084][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:16.085][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-26 16:02:16.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:16.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:16.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:16.089][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:16.090][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:16.091][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:16.092][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:16.093][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:16.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:16.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:16.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:16.097][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:16.098][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:16.098][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:16.099][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:16.101][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:16.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:16.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:16.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:16.104][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-26 16:02:16.105][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:16.106][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:16.107][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:16.108][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-26 16:02:16.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:16.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:16.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:16.112][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:16.113][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:16.113][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:16.114][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:16.115][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:16.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:16.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:16.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:16.119][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:16.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:16.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:16.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:16.123][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:16.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:16.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:16.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:16.126][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:16.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:16.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:16.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:16.130][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:16.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:16.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:16.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:16.134][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:16.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:16.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:16.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:16.137][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:16.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:16.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:16.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:16.141][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:16.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:16.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:16.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:16.145][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:16.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:16.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:16.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:16.148][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:16.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:16.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:16.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:16.152][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:16.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:16.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:16.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:16.155][self$createEntryFromContent] Accession numbers: 65576.
biodb.TRACE[2025-07-26 16:02:16.156][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:16.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:16.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:16.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:16.160][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:16.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:16.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:16.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:16.164][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:16.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:16.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:16.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:16.167][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:16.168][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:16.169][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:16.173][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:16.174][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:16.175][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:16.176][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-26 16:02:16.177][private$loadEntries] Creating entries from ids [1]: "66352".
biodb.DEBUG[2025-07-26 16:02:16.178][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-26 16:02:16.179][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-26 16:02:16.184][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/66352.xml.
biodb.DEBUG[2025-07-26 16:02:16.185][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-26 16:02:16.186][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-26 16:02:16.187][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-26 16:02:16.188][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:16.189][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:16.190][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:16.194][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:16.195][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:16.196][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:16.196][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:16.198][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:16.199][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:16.200][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:16.201][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:16.202][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:16.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:16.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:16.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:16.206][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:16.207][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:16.208][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:16.209][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:16.210][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:16.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:16.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:16.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:16.214][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:16.215][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:16.216][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:16.216][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:16.218][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:16.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:16.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:16.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:16.221][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:16.222][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:16.223][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:16.224][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:16.225][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:16.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:16.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:16.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:16.229][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:16.230][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:16.231][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:16.232][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:16.233][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:16.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:16.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:16.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:16.236][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:16.237][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:16.238][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:16.239][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:16.240][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-26 16:02:16.241][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:16.242][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:16.243][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:16.244][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-26 16:02:16.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:16.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:16.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:16.248][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:16.249][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:16.250][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:16.251][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:16.252][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:16.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:16.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:16.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:16.256][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:16.256][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:16.257][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:16.258][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:16.259][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:16.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:16.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:16.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:16.263][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-26 16:02:16.264][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:16.265][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:16.266][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:16.267][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-26 16:02:16.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:16.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:16.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:16.271][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:16.272][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:16.273][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:16.274][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:16.275][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:16.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:16.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:16.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:16.279][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:16.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:16.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:16.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:16.282][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:16.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:16.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:16.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:16.286][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:16.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:16.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:16.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:16.290][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:16.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:16.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:16.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:16.293][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:16.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:16.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:16.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:16.297][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:16.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:16.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:16.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:16.301][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:16.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:16.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:16.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:16.304][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:16.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:16.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:16.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:16.308][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:16.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:16.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:16.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:16.312][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:16.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:16.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:16.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:16.315][self$createEntryFromContent] Accession numbers: 66352.
biodb.TRACE[2025-07-26 16:02:16.317][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:16.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:16.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:16.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:16.320][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:16.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:16.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:16.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:16.329][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:16.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:16.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:16.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:16.333][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:16.334][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:16.335][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:16.339][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:16.340][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:16.341][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:16.342][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-26 16:02:16.343][private$loadEntries] Creating entries from ids [1]: "67567".
biodb.DEBUG[2025-07-26 16:02:16.344][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-26 16:02:16.345][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-26 16:02:16.350][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/67567.xml.
biodb.DEBUG[2025-07-26 16:02:16.350][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-26 16:02:16.352][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-26 16:02:16.353][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-26 16:02:16.354][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:16.355][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:16.356][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:16.360][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:16.361][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:16.361][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:16.362][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:16.364][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:16.365][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:16.366][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:16.367][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:16.368][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:16.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:16.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:16.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:16.372][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:16.373][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:16.374][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:16.374][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:16.376][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:16.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:16.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:16.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:16.379][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:16.380][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:16.381][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:16.382][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:16.383][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:16.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:16.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:16.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:16.387][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:16.388][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:16.389][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:16.389][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:16.391][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:16.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:16.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:16.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:16.394][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:16.395][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:16.396][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:16.397][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:16.398][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:16.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:16.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:16.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:16.402][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:16.403][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:16.404][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:16.404][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:16.406][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-26 16:02:16.406][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:16.407][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:16.408][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:16.409][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-26 16:02:16.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:16.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:16.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:16.413][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:16.414][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:16.415][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:16.416][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:16.417][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:16.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:16.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:16.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:16.420][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:16.421][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:16.422][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:16.423][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:16.424][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:16.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:16.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:16.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:16.428][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-26 16:02:16.429][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:16.430][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:16.431][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:16.432][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-26 16:02:16.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:16.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:16.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:16.436][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:16.437][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:16.438][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:16.438][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:16.440][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:16.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:16.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:16.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:16.443][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:16.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:16.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:16.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:16.447][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:16.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:16.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:16.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:16.451][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:16.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:16.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:16.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:16.454][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:16.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:16.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:16.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:16.458][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:16.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:16.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:16.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:16.462][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:16.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:16.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:16.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:16.465][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:16.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:16.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:16.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:16.469][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:16.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:16.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:16.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:16.473][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:16.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:16.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:16.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:16.477][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:16.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:16.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:16.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:16.480][self$createEntryFromContent] Accession numbers: 67567.
biodb.TRACE[2025-07-26 16:02:16.481][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:16.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:16.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:16.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:16.485][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:16.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:16.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:16.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:16.489][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:16.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:16.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:16.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:16.492][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:16.493][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:16.494][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:16.498][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:16.499][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:16.500][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:16.501][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-26 16:02:16.502][private$loadEntries] Creating entries from ids [1]: "67693".
biodb.DEBUG[2025-07-26 16:02:16.502][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-26 16:02:16.504][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-26 16:02:16.508][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/67693.xml.
biodb.DEBUG[2025-07-26 16:02:16.509][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-26 16:02:16.510][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-26 16:02:16.511][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-26 16:02:16.513][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:16.513][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:16.514][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:16.518][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:16.519][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:16.520][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:16.521][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:16.523][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:16.524][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:16.525][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:16.526][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:16.527][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:16.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:16.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:16.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:16.531][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:16.532][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:16.533][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:16.533][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:16.535][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:16.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:16.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:16.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:16.538][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:16.539][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:16.540][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:16.541][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:16.542][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:16.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:16.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:16.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:16.546][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:16.547][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:16.548][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:16.549][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:16.550][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:16.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:16.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:16.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:16.553][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:16.554][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:16.555][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:16.556][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:16.557][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:16.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:16.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:16.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:16.561][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:16.562][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:16.563][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:16.564][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:16.565][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-26 16:02:16.566][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:16.567][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:16.568][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:16.569][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-26 16:02:16.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:16.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:16.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:16.573][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:16.574][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:16.574][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:16.575][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:16.581][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:16.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:16.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:16.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:16.586][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:16.587][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:16.587][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:16.588][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:16.590][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:16.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:16.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:16.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:16.593][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-26 16:02:16.594][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:16.595][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:16.596][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:16.597][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-26 16:02:16.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:16.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:16.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:16.601][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:16.602][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:16.603][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:16.604][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:16.605][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:16.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:16.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:16.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:16.608][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:16.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:16.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:16.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:16.612][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:16.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:16.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:16.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:16.616][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:16.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:16.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:16.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:16.619][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:16.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:16.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:16.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:16.623][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:16.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:16.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:16.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:16.626][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:16.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:16.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:16.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:16.630][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:16.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:16.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:16.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:16.634][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:16.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:16.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:16.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:16.637][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:16.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:16.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:16.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:16.641][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:16.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:16.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:16.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:16.645][self$createEntryFromContent] Accession numbers: 67693.
biodb.TRACE[2025-07-26 16:02:16.646][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:16.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:16.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:16.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:16.649][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:16.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:16.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:16.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:16.653][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:16.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:16.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:16.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:16.657][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:16.657][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:16.658][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:16.662][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:16.663][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:16.664][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:16.665][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-26 16:02:16.666][private$loadEntries] Creating entries from ids [1]: "67700".
biodb.DEBUG[2025-07-26 16:02:16.667][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-26 16:02:16.668][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-26 16:02:16.672][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/67700.xml.
biodb.DEBUG[2025-07-26 16:02:16.673][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-26 16:02:16.674][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-26 16:02:16.675][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-26 16:02:16.677][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:16.677][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:16.678][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:16.682][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:16.683][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:16.684][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:16.685][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:16.687][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:16.688][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:16.689][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:16.690][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:16.691][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:16.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:16.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:16.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:16.694][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:16.695][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:16.696][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:16.697][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:16.698][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:16.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:16.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:16.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:16.702][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:16.703][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:16.704][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:16.705][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:16.706][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:16.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:16.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:16.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:16.710][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:16.711][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:16.712][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:16.713][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:16.714][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:16.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:16.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:16.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:16.718][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:16.719][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:16.719][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:16.720][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:16.721][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:16.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:16.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:16.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:16.725][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:16.726][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:16.727][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:16.728][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:16.729][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-26 16:02:16.730][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:16.731][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:16.732][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:16.733][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-26 16:02:16.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:16.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:16.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:16.737][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:16.738][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:16.739][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:16.739][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:16.741][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:16.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:16.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:16.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:16.744][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:16.745][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:16.746][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:16.747][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:16.748][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:16.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:16.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:16.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:16.752][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-26 16:02:16.753][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:16.754][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:16.755][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:16.756][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-26 16:02:16.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:16.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:16.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:16.760][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:16.761][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:16.762][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:16.763][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:16.764][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:16.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:16.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:16.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:16.768][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:16.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:16.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:16.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:16.771][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:16.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:16.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:16.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:16.775][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:16.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:16.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:16.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:16.779][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:16.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:16.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:16.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:16.782][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:16.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:16.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:16.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:16.786][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:16.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:16.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:16.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:16.790][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:16.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:16.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:16.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:16.794][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:16.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:16.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:16.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:16.797][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:16.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:16.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:16.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:16.801][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:16.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:16.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:16.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:16.805][self$createEntryFromContent] Accession numbers: 67700.
biodb.TRACE[2025-07-26 16:02:16.806][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:16.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:16.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:16.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:16.809][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:16.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:16.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:16.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:16.813][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:16.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:16.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:16.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:16.817][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:16.817][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:16.818][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:16.822][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:16.823][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:16.824][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:16.825][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-26 16:02:16.831][private$loadEntries] Creating entries from ids [1]: "67701".
biodb.DEBUG[2025-07-26 16:02:16.832][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-26 16:02:16.834][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-26 16:02:16.838][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/67701.xml.
biodb.DEBUG[2025-07-26 16:02:16.839][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-26 16:02:16.840][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-26 16:02:16.841][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-26 16:02:16.842][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:16.843][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:16.844][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:16.848][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:16.849][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:16.850][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:16.851][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:16.853][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:16.854][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:16.854][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:16.855][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:16.856][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:16.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:16.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:16.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:16.860][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:16.861][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:16.862][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:16.863][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:16.864][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:16.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:16.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:16.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:16.868][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:16.869][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:16.869][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:16.870][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:16.871][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:16.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:16.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:16.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:16.875][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:16.876][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:16.877][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:16.878][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:16.879][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:16.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:16.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:16.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:16.882][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:16.883][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:16.884][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:16.885][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:16.886][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:16.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:16.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:16.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:16.890][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:16.891][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:16.892][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:16.893][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:16.894][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-26 16:02:16.895][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:16.896][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:16.897][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:16.898][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-26 16:02:16.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:16.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:16.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:16.901][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:16.902][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:16.903][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:16.904][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:16.905][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:16.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:16.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:16.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:16.909][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:16.910][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:16.911][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:16.912][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:16.913][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:16.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:16.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:16.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:16.916][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-26 16:02:16.917][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:16.918][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:16.919][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:16.920][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-26 16:02:16.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:16.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:16.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:16.924][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:16.925][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:16.926][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:16.927][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:16.928][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:16.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:16.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:16.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:16.932][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:16.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:16.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:16.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:16.935][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:16.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:16.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:16.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:16.939][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:16.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:16.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:16.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:16.943][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:16.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:16.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:16.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:16.946][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:16.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:16.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:16.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:16.950][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:16.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:16.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:16.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:16.954][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:16.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:16.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:16.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:16.958][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:16.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:16.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:16.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:16.961][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:16.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:16.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:16.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:16.965][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:16.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:16.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:16.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:16.969][self$createEntryFromContent] Accession numbers: 67701.
biodb.TRACE[2025-07-26 16:02:16.970][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:16.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:16.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:16.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:16.973][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:16.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:16.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:16.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:16.977][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:16.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:16.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:16.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:16.981][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:16.982][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:16.982][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:16.987][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:16.988][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:16.988][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:16.989][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-26 16:02:16.990][private$loadEntries] Creating entries from ids [1]: "67705".
biodb.DEBUG[2025-07-26 16:02:16.991][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-26 16:02:16.992][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-26 16:02:16.996][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/67705.xml.
biodb.DEBUG[2025-07-26 16:02:16.997][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-26 16:02:16.999][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-26 16:02:17.000][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-26 16:02:17.001][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:17.002][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:17.003][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:17.007][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:17.008][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:17.009][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:17.009][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:17.011][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:17.012][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:17.013][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:17.014][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:17.015][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:17.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:17.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:17.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:17.019][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:17.020][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:17.021][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:17.022][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:17.023][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:17.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:17.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:17.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:17.027][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:17.028][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:17.029][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:17.029][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:17.031][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:17.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:17.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:17.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:17.034][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:17.035][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:17.036][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:17.037][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:17.038][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:17.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:17.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:17.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:17.042][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:17.043][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:17.044][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:17.045][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:17.046][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:17.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:17.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:17.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:17.050][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:17.051][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:17.051][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:17.052][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:17.053][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-26 16:02:17.054][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:17.055][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:17.056][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:17.057][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-26 16:02:17.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:17.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:17.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:17.061][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:17.062][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:17.063][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:17.064][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:17.065][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:17.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:17.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:17.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:17.069][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:17.070][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:17.070][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:17.071][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:17.073][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:17.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:17.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:17.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:17.076][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-26 16:02:17.077][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:17.083][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:17.084][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:17.086][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-26 16:02:17.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:17.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:17.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:17.090][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:17.091][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:17.092][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:17.093][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:17.094][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:17.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:17.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:17.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:17.098][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:17.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:17.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:17.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:17.102][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:17.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:17.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:17.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:17.106][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:17.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:17.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:17.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:17.109][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:17.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:17.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:17.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:17.113][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:17.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:17.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:17.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:17.117][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:17.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:17.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:17.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:17.121][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:17.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:17.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:17.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:17.125][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:17.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:17.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:17.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:17.128][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:17.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:17.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:17.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:17.132][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:17.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:17.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:17.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:17.135][self$createEntryFromContent] Accession numbers: 67705.
biodb.TRACE[2025-07-26 16:02:17.136][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:17.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:17.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:17.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:17.140][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:17.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:17.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:17.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:17.144][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:17.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:17.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:17.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:17.147][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:17.148][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:17.149][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:17.153][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:17.154][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:17.155][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:17.156][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-26 16:02:17.157][private$loadEntries] Creating entries from ids [1]: "75265".
biodb.DEBUG[2025-07-26 16:02:17.157][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-26 16:02:17.159][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-26 16:02:17.162][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/75265.xml.
biodb.DEBUG[2025-07-26 16:02:17.163][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-26 16:02:17.164][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-26 16:02:17.165][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-26 16:02:17.167][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:17.168][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:17.169][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:17.172][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:17.173][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:17.174][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:17.175][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:17.177][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:17.178][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:17.179][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:17.180][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:17.181][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:17.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:17.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:17.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:17.184][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:17.185][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:17.186][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:17.187][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:17.188][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:17.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:17.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:17.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:17.192][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:17.193][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:17.194][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:17.195][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:17.196][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:17.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:17.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:17.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:17.200][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:17.201][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:17.202][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:17.203][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:17.204][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:17.205][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:17.206][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:17.206][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:17.208][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:17.208][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:17.209][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:17.210][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:17.211][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-26 16:02:17.212][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:17.213][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:17.214][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:17.215][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-26 16:02:17.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:17.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:17.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:17.219][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:17.220][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:17.221][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:17.222][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:17.223][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:17.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:17.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:17.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:17.227][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:17.228][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:17.228][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:17.229][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:17.231][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:17.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:17.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:17.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:17.234][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-26 16:02:17.235][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:17.236][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:17.237][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:17.238][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-26 16:02:17.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:17.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:17.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:17.242][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:17.243][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:17.244][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:17.245][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:17.246][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:17.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:17.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:17.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:17.249][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:17.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:17.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:17.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:17.253][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:17.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:17.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:17.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:17.257][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:17.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:17.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:17.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:17.261][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:17.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:17.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:17.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:17.264][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:17.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:17.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:17.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:17.268][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:17.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:17.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:17.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:17.272][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:17.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:17.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:17.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:17.275][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:17.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:17.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:17.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:17.279][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:17.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:17.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:17.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:17.283][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:17.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:17.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:17.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:17.287][self$createEntryFromContent] Accession numbers: 75265.
biodb.TRACE[2025-07-26 16:02:17.288][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:17.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:17.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:17.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:17.291][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:17.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:17.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:17.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:17.295][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:17.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:17.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:17.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:17.299][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:17.299][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:17.300][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:17.304][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:17.305][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:17.306][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:17.307][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-26 16:02:17.308][private$loadEntries] Creating entries from ids [1]: "77370".
biodb.DEBUG[2025-07-26 16:02:17.309][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-26 16:02:17.310][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-26 16:02:17.314][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/77370.xml.
biodb.DEBUG[2025-07-26 16:02:17.315][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-26 16:02:17.316][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-26 16:02:17.317][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-26 16:02:17.318][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:17.319][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:17.320][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:17.324][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:17.325][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:17.326][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:17.327][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:17.329][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:17.330][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:17.336][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:17.337][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:17.338][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:17.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:17.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:17.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:17.342][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:17.343][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:17.344][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:17.345][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:17.346][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:17.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:17.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:17.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:17.350][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:17.351][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:17.352][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:17.352][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:17.353][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:17.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:17.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:17.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:17.357][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:17.358][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:17.359][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:17.360][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:17.361][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:17.362][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:17.363][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:17.364][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:17.365][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:17.366][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:17.367][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:17.367][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:17.368][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-26 16:02:17.369][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:17.370][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:17.371][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:17.372][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-26 16:02:17.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:17.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:17.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:17.376][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:17.377][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:17.378][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:17.379][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:17.380][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:17.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:17.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:17.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:17.383][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:17.384][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:17.385][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:17.386][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:17.387][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:17.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:17.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:17.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:17.391][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-26 16:02:17.392][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:17.393][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:17.394][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:17.395][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-26 16:02:17.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:17.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:17.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:17.398][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:17.399][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:17.400][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:17.401][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:17.402][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:17.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:17.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:17.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:17.406][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:17.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:17.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:17.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:17.409][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:17.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:17.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:17.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:17.413][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:17.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:17.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:17.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:17.417][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:17.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:17.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:17.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:17.420][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:17.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:17.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:17.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:17.424][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:17.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:17.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:17.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:17.428][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:17.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:17.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:17.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:17.431][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:17.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:17.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:17.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:17.435][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:17.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:17.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:17.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:17.439][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:17.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:17.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:17.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:17.443][self$createEntryFromContent] Accession numbers: 77370.
biodb.TRACE[2025-07-26 16:02:17.444][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:17.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:17.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:17.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:17.447][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:17.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:17.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:17.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:17.451][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:17.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:17.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:17.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:17.455][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:17.456][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:17.456][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:17.461][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:17.462][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:17.462][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:17.463][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-26 16:02:17.464][private$loadEntries] Creating entries from ids [1]: "79074".
biodb.DEBUG[2025-07-26 16:02:17.465][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-26 16:02:17.467][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-26 16:02:17.470][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/79074.xml.
biodb.DEBUG[2025-07-26 16:02:17.471][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-26 16:02:17.473][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-26 16:02:17.474][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-26 16:02:17.475][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:17.476][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:17.477][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:17.481][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:17.482][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:17.483][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:17.484][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:17.486][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:17.487][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:17.487][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:17.488][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:17.490][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:17.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:17.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:17.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:17.493][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:17.494][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:17.495][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:17.496][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:17.497][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:17.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:17.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:17.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:17.501][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:17.502][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:17.503][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:17.504][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:17.505][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:17.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:17.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:17.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:17.509][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:17.510][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:17.511][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:17.512][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:17.513][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:17.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:17.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:17.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:17.516][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:17.517][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:17.518][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:17.519][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:17.520][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:17.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:17.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:17.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:17.524][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:17.525][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:17.526][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:17.527][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:17.528][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-26 16:02:17.529][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:17.530][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:17.531][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:17.532][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-26 16:02:17.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:17.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:17.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:17.536][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:17.537][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:17.537][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:17.538][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:17.539][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:17.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:17.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:17.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:17.543][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:17.544][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:17.545][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:17.546][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:17.547][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:17.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:17.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:17.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:17.551][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-26 16:02:17.552][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:17.553][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:17.554][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:17.555][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-26 16:02:17.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:17.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:17.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:17.558][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:17.559][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:17.560][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:17.561][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:17.562][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:17.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:17.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:17.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:17.566][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:17.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:17.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:17.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:17.570][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:17.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:17.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:17.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:17.573][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:17.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:17.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:17.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:17.577][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:17.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:17.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:17.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:17.586][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:17.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:17.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:17.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:17.590][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:17.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:17.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:17.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:17.594][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:17.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:17.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:17.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:17.598][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:17.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:17.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:17.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:17.601][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:17.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:17.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:17.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:17.605][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:17.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:17.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:17.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:17.608][self$createEntryFromContent] Accession numbers: 79074.
biodb.TRACE[2025-07-26 16:02:17.609][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:17.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:17.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:17.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:17.613][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:17.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:17.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:17.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:17.617][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:17.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:17.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:17.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:17.620][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:17.621][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:17.622][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:17.626][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:17.627][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:17.628][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:17.628][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-26 16:02:17.629][private$loadEntries] Creating entries from ids [1]: "79302".
biodb.DEBUG[2025-07-26 16:02:17.630][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-26 16:02:17.632][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-26 16:02:17.636][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/79302.xml.
biodb.DEBUG[2025-07-26 16:02:17.637][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-26 16:02:17.638][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-26 16:02:17.639][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-26 16:02:17.640][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:17.641][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:17.642][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:17.646][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:17.647][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:17.648][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:17.648][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:17.650][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:17.651][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:17.652][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:17.653][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:17.654][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:17.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:17.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:17.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:17.658][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:17.659][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:17.660][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:17.661][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:17.662][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:17.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:17.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:17.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:17.665][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:17.666][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:17.667][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:17.668][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:17.669][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:17.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:17.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:17.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:17.673][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:17.674][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:17.675][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:17.676][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:17.677][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:17.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:17.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:17.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:17.680][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:17.681][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:17.682][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:17.683][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:17.684][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:17.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:17.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:17.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:17.688][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:17.689][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:17.690][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:17.691][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:17.692][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-26 16:02:17.693][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:17.694][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:17.695][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:17.696][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-26 16:02:17.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:17.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:17.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:17.699][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:17.700][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:17.701][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:17.702][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:17.703][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:17.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:17.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:17.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:17.707][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:17.708][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:17.709][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:17.710][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:17.711][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:17.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:17.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:17.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:17.715][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-26 16:02:17.716][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:17.716][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:17.717][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:17.718][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-26 16:02:17.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:17.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:17.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:17.722][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:17.723][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:17.724][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:17.725][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:17.726][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:17.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:17.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:17.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:17.730][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:17.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:17.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:17.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:17.733][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:17.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:17.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:17.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:17.737][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:17.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:17.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:17.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:17.741][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:17.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:17.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:17.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:17.745][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:17.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:17.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:17.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:17.748][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:17.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:17.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:17.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:17.752][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:17.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:17.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:17.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:17.756][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:17.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:17.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:17.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:17.759][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:17.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:17.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:17.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:17.763][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:17.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:17.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:17.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:17.767][self$createEntryFromContent] Accession numbers: 79302.
biodb.TRACE[2025-07-26 16:02:17.768][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:17.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:17.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:17.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:17.771][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:17.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:17.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:17.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:17.775][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:17.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:17.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:17.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:17.779][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:17.780][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:17.780][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:17.785][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:17.786][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:17.786][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:17.787][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-26 16:02:17.788][private$loadEntries] Creating entries from ids [1]: "84164".
biodb.DEBUG[2025-07-26 16:02:17.789][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-26 16:02:17.790][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-26 16:02:17.794][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/84164.xml.
biodb.DEBUG[2025-07-26 16:02:17.795][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-26 16:02:17.796][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-26 16:02:17.797][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-26 16:02:17.799][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:17.800][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:17.800][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:17.804][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:17.805][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:17.806][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:17.807][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:17.809][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:17.810][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:17.811][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:17.812][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:17.813][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:17.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:17.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:17.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:17.817][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:17.818][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:17.818][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:17.819][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:17.820][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:17.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:17.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:17.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:17.824][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:17.825][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:17.826][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:17.827][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:17.828][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:17.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:17.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:17.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:17.837][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:17.838][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:17.839][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:17.840][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:17.841][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:17.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:17.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:17.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:17.845][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:17.846][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:17.847][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:17.848][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:17.849][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:17.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:17.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:17.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:17.853][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:17.854][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:17.854][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:17.855][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:17.856][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-26 16:02:17.857][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:17.858][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:17.859][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:17.860][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-26 16:02:17.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:17.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:17.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:17.864][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:17.865][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:17.866][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:17.866][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:17.868][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:17.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:17.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:17.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:17.871][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:17.872][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:17.873][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:17.874][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:17.875][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:17.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:17.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:17.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:17.879][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-26 16:02:17.880][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:17.881][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:17.881][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:17.883][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-26 16:02:17.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:17.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:17.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:17.886][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:17.887][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:17.888][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:17.889][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:17.890][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:17.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:17.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:17.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:17.894][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:17.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:17.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:17.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:17.897][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:17.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:17.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:17.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:17.901][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:17.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:17.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:17.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:17.905][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:17.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:17.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:17.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:17.908][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:17.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:17.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:17.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:17.912][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:17.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:17.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:17.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:17.915][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:17.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:17.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:17.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:17.919][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:17.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:17.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:17.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:17.923][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:17.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:17.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:17.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:17.927][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:17.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:17.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:17.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:17.930][self$createEntryFromContent] Accession numbers: 84164.
biodb.TRACE[2025-07-26 16:02:17.931][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:17.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:17.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:17.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:17.935][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:17.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:17.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:17.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:17.939][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:17.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:17.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:17.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:17.942][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:17.943][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:17.944][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:17.948][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:17.949][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:17.950][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:17.951][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-26 16:02:17.952][private$loadEntries] Creating entries from ids [1]: "132314".
biodb.DEBUG[2025-07-26 16:02:17.953][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-26 16:02:17.954][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-26 16:02:17.959][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/132314.xml.
biodb.DEBUG[2025-07-26 16:02:17.960][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-26 16:02:17.961][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-26 16:02:17.962][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-26 16:02:17.963][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:17.964][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:17.965][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:17.969][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:17.970][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:17.971][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:17.972][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:17.974][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:17.975][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:17.976][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:17.976][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:17.978][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:17.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:17.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:17.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:17.981][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:17.982][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:17.983][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:17.984][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:17.985][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:17.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:17.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:17.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:17.989][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:17.990][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:17.991][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:17.992][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:17.993][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:17.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:17.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:17.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:17.997][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:17.998][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:17.998][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:17.999][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:18.000][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:18.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:18.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:18.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:18.004][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:18.005][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:18.006][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:18.007][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:18.008][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:18.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:18.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:18.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:18.012][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:18.013][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:18.014][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:18.015][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:18.016][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-26 16:02:18.017][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:18.018][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:18.018][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:18.020][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-26 16:02:18.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:18.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:18.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:18.023][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:18.024][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:18.025][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:18.026][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:18.027][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:18.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:18.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:18.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:18.031][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:18.032][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:18.033][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:18.034][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:18.035][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:18.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:18.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:18.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:18.039][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-26 16:02:18.040][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:18.041][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:18.041][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:18.043][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-26 16:02:18.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:18.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:18.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:18.046][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:18.047][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:18.048][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:18.049][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:18.050][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:18.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:18.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:18.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:18.054][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:18.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:18.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:18.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:18.058][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:18.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:18.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:18.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:18.061][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:18.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:18.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:18.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:18.065][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:18.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:18.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:18.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:18.069][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:18.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:18.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:18.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:18.072][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:18.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:18.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:18.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:18.076][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:18.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:18.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:18.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:18.086][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:18.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:18.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:18.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:18.089][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:18.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:18.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:18.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:18.093][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:18.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:18.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:18.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:18.097][self$createEntryFromContent] Accession numbers: 132314.
biodb.TRACE[2025-07-26 16:02:18.098][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:18.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:18.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:18.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:18.102][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:18.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:18.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:18.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:18.105][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:18.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:18.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:18.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:18.109][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:18.110][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:18.110][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:18.115][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:18.115][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:18.116][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:18.117][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-26 16:02:18.118][private$loadEntries] Creating entries from ids [1]: "132338".
biodb.DEBUG[2025-07-26 16:02:18.119][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-26 16:02:18.120][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-26 16:02:18.125][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/132338.xml.
biodb.DEBUG[2025-07-26 16:02:18.126][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-26 16:02:18.127][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-26 16:02:18.128][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-26 16:02:18.129][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:18.130][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:18.131][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:18.135][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:18.136][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:18.137][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:18.137][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:18.140][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:18.141][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:18.142][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:18.142][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:18.144][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:18.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:18.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:18.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:18.147][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:18.148][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:18.149][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:18.150][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:18.151][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:18.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:18.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:18.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:18.155][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:18.156][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:18.157][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:18.158][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:18.159][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:18.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:18.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:18.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:18.163][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:18.163][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:18.164][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:18.165][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:18.166][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:18.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:18.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:18.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:18.170][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:18.171][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:18.172][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:18.173][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:18.174][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:18.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:18.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:18.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:18.178][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:18.179][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:18.180][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:18.180][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:18.182][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-26 16:02:18.183][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:18.183][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:18.184][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:18.185][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-26 16:02:18.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:18.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:18.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:18.189][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:18.190][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:18.191][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:18.192][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:18.193][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:18.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:18.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:18.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:18.197][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:18.198][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:18.199][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:18.200][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:18.201][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:18.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:18.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:18.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:18.205][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-26 16:02:18.206][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:18.207][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:18.208][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:18.209][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-26 16:02:18.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:18.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:18.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:18.212][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:18.213][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:18.214][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:18.215][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:18.216][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:18.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:18.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:18.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:18.220][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:18.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:18.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:18.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:18.224][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:18.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:18.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:18.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:18.227][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:18.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:18.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:18.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:18.231][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:18.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:18.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:18.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:18.235][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:18.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:18.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:18.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:18.238][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:18.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:18.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:18.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:18.242][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:18.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:18.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:18.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:18.246][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:18.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:18.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:18.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:18.250][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:18.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:18.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:18.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:18.253][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:18.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:18.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:18.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:18.257][self$createEntryFromContent] Accession numbers: 132338.
biodb.TRACE[2025-07-26 16:02:18.258][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:18.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:18.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:18.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:18.262][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:18.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:18.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:18.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:18.265][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:18.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:18.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:18.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:18.269][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:18.270][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:18.271][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:18.275][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:18.276][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:18.277][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:18.277][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-26 16:02:18.278][private$loadEntries] Creating entries from ids [1]: "139019".
biodb.DEBUG[2025-07-26 16:02:18.279][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-26 16:02:18.281][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-26 16:02:18.285][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/139019.xml.
biodb.DEBUG[2025-07-26 16:02:18.286][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-26 16:02:18.287][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-26 16:02:18.288][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-26 16:02:18.289][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:18.290][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:18.291][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:18.295][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:18.296][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:18.297][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:18.298][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:18.300][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:18.301][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:18.302][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:18.302][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:18.304][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:18.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:18.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:18.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:18.307][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:18.308][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:18.309][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:18.310][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:18.311][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:18.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:18.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:18.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:18.315][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:18.316][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:18.317][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:18.318][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:18.319][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:18.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:18.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:18.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:18.322][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:18.323][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:18.324][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:18.325][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:18.326][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:18.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:18.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:18.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:18.335][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:18.337][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:18.338][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:18.339][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:18.340][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:18.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:18.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:18.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:18.344][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:18.345][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:18.345][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:18.346][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:18.347][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-26 16:02:18.349][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:18.350][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:18.350][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:18.351][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-26 16:02:18.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:18.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:18.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:18.355][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:18.356][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:18.357][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:18.358][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:18.359][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:18.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:18.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:18.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:18.363][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:18.364][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:18.364][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:18.365][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:18.367][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:18.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:18.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:18.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:18.370][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-26 16:02:18.371][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:18.372][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:18.373][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:18.374][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-26 16:02:18.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:18.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:18.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:18.378][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:18.379][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:18.380][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:18.380][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:18.381][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:18.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:18.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:18.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:18.385][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:18.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:18.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:18.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:18.389][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:18.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:18.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:18.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:18.392][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:18.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:18.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:18.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:18.396][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:18.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:18.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:18.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:18.400][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:18.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:18.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:18.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:18.403][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:18.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:18.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:18.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:18.407][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:18.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:18.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:18.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:18.411][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:18.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:18.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:18.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:18.415][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:18.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:18.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:18.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:18.418][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:18.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:18.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:18.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:18.422][self$createEntryFromContent] Accession numbers: 139019.
biodb.TRACE[2025-07-26 16:02:18.423][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:18.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:18.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:18.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:18.426][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:18.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:18.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:18.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:18.430][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:18.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:18.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:18.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:18.434][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:18.435][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:18.436][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:18.440][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:18.441][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:18.442][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:18.443][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-26 16:02:18.444][private$loadEntries] Creating entries from ids [1]: "139367".
biodb.DEBUG[2025-07-26 16:02:18.445][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-26 16:02:18.446][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-26 16:02:18.450][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/139367.xml.
biodb.DEBUG[2025-07-26 16:02:18.451][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-26 16:02:18.452][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-26 16:02:18.453][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-26 16:02:18.455][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:18.456][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:18.456][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:18.460][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:18.461][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:18.462][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:18.463][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:18.465][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:18.466][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:18.467][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:18.468][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:18.469][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:18.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:18.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:18.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:18.473][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:18.474][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:18.475][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:18.475][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:18.477][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:18.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:18.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:18.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:18.480][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:18.481][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:18.482][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:18.483][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:18.484][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:18.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:18.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:18.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:18.488][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:18.489][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:18.490][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:18.491][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:18.492][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:18.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:18.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:18.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:18.496][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:18.497][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:18.497][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:18.498][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:18.499][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:18.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:18.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:18.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:18.503][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:18.504][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:18.505][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:18.506][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:18.507][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-26 16:02:18.508][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:18.509][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:18.510][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:18.511][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-26 16:02:18.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:18.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:18.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:18.515][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:18.516][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:18.516][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:18.517][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:18.518][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:18.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:18.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:18.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:18.522][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:18.523][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:18.524][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:18.525][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:18.526][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:18.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:18.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:18.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:18.530][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-26 16:02:18.531][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:18.532][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:18.533][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:18.534][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-26 16:02:18.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:18.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:18.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:18.538][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:18.538][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:18.539][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:18.540][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:18.541][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:18.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:18.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:18.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:18.545][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:18.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:18.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:18.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:18.549][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:18.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:18.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:18.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:18.552][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:18.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:18.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:18.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:18.556][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:18.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:18.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:18.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:18.560][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:18.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:18.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:18.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:18.563][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:18.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:18.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:18.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:18.567][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:18.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:18.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:18.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:18.571][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:18.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:18.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:18.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:18.575][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:18.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:18.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:18.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:18.584][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:18.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:18.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:18.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:18.588][self$createEntryFromContent] Accession numbers: 139367.
biodb.TRACE[2025-07-26 16:02:18.589][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:18.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:18.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:18.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:18.592][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:18.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:18.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:18.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:18.596][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:18.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:18.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:18.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:18.600][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:18.601][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:18.601][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:18.605][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:18.606][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:18.607][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:18.608][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-26 16:02:18.609][private$loadEntries] Creating entries from ids [1]: "145029".
biodb.DEBUG[2025-07-26 16:02:18.610][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-26 16:02:18.611][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-26 16:02:18.615][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/145029.xml.
biodb.DEBUG[2025-07-26 16:02:18.616][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-26 16:02:18.618][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-26 16:02:18.619][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-26 16:02:18.620][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:18.621][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:18.622][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:18.626][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:18.626][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:18.627][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:18.628][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:18.630][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:18.631][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:18.632][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:18.633][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:18.634][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:18.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:18.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:18.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:18.638][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:18.639][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:18.639][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:18.640][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:18.641][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:18.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:18.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:18.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:18.645][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:18.646][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:18.647][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:18.648][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:18.649][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:18.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:18.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:18.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:18.653][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:18.654][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:18.654][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:18.655][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:18.656][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:18.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:18.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:18.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:18.660][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:18.661][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:18.662][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:18.663][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:18.664][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:18.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:18.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:18.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:18.668][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:18.669][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:18.669][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:18.670][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:18.671][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-26 16:02:18.672][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:18.673][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:18.674][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:18.675][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-26 16:02:18.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:18.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:18.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:18.679][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:18.680][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:18.681][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:18.682][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:18.683][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:18.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:18.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:18.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:18.686][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:18.687][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:18.688][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:18.689][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:18.690][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:18.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:18.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:18.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:18.694][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-26 16:02:18.695][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:18.696][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:18.697][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:18.698][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-26 16:02:18.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:18.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:18.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:18.702][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:18.703][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:18.704][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:18.705][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:18.706][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:18.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:18.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:18.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:18.709][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:18.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:18.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:18.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:18.713][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:18.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:18.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:18.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:18.717][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:18.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:18.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:18.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:18.720][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:18.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:18.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:18.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:18.724][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:18.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:18.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:18.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:18.728][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:18.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:18.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:18.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:18.731][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:18.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:18.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:18.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:18.735][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:18.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:18.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:18.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:18.739][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:18.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:18.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:18.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:18.743][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:18.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:18.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:18.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:18.746][self$createEntryFromContent] Accession numbers: 145029.
biodb.TRACE[2025-07-26 16:02:18.747][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:18.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:18.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:18.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:18.751][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:18.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:18.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:18.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:18.755][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:18.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:18.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:18.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:18.758][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:18.759][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:18.760][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:18.764][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:18.765][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:18.766][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:18.767][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-26 16:02:18.768][private$loadEntries] Creating entries from ids [1]: "173077".
biodb.DEBUG[2025-07-26 16:02:18.769][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-26 16:02:18.770][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-26 16:02:18.775][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/173077.xml.
biodb.DEBUG[2025-07-26 16:02:18.777][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-26 16:02:18.778][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-26 16:02:18.779][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-26 16:02:18.780][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:18.781][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:18.782][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:18.786][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:18.787][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:18.788][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:18.788][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:18.791][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:18.792][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:18.792][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:18.793][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:18.794][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:18.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:18.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:18.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:18.798][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:18.799][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:18.800][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:18.801][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:18.802][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:18.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:18.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:18.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:18.806][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:18.807][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:18.808][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:18.809][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:18.810][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:18.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:18.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:18.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:18.814][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:18.814][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:18.815][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:18.816][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:18.817][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:18.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:18.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:18.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:18.821][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:18.822][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:18.823][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:18.824][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:18.825][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:18.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:18.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:18.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:18.829][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:18.839][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:18.840][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:18.841][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:18.842][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-26 16:02:18.844][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:18.845][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:18.846][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:18.847][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-26 16:02:18.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:18.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:18.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:18.851][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:18.852][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:18.853][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:18.854][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:18.855][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:18.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:18.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:18.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:18.859][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:18.860][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:18.861][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:18.862][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:18.863][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:18.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:18.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:18.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:18.867][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-26 16:02:18.868][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:18.869][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:18.870][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:18.871][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-26 16:02:18.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:18.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:18.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:18.875][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:18.876][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:18.877][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:18.878][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:18.879][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:18.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:18.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:18.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:18.883][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:18.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:18.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:18.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:18.887][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:18.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:18.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:18.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:18.891][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:18.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:18.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:18.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:18.894][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:18.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:18.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:18.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:18.898][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:18.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:18.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:18.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:18.902][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:18.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:18.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:18.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:18.905][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:18.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:18.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:18.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:18.909][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:18.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:18.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:18.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:18.913][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:18.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:18.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:18.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:18.916][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:18.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:18.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:18.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:18.920][self$createEntryFromContent] Accession numbers: 173077.
biodb.TRACE[2025-07-26 16:02:18.921][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:18.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:18.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:18.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:18.924][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:18.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:18.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:18.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:18.928][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:18.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:18.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:18.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:18.932][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:18.933][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:18.933][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:18.938][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:18.938][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:18.939][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:18.940][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-26 16:02:18.941][private$loadEntries] Creating entries from ids [1]: "365445".
biodb.DEBUG[2025-07-26 16:02:18.942][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-26 16:02:18.943][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-26 16:02:18.947][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/365445.xml.
biodb.DEBUG[2025-07-26 16:02:18.948][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-26 16:02:18.949][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-26 16:02:18.950][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-26 16:02:18.952][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:18.953][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:18.953][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:18.958][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:18.958][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:18.959][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:18.960][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:18.962][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:18.963][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:18.964][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:18.965][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:18.966][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:18.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:18.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:18.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:18.970][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:18.971][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:18.972][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:18.973][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:18.974][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:18.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:18.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:18.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:18.978][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:18.979][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:18.980][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:18.980][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:18.982][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:18.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:18.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:18.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:18.985][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:18.986][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:18.987][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:18.988][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:18.989][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:18.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:18.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:18.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:18.993][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:18.994][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:18.995][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:18.996][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:18.997][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:18.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:18.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:19.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:19.001][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:19.002][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:19.002][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:19.003][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:19.004][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-26 16:02:19.005][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:19.006][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:19.007][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:19.008][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-26 16:02:19.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:19.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:19.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:19.012][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:19.013][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:19.014][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:19.015][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:19.016][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:19.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:19.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:19.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:19.020][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:19.021][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:19.021][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:19.022][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:19.024][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:19.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:19.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:19.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:19.027][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-26 16:02:19.028][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:19.029][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:19.030][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:19.031][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-26 16:02:19.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:19.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:19.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:19.035][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:19.036][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:19.037][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:19.038][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:19.039][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:19.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:19.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:19.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:19.043][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:19.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:19.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:19.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:19.046][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:19.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:19.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:19.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:19.050][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:19.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:19.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:19.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:19.054][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:19.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:19.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:19.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:19.057][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:19.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:19.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:19.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:19.061][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:19.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:19.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:19.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:19.065][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:19.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:19.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:19.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:19.068][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:19.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:19.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:19.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:19.072][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:19.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:19.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:19.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:19.076][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:19.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:19.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:19.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:19.079][self$createEntryFromContent] Accession numbers: 365445.
biodb.TRACE[2025-07-26 16:02:19.080][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:19.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:19.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:19.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:19.084][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:19.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:19.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:19.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:19.093][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:19.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:19.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:19.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:19.097][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:19.098][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:19.099][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:19.103][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:19.104][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:19.105][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:19.106][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-26 16:02:19.107][private$loadEntries] Creating entries from ids [1]: "32151".
biodb.DEBUG[2025-07-26 16:02:19.108][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-26 16:02:19.109][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-26 16:02:19.113][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/32151.xml.
biodb.DEBUG[2025-07-26 16:02:19.114][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-26 16:02:19.115][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-26 16:02:19.116][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-26 16:02:19.117][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:19.118][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:19.119][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:19.123][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:19.124][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:19.124][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:19.125][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:19.127][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:19.128][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:19.129][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:19.130][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:19.131][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:19.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:19.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:19.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:19.135][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:19.136][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:19.137][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:19.137][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:19.139][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:19.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:19.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:19.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:19.142][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:19.143][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:19.144][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:19.145][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:19.146][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:19.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:19.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:19.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:19.150][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:19.151][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:19.152][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:19.153][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:19.154][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:19.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:19.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:19.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:19.157][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:19.158][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:19.159][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:19.160][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:19.161][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:19.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:19.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:19.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:19.165][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:19.166][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:19.167][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:19.168][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:19.169][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-26 16:02:19.170][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:19.171][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:19.172][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:19.173][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-26 16:02:19.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:19.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:19.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:19.176][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:19.177][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:19.178][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:19.179][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:19.180][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:19.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:19.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:19.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:19.184][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:19.185][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:19.186][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:19.187][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:19.188][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:19.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:19.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:19.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:19.192][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-26 16:02:19.193][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:19.193][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:19.194][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:19.195][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-26 16:02:19.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:19.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:19.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:19.199][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:19.200][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:19.201][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:19.202][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:19.203][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:19.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:19.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:19.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:19.207][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:19.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:19.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:19.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:19.211][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:19.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:19.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:19.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:19.214][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:19.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:19.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:19.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:19.218][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:19.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:19.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:19.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:19.222][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:19.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:19.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:19.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:19.225][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:19.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:19.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:19.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:19.229][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:19.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:19.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:19.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:19.233][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:19.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:19.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:19.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:19.237][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:19.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:19.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:19.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:19.240][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:19.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:19.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:19.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:19.244][self$createEntryFromContent] Accession numbers: 32151.
biodb.TRACE[2025-07-26 16:02:19.245][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:19.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:19.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:19.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:19.249][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:19.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:19.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:19.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:19.252][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:19.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:19.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:19.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:19.256][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:19.257][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:19.258][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:19.262][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:19.263][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:19.264][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:19.264][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-26 16:02:19.265][private$loadEntries] Creating entries from ids [1]: "67676".
biodb.DEBUG[2025-07-26 16:02:19.266][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-26 16:02:19.268][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-26 16:02:19.271][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/67676.xml.
biodb.DEBUG[2025-07-26 16:02:19.272][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-26 16:02:19.274][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-26 16:02:19.275][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-26 16:02:19.276][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:19.277][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:19.278][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:19.282][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:19.283][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:19.283][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:19.284][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:19.286][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:19.287][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:19.288][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:19.289][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:19.290][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:19.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:19.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:19.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:19.294][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:19.295][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:19.296][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:19.297][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:19.298][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:19.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:19.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:19.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:19.302][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:19.302][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:19.303][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:19.304][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:19.305][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:19.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:19.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:19.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:19.309][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:19.310][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:19.311][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:19.312][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:19.313][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:19.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:19.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:19.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:19.317][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:19.318][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:19.319][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:19.319][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:19.321][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:19.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:19.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:19.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:19.324][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:19.325][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:19.326][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:19.327][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:19.328][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-26 16:02:19.329][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:19.330][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:19.331][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:19.332][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-26 16:02:19.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:19.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:19.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:19.336][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:19.337][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:19.338][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:19.344][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:19.345][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:19.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:19.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:19.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:19.350][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:19.351][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:19.352][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:19.352][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:19.354][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:19.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:19.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:19.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:19.358][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-26 16:02:19.359][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:19.359][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:19.360][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:19.361][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-26 16:02:19.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:19.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:19.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:19.365][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:19.366][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:19.367][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:19.368][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:19.369][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:19.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:19.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:19.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:19.373][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:19.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:19.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:19.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:19.376][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:19.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:19.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:19.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:19.380][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:19.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:19.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:19.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:19.384][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:19.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:19.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:19.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:19.387][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:19.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:19.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:19.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:19.391][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:19.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:19.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:19.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:19.394][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:19.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:19.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:19.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:19.398][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:19.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:19.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:19.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:19.402][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:19.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:19.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:19.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:19.405][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:19.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:19.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:19.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:19.409][self$createEntryFromContent] Accession numbers: 67676.
biodb.TRACE[2025-07-26 16:02:19.410][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:19.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:19.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:19.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:19.414][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:19.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:19.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:19.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:19.418][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:19.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:19.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:19.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:19.421][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:19.422][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:19.423][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:19.427][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:19.428][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:19.429][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:19.430][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-26 16:02:19.431][private$loadEntries] Creating entries from ids [1]: "69690".
biodb.DEBUG[2025-07-26 16:02:19.431][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-26 16:02:19.433][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-26 16:02:19.436][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/69690.xml.
biodb.DEBUG[2025-07-26 16:02:19.437][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-26 16:02:19.439][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-26 16:02:19.440][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-26 16:02:19.441][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:19.442][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:19.443][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:19.447][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:19.448][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:19.449][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:19.450][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:19.452][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:19.453][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:19.454][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:19.454][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:19.456][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:19.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:19.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:19.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:19.459][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:19.460][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:19.461][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:19.462][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:19.463][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:19.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:19.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:19.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:19.467][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:19.468][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:19.469][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:19.470][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:19.471][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:19.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:19.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:19.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:19.475][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:19.476][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:19.477][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:19.478][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:19.479][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:19.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:19.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:19.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:19.483][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:19.484][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:19.485][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:19.486][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:19.487][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:19.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:19.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:19.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:19.491][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:19.492][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:19.492][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:19.493][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:19.494][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-26 16:02:19.495][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:19.496][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:19.497][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:19.498][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-26 16:02:19.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:19.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:19.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:19.502][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:19.503][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:19.504][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:19.505][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:19.506][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:19.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:19.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:19.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:19.510][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:19.511][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:19.512][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:19.512][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:19.514][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:19.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:19.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:19.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:19.518][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-26 16:02:19.519][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:19.519][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:19.520][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:19.521][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-26 16:02:19.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:19.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:19.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:19.525][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:19.526][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:19.527][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:19.528][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:19.529][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:19.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:19.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:19.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:19.533][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:19.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:19.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:19.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:19.537][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:19.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:19.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:19.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:19.540][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:19.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:19.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:19.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:19.544][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:19.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:19.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:19.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:19.548][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:19.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:19.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:19.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:19.551][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:19.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:19.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:19.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:19.555][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:19.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:19.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:19.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:19.559][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:19.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:19.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:19.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:19.562][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:19.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:19.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:19.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:19.566][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:19.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:19.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:19.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:19.570][self$createEntryFromContent] Accession numbers: 69690.
biodb.TRACE[2025-07-26 16:02:19.571][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:19.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:19.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:19.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:19.575][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:19.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:19.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:19.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:19.578][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:19.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:19.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:19.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:19.582][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:19.583][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:19.584][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:19.588][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:19.589][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:19.589][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:19.595][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-26 16:02:19.597][private$loadEntries] Creating entries from ids [1]: "69734".
biodb.DEBUG[2025-07-26 16:02:19.598][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-26 16:02:19.599][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-26 16:02:19.603][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/69734.xml.
biodb.DEBUG[2025-07-26 16:02:19.604][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-26 16:02:19.605][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-26 16:02:19.607][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-26 16:02:19.608][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:19.609][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:19.610][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:19.614][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:19.615][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:19.616][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:19.616][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:19.618][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:19.619][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:19.620][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:19.621][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:19.622][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:19.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:19.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:19.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:19.626][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:19.627][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:19.628][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:19.629][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:19.630][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:19.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:19.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:19.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:19.633][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:19.634][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:19.635][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:19.636][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:19.637][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:19.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:19.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:19.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:19.641][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:19.642][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:19.643][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:19.644][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:19.645][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:19.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:19.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:19.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:19.648][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:19.649][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:19.650][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:19.651][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:19.652][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:19.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:19.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:19.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:19.656][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:19.657][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:19.658][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:19.659][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:19.660][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-26 16:02:19.661][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:19.662][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:19.662][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:19.664][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-26 16:02:19.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:19.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:19.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:19.667][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:19.668][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:19.669][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:19.670][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:19.671][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:19.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:19.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:19.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:19.675][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:19.676][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:19.677][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:19.677][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:19.679][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:19.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:19.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:19.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:19.682][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-26 16:02:19.683][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:19.684][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:19.685][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:19.686][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-26 16:02:19.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:19.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:19.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:19.690][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:19.691][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:19.692][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:19.693][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:19.694][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:19.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:19.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:19.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:19.697][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:19.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:19.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:19.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:19.701][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:19.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:19.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:19.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:19.705][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:19.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:19.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:19.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:19.709][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:19.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:19.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:19.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:19.712][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:19.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:19.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:19.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:19.716][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:19.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:19.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:19.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:19.720][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:19.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:19.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:19.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:19.724][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:19.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:19.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:19.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:19.727][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:19.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:19.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:19.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:19.731][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:19.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:19.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:19.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:19.735][self$createEntryFromContent] Accession numbers: 69734.
biodb.TRACE[2025-07-26 16:02:19.736][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:19.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:19.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:19.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:19.739][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:19.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:19.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:19.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:19.743][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:19.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:19.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:19.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:19.747][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:19.748][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:19.748][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:19.753][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:19.753][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:19.754][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:19.755][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-26 16:02:19.756][private$loadEntries] Creating entries from ids [1]: "79978".
biodb.DEBUG[2025-07-26 16:02:19.757][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-26 16:02:19.758][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-26 16:02:19.762][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/79978.xml.
biodb.DEBUG[2025-07-26 16:02:19.763][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-26 16:02:19.764][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-26 16:02:19.765][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-26 16:02:19.766][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:19.767][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:19.768][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:19.772][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:19.773][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:19.774][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:19.775][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:19.777][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:19.778][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:19.779][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:19.780][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:19.781][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:19.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:19.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:19.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:19.785][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:19.786][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:19.786][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:19.787][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:19.789][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:19.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:19.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:19.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:19.792][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:19.793][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:19.794][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:19.795][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:19.796][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:19.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:19.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:19.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:19.800][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:19.801][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:19.802][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:19.803][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:19.804][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:19.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:19.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:19.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:19.808][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:19.809][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:19.810][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:19.810][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:19.812][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:19.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:19.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:19.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:19.815][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:19.816][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:19.817][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:19.818][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:19.819][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:19.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:19.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:19.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:19.823][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-26 16:02:19.824][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:19.825][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:19.826][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:19.827][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-26 16:02:19.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:19.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:19.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:19.831][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:19.832][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:19.833][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:19.833][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:19.835][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:19.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:19.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:19.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:19.838][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:19.839][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:19.840][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:19.841][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:19.847][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:19.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:19.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:19.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:19.852][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-26 16:02:19.853][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:19.854][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:19.855][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:19.856][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-26 16:02:19.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:19.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:19.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:19.860][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:19.861][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:19.862][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:19.863][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:19.864][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:19.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:19.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:19.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:19.868][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:19.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:19.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:19.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:19.871][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:19.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:19.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:19.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:19.875][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:19.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:19.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:19.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:19.878][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:19.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:19.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:19.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:19.882][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:19.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:19.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:19.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:19.886][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:19.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:19.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:19.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:19.889][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:19.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:19.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:19.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:19.893][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:19.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:19.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:19.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:19.897][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:19.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:19.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:19.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:19.900][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:19.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:19.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:19.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:19.904][self$createEntryFromContent] Accession numbers: 79978.
biodb.TRACE[2025-07-26 16:02:19.905][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:19.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:19.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:19.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:19.909][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:19.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:19.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:19.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:19.912][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:19.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:19.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:19.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:19.916][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:19.917][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:19.918][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:19.922][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:19.923][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:19.924][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:19.924][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-26 16:02:19.925][private$loadEntries] Creating entries from ids [1]: "88771".
biodb.DEBUG[2025-07-26 16:02:19.926][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-26 16:02:19.928][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-26 16:02:19.931][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/88771.xml.
biodb.DEBUG[2025-07-26 16:02:19.932][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-26 16:02:19.933][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-26 16:02:19.934][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-26 16:02:19.936][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:19.937][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:19.938][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:19.942][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:19.942][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:19.943][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:19.944][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:19.946][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:19.947][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:19.948][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:19.949][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:19.950][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:19.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:19.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:19.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:19.954][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:19.955][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:19.956][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:19.957][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:19.958][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:19.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:19.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:19.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:19.962][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:19.963][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:19.963][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:19.964][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:19.966][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:19.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:19.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:19.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:19.969][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:19.970][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:19.971][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:19.972][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:19.973][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:19.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:19.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:19.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:19.977][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:19.978][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:19.979][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:19.980][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:19.981][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:19.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:19.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:19.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:19.985][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:19.986][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:19.986][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:19.987][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:19.988][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-26 16:02:19.989][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:19.990][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:19.991][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:19.992][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-26 16:02:19.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:19.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:19.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:19.996][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:19.997][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:19.998][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:19.999][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:20.000][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:20.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:20.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:20.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:20.004][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:20.005][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:20.006][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:20.006][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:20.008][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:20.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:20.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:20.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:20.011][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-26 16:02:20.012][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:20.013][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:20.014][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:20.015][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-26 16:02:20.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:20.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:20.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:20.019][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:20.020][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:20.021][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:20.022][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:20.023][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:20.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:20.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:20.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:20.027][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:20.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:20.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:20.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:20.030][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:20.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:20.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:20.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:20.034][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:20.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:20.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:20.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:20.038][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:20.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:20.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:20.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:20.041][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:20.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:20.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:20.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:20.045][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:20.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:20.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:20.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:20.049][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:20.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:20.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:20.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:20.053][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:20.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:20.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:20.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:20.056][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:20.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:20.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:20.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:20.060][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:20.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:20.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:20.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:20.064][self$createEntryFromContent] Accession numbers: 88771.
biodb.TRACE[2025-07-26 16:02:20.065][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:20.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:20.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:20.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:20.068][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:20.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:20.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:20.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:20.072][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:20.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:20.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:20.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:20.076][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:20.077][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:20.077][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:20.082][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:20.082][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:20.083][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:20.084][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:20.085][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:20.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:20.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:20.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:20.089][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:20.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:20.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:20.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:20.098][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:20.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:20.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:20.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:20.102][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:20.103][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:20.104][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:20.108][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:20.109][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:20.110][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:20.111][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:20.112][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:20.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:20.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:20.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:20.115][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:20.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:20.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:20.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:20.119][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:20.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:20.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:20.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:20.123][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-07-26 16:02:20.124][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:20.125][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:20.126][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:20.130][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:20.131][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:20.132][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:20.132][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:20.133][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:20.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:20.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:20.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:20.137][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:20.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:20.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:20.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:20.141][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:20.142][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-07-26 16:02:20.142][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-26 16:02:20.143][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-26 16:02:20.144][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:20.145][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:20.146][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:20.147][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:20.148][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:20.149][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:20.150][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:20.151][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:20.151][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:20.152][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:20.153][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:20.154][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:20.155][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:20.156][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:20.157][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:20.158][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-26 16:02:20.159][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:20.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:20.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:20.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:20.162][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:20.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:20.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:20.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:20.166][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:20.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:20.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:20.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:20.170][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2025-07-26 16:02:20.171][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:20.172][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:20.172][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:20.176][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:20.177][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:20.178][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:20.179][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:20.180][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:20.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:20.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:20.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:20.184][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:20.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:20.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:20.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:20.187][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:20.188][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-07-26 16:02:20.189][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-26 16:02:20.190][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-26 16:02:20.191][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:20.192][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:20.193][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:20.194][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:20.194][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:20.195][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:20.196][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:20.197][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:20.198][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:20.199][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:20.200][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:20.201][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:20.202][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:20.203][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:20.204][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:20.205][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-26 16:02:20.206][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:20.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:20.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:20.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:20.209][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:20.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:20.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:20.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:20.213][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:20.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:20.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:20.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:20.217][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [91601].
biodb.DEBUG[2025-07-26 16:02:20.218][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:20.219][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:20.220][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:20.224][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:20.225][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:20.225][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:20.226][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:20.227][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:20.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:20.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:20.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:20.231][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:20.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:20.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:20.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:20.235][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:20.236][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-07-26 16:02:20.236][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-26 16:02:20.237][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-26 16:02:20.238][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:20.239][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:20.240][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:20.241][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:20.242][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:20.243][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:20.244][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:20.245][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:20.246][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:20.246][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:20.247][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:20.248][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:20.249][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:20.250][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:20.251][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:20.252][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-26 16:02:20.253][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:20.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:20.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:20.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:20.257][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:20.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:20.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:20.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:20.260][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:20.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:20.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:20.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:20.264][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [95147].
biodb.DEBUG[2025-07-26 16:02:20.265][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-07-26 16:02:20.266][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-07-26 16:02:20.268][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:20.269][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:20.270][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:20.274][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:20.274][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:20.275][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:20.276][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-07-26 16:02:20.278][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.1*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-07-26 16:02:20.281][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-07-26 16:02:20.287][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/10aed56c10c2ef392c152ae3e17290c4.content.
sched.DEBUG[2025-07-26 16:02:20.288][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-07-26 16:02:20.293][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:20.294][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:20.295][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:20.299][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:20.300][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:20.301][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:20.302][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:20.303][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:20.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:20.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:20.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:20.306][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:20.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:20.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:20.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:20.310][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:20.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:20.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:20.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:20.314][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:20.314][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:20.315][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:20.319][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:20.320][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:20.321][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:20.322][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:20.323][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:20.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:20.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:20.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:20.326][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:20.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:20.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:20.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:20.330][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:20.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:20.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:20.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:20.334][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:20.335][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:20.336][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:20.339][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:20.340][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:20.347][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:20.348][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:20.349][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:20.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:20.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:20.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:20.354][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:20.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:20.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:20.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:20.357][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:20.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:20.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:20.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:20.361][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:20.362][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:20.363][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:20.367][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:20.368][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:20.369][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:20.369][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:20.370][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:20.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:20.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:20.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:20.374][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:20.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:20.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:20.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:20.378][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:20.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:20.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:20.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:20.381][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-07-26 16:02:20.390][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:20.391][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:20.392][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:20.399][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:20.400][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:20.401][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:20.402][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:20.404][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:20.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:20.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:20.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:20.408][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:20.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:20.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:20.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:20.413][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:20.414][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-07-26 16:02:20.415][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-26 16:02:20.416][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-26 16:02:20.417][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:20.418][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:20.419][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:20.420][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:20.421][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:20.422][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:20.423][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:20.424][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:20.425][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:20.426][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:20.427][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:20.428][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:20.430][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:20.431][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:20.432][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:20.433][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-26 16:02:20.434][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:20.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:20.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:20.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:20.438][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:20.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:20.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:20.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:20.442][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:20.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:20.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:20.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:20.447][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [636].
biodb.DEBUG[2025-07-26 16:02:20.448][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:20.449][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:20.450][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:20.455][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:20.456][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:20.457][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:20.458][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:20.459][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:20.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:20.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:20.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:20.463][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:20.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:20.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:20.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:20.468][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:20.469][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-07-26 16:02:20.470][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-26 16:02:20.471][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-26 16:02:20.472][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:20.473][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:20.474][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:20.475][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:20.476][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:20.477][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:20.478][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:20.479][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:20.481][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:20.482][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:20.483][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:20.484][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:20.485][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:20.486][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:20.487][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:20.488][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-26 16:02:20.489][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:20.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:20.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:20.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:20.493][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:20.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:20.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:20.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:20.497][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:20.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:20.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:20.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:20.502][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [3014].
biodb.DEBUG[2025-07-26 16:02:20.503][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:20.504][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:20.505][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:20.510][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:20.511][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:20.512][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:20.513][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:20.514][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:20.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:20.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:20.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:20.518][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:20.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:20.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:20.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:20.522][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:20.523][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-07-26 16:02:20.524][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-26 16:02:20.525][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-26 16:02:20.526][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:20.527][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:20.528][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:20.529][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:20.530][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:20.531][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:20.532][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:20.533][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:20.534][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:20.535][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:20.536][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:20.537][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:20.538][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:20.539][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:20.540][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:20.541][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-26 16:02:20.542][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:20.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:20.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:20.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:20.546][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:20.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:20.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:20.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:20.550][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:20.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:20.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:20.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:20.555][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [7799].
biodb.DEBUG[2025-07-26 16:02:20.556][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-07-26 16:02:20.557][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-07-26 16:02:20.576][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:20.577][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:20.578][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:20.582][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:20.583][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:20.584][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:20.585][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-07-26 16:02:20.588][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.1*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-07-26 16:02:20.590][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-07-26 16:02:20.597][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/10aed56c10c2ef392c152ae3e17290c4.content.
sched.DEBUG[2025-07-26 16:02:20.598][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-07-26 16:02:20.604][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:20.605][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:20.606][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:20.610][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:20.611][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:20.612][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:20.613][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:20.614][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:20.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:20.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:20.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:20.618][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:20.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:20.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:20.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:20.623][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:20.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:20.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:20.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:20.627][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:20.628][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:20.628][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:20.645][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:20.646][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:20.647][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:20.648][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:20.650][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:20.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:20.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:20.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:20.654][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:20.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:20.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:20.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:20.658][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:20.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:20.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:20.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:20.662][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:20.662][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:20.663][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:20.667][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:20.668][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:20.669][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:20.670][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:20.671][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:20.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:20.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:20.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:20.675][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:20.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:20.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:20.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:20.679][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:20.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:20.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:20.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:20.683][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:20.683][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:20.684][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:20.688][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:20.689][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:20.690][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:20.691][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:20.692][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:20.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:20.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:20.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:20.695][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:20.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:20.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:20.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:20.699][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:20.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:20.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:20.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:20.702][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:20.703][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:20.704][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:20.708][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:20.709][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:20.710][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:20.710][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:20.711][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:20.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:20.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:20.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:20.715][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:20.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:20.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:20.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:20.719][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:20.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:20.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:20.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:20.722][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:20.723][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:20.724][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:20.728][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:20.729][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:20.729][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:20.730][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:20.731][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:20.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:20.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:20.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:20.735][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:20.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:20.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:20.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:20.739][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:20.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:20.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:20.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:20.742][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:20.743][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:20.744][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:20.748][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:20.749][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:20.749][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:20.750][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:20.751][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:20.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:20.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:20.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:20.755][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:20.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:20.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:20.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:20.759][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:20.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:20.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:20.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:20.763][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-07-26 16:02:20.764][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:20.765][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:20.766][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:20.769][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:20.770][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:20.771][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:20.772][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:20.773][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:20.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:20.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:20.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:20.777][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:20.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:20.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:20.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:20.780][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:20.781][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-07-26 16:02:20.782][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-26 16:02:20.783][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-26 16:02:20.784][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:20.785][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:20.786][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:20.787][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:20.788][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:20.789][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:20.790][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:20.790][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:20.791][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:20.792][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:20.793][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:20.794][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:20.795][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:20.796][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:20.797][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:20.798][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-26 16:02:20.799][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:20.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:20.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:20.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:20.802][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:20.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:20.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:20.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:20.806][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:20.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:20.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:20.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:20.810][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [3014].
biodb.DEBUG[2025-07-26 16:02:20.811][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:20.812][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:20.813][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:20.817][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:20.818][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:20.818][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:20.819][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:20.820][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:20.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:20.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:20.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:20.824][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:20.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:20.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:20.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:20.828][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:20.829][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-07-26 16:02:20.830][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-26 16:02:20.830][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-26 16:02:20.831][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:20.832][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:20.833][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:20.834][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:20.835][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:20.836][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:20.837][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:20.838][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:20.839][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:20.840][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:20.841][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:20.841][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:20.842][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:20.843][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:20.844][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:20.845][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-26 16:02:20.846][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:20.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:20.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:20.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:20.850][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:20.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:20.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:20.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:20.853][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:20.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:20.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:20.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:20.857][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [7799].
biodb.DEBUG[2025-07-26 16:02:20.858][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:20.859][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:20.860][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:20.864][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:20.865][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:20.866][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:20.867][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:20.868][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:20.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:20.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:20.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:20.871][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:20.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:20.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:20.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:20.875][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:20.876][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-07-26 16:02:20.877][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-26 16:02:20.878][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-26 16:02:20.879][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:20.880][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:20.881][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:20.882][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:20.882][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:20.888][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:20.889][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:20.890][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:20.892][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:20.893][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:20.894][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:20.895][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:20.896][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:20.897][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:20.898][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:20.898][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-26 16:02:20.899][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:20.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:20.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:20.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:20.903][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:20.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:20.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:20.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:20.907][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:20.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:20.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:20.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:20.911][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [34764].
biodb.DEBUG[2025-07-26 16:02:20.912][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-07-26 16:02:20.913][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-07-26 16:02:20.914][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:20.915][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:20.916][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:20.920][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:20.921][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:20.922][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:20.923][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-07-26 16:02:20.925][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-07-26 16:02:20.927][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-07-26 16:02:20.934][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/c90d0c20ab1b82ab9da517c0299e1056.content.
sched.DEBUG[2025-07-26 16:02:20.935][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-07-26 16:02:20.941][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:20.942][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:20.942][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:20.946][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:20.947][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:20.948][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:20.949][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:20.950][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:20.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:20.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:20.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:20.954][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:20.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:20.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:20.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:20.957][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:20.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:20.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:20.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:20.961][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:20.962][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:20.963][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:20.966][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:20.967][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:20.968][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:20.969][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:20.970][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:20.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:20.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:20.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:20.974][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:20.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:20.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:20.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:20.977][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:20.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:20.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:20.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:20.981][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:20.982][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:20.983][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:20.987][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:20.987][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:20.988][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:20.989][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:20.990][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:20.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:20.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:20.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:20.994][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:20.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:20.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:20.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:20.998][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:20.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:20.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:21.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:21.001][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:21.002][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:21.003][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:21.007][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:21.008][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:21.009][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:21.010][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:21.011][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:21.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:21.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:21.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:21.014][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:21.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:21.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:21.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:21.018][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:21.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:21.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:21.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:21.022][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-07-26 16:02:21.023][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:21.024][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:21.025][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:21.029][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:21.030][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:21.031][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:21.031][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:21.033][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:21.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:21.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:21.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:21.036][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:21.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:21.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:21.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:21.040][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:21.041][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-07-26 16:02:21.042][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-26 16:02:21.043][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-26 16:02:21.044][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:21.045][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:21.046][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:21.046][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:21.047][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:21.048][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:21.049][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:21.050][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:21.051][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:21.052][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:21.053][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:21.054][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:21.055][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:21.056][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:21.057][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:21.057][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-26 16:02:21.058][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:21.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:21.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:21.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:21.062][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:21.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:21.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:21.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:21.066][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:21.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:21.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:21.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:21.070][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [2535].
biodb.DEBUG[2025-07-26 16:02:21.071][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:21.072][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:21.073][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:21.077][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:21.078][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:21.079][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:21.079][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:21.081][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:21.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:21.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:21.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:21.084][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:21.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:21.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:21.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:21.088][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:21.089][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-07-26 16:02:21.090][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-26 16:02:21.091][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-26 16:02:21.092][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:21.092][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:21.093][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:21.094][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:21.095][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:21.096][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:21.097][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:21.098][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:21.099][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:21.100][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:21.101][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:21.102][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:21.103][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:21.104][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:21.104][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:21.105][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-26 16:02:21.106][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:21.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:21.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:21.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:21.110][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:21.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:21.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:21.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:21.114][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:21.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:21.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:21.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:21.118][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2025-07-26 16:02:21.119][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:21.120][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:21.120][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:21.125][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:21.125][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:21.126][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:21.127][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:21.128][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:21.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:21.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:21.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:21.132][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:21.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:21.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:21.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:21.142][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:21.143][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-07-26 16:02:21.144][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-26 16:02:21.146][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-26 16:02:21.147][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:21.147][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:21.148][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:21.149][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:21.150][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:21.151][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:21.152][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:21.153][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:21.154][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:21.155][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:21.156][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:21.157][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:21.158][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:21.159][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:21.160][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:21.160][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-26 16:02:21.161][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:21.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:21.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:21.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:21.165][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:21.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:21.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:21.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:21.169][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:21.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:21.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:21.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:21.173][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [16587].
biodb.DEBUG[2025-07-26 16:02:21.174][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-07-26 16:02:21.174][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-07-26 16:02:21.176][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:21.177][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:21.178][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:21.182][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:21.183][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:21.184][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:21.185][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-07-26 16:02:21.187][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=409.9*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-07-26 16:02:21.189][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-07-26 16:02:21.192][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/633ffa8aab56d260ba52bc860645ac89.content.
sched.DEBUG[2025-07-26 16:02:21.193][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-07-26 16:02:21.196][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:21.196][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:21.197][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:21.201][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:21.202][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:21.203][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:21.204][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:21.205][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:21.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:21.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:21.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:21.209][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:21.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:21.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:21.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:21.212][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:21.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:21.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:21.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:21.216][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:21.217][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:21.218][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:21.222][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:21.222][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:21.223][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:21.224][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:21.225][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:21.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:21.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:21.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:21.229][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:21.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:21.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:21.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:21.233][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:21.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:21.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:21.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:21.236][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:21.237][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:21.238][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:21.242][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:21.243][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:21.243][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:21.244][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:21.245][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:21.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:21.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:21.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:21.249][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:21.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:21.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:21.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:21.253][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:21.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:21.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:21.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:21.256][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:21.257][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:21.258][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:21.262][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:21.263][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:21.264][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:21.265][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:21.266][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:21.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:21.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:21.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:21.269][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:21.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:21.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:21.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:21.273][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:21.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:21.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:21.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:21.277][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:21.278][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:21.278][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:21.282][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:21.283][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:21.284][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:21.285][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:21.286][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:21.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:21.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:21.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:21.290][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:21.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:21.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:21.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:21.293][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:21.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:21.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:21.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:21.297][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-07-26 16:02:21.299][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:21.300][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:21.300][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:21.304][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:21.305][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:21.306][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:21.307][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:21.308][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:21.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:21.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:21.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:21.312][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:21.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:21.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:21.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:21.315][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:21.316][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-07-26 16:02:21.317][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-26 16:02:21.318][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-26 16:02:21.319][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:21.320][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:21.321][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:21.322][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:21.323][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:21.324][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:21.325][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:21.325][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:21.326][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:21.327][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:21.328][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:21.329][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:21.330][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:21.331][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:21.332][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:21.333][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-26 16:02:21.334][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:21.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:21.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:21.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:21.338][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:21.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:21.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:21.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:21.341][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:21.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:21.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:21.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:21.345][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [31303].
biodb.DEBUG[2025-07-26 16:02:21.346][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:21.347][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:21.348][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:21.352][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:21.353][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:21.354][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:21.354][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:21.356][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:21.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:21.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:21.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:21.359][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:21.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:21.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:21.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:21.363][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:21.364][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-07-26 16:02:21.365][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-26 16:02:21.366][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-26 16:02:21.366][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:21.367][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:21.368][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:21.369][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:21.370][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:21.371][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:21.372][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:21.373][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:21.374][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:21.375][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:21.376][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:21.377][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:21.378][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:21.378][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:21.379][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:21.380][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-26 16:02:21.381][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:21.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:21.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:21.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:21.391][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:21.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:21.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:21.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:21.395][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:21.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:21.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:21.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:21.399][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [81767].
biodb.DEBUG[2025-07-26 16:02:21.400][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:21.401][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:21.402][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:21.406][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:21.407][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:21.408][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:21.408][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:21.410][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:21.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:21.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:21.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:21.413][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:21.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:21.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:21.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:21.417][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:21.418][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-07-26 16:02:21.419][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-26 16:02:21.419][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-26 16:02:21.420][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:21.421][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:21.422][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:21.423][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:21.424][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:21.425][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:21.426][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:21.427][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:21.428][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:21.428][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:21.429][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:21.430][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:21.431][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:21.432][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:21.433][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:21.434][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-26 16:02:21.435][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:21.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:21.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:21.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:21.438][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:21.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:21.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:21.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:21.442][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:21.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:21.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:21.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:21.446][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [131378].
biodb.DEBUG[2025-07-26 16:02:21.447][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-07-26 16:02:21.448][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-07-26 16:02:21.464][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:21.465][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:21.466][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:21.470][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:21.470][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:21.471][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:21.472][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-07-26 16:02:21.474][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-07-26 16:02:21.477][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-07-26 16:02:21.478][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/2e865a03592d6effdf242ff63104f35a.content.
sched.DEBUG[2025-07-26 16:02:21.479][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
sched.DEBUG[2025-07-26 16:02:21.482][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-07-26 16:02:21.484][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-07-26 16:02:21.486][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/f0c73645ca32490f91d503a462d812b2.content.
sched.DEBUG[2025-07-26 16:02:21.487][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-07-26 16:02:21.489][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:21.490][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:21.491][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:21.495][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:21.496][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:21.497][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:21.497][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:21.499][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:21.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:21.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:21.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:21.502][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:21.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:21.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:21.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:21.506][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:21.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:21.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:21.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:21.510][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:21.511][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:21.511][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:21.515][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:21.516][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:21.517][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:21.518][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:21.519][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:21.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:21.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:21.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:21.522][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:21.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:21.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:21.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:21.526][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:21.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:21.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:21.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:21.530][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:21.531][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:21.532][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:21.535][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:21.536][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:21.537][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:21.538][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:21.539][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:21.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:21.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:21.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:21.543][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:21.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:21.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:21.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:21.546][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:21.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:21.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:21.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:21.550][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-07-26 16:02:21.552][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:21.552][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:21.553][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:21.557][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:21.558][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:21.559][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:21.560][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:21.561][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:21.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:21.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:21.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:21.564][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:21.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:21.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:21.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:21.568][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:21.569][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-07-26 16:02:21.570][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-26 16:02:21.571][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-26 16:02:21.572][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:21.572][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:21.573][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:21.574][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:21.575][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:21.576][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:21.577][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:21.578][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:21.579][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:21.580][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:21.581][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:21.582][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:21.583][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:21.583][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:21.584][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:21.585][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-26 16:02:21.586][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:21.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:21.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:21.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:21.590][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:21.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:21.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:21.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:21.594][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:21.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:21.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:21.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:21.598][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4648].
biodb.DEBUG[2025-07-26 16:02:21.599][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:21.599][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:21.600][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:21.604][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:21.605][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:21.606][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:21.607][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:21.608][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:21.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:21.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:21.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:21.611][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:21.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:21.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:21.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:21.615][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:21.616][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-07-26 16:02:21.617][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-26 16:02:21.618][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-26 16:02:21.619][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:21.619][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:21.620][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:21.621][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:21.622][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:21.623][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:21.624][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:21.625][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:21.626][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:21.632][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:21.633][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:21.634][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:21.635][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:21.636][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:21.637][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:21.638][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-26 16:02:21.639][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:21.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:21.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:21.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:21.643][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:21.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:21.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:21.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:21.647][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:21.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:21.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:21.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:21.651][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2025-07-26 16:02:21.652][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:21.653][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:21.653][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:21.657][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:21.658][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:21.659][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:21.660][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:21.661][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:21.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:21.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:21.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:21.665][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:21.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:21.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:21.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:21.668][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:21.669][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-07-26 16:02:21.670][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-26 16:02:21.671][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-26 16:02:21.672][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:21.672][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:21.673][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:21.674][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:21.675][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:21.676][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:21.677][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:21.678][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:21.679][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:21.680][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:21.681][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:21.681][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:21.682][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:21.683][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:21.684][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:21.685][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-26 16:02:21.686][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:21.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:21.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:21.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:21.690][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:21.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:21.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:21.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:21.693][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:21.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:21.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:21.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:21.697][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [62447].
biodb.DEBUG[2025-07-26 16:02:21.698][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-07-26 16:02:21.699][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-07-26 16:02:21.701][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:21.702][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:21.703][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:21.707][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:21.708][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:21.708][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:21.709][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-07-26 16:02:21.712][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.29*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-07-26 16:02:21.714][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-07-26 16:02:21.717][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/aad5aa7c63b98774a5df46d96a4e7cac.content.
sched.DEBUG[2025-07-26 16:02:21.718][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-07-26 16:02:21.720][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:21.721][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:21.721][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:21.725][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:21.726][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:21.727][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:21.728][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:21.729][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:21.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:21.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:21.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:21.733][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:21.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:21.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:21.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:21.736][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:21.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:21.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:21.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:21.740][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:21.741][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:21.742][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:21.746][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:21.747][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:21.748][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:21.749][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:21.750][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:21.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:21.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:21.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:21.754][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:21.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:21.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:21.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:21.757][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:21.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:21.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:21.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:21.761][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:21.762][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:21.763][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:21.767][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:21.768][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:21.768][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:21.769][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:21.770][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:21.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:21.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:21.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:21.774][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:21.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:21.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:21.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:21.778][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:21.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:21.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:21.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:21.781][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-07-26 16:02:21.783][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:21.784][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:21.785][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:21.789][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:21.789][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:21.790][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:21.791][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:21.792][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:21.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:21.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:21.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:21.796][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:21.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:21.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:21.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:21.800][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:21.800][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-07-26 16:02:21.801][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-26 16:02:21.802][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-26 16:02:21.803][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:21.804][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:21.805][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:21.806][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:21.807][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:21.808][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:21.809][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:21.810][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:21.810][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:21.811][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:21.812][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:21.813][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:21.814][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:21.815][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:21.816][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:21.817][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-26 16:02:21.818][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:21.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:21.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:21.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:21.822][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:21.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:21.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:21.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:21.825][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:21.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:21.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:21.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:21.829][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2025-07-26 16:02:21.830][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:21.831][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:21.832][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:21.836][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:21.837][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:21.838][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:21.838][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:21.839][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:21.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:21.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:21.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:21.843][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:21.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:21.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:21.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:21.847][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:21.848][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-07-26 16:02:21.849][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-26 16:02:21.849][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-26 16:02:21.850][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:21.851][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:21.852][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:21.853][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:21.854][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:21.855][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:21.856][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:21.857][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:21.858][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:21.859][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:21.859][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:21.860][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:21.861][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:21.862][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:21.863][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:21.864][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-26 16:02:21.865][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:21.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:21.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:21.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:21.869][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:21.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:21.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:21.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:21.877][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:21.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:21.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:21.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:21.882][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [91601].
biodb.DEBUG[2025-07-26 16:02:21.883][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:21.884][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:21.885][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:21.889][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:21.890][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:21.891][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:21.892][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:21.893][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:21.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:21.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:21.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:21.897][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:21.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:21.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:21.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:21.900][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:21.901][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-07-26 16:02:21.902][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-26 16:02:21.903][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-26 16:02:21.904][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:21.904][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:21.905][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:21.906][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:21.907][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:21.908][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:21.909][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:21.910][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:21.911][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:21.912][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:21.913][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:21.913][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:21.914][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:21.915][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:21.916][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:21.917][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-26 16:02:21.918][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:21.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:21.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:21.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:21.922][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:21.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:21.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:21.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:21.925][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:21.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:21.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:21.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:21.929][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [95147].
biodb.DEBUG[2025-07-26 16:02:21.930][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-07-26 16:02:21.931][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-07-26 16:02:21.933][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:21.933][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:21.934][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:21.938][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:21.939][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:21.940][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:21.941][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-07-26 16:02:21.943][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.17*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-07-26 16:02:21.945][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-07-26 16:02:21.949][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/039d0a183be9e894c19f49abb7cadca8.content.
sched.DEBUG[2025-07-26 16:02:21.950][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-07-26 16:02:21.952][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:21.953][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:21.954][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:21.958][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:21.959][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:21.960][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:21.960][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:21.962][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:21.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:21.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:21.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:21.965][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:21.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:21.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:21.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:21.969][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:21.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:21.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:21.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:21.972][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:21.973][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:21.974][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:21.978][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:21.979][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:21.980][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:21.980][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:21.982][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:21.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:21.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:21.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:21.985][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:21.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:21.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:21.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:21.989][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:21.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:21.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:21.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:21.993][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:21.993][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:21.994][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:21.998][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:21.999][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:22.000][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:22.001][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:22.002][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:22.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:22.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:22.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:22.005][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:22.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:22.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:22.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:22.009][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:22.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:22.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:22.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:22.013][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-07-26 16:02:22.014][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:22.015][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:22.016][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:22.020][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:22.021][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:22.022][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:22.022][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:22.023][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:22.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:22.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:22.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:22.027][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:22.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:22.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:22.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:22.031][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:22.032][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-07-26 16:02:22.033][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-26 16:02:22.033][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-26 16:02:22.034][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:22.035][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:22.036][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:22.037][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:22.038][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:22.039][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:22.040][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:22.041][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:22.042][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:22.043][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:22.044][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:22.044][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:22.045][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:22.046][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:22.047][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:22.048][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-26 16:02:22.049][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:22.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:22.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:22.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:22.053][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:22.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:22.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:22.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:22.056][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:22.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:22.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:22.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:22.060][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [636].
biodb.DEBUG[2025-07-26 16:02:22.061][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:22.062][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:22.063][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:22.067][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:22.068][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:22.069][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:22.069][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:22.070][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:22.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:22.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:22.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:22.074][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:22.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:22.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:22.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:22.078][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:22.079][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-07-26 16:02:22.080][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-26 16:02:22.080][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-26 16:02:22.081][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:22.082][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:22.083][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:22.084][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:22.085][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:22.086][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:22.087][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:22.088][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:22.089][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:22.090][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:22.090][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:22.091][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:22.092][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:22.093][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:22.094][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:22.095][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-26 16:02:22.096][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:22.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:22.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:22.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:22.100][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:22.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:22.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:22.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:22.103][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:22.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:22.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:22.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:22.107][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [64199].
biodb.DEBUG[2025-07-26 16:02:22.108][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:22.109][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:22.110][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:22.114][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:22.115][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:22.115][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:22.121][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:22.123][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:22.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:22.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:22.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:22.127][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:22.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:22.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:22.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:22.131][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:22.132][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-07-26 16:02:22.133][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-26 16:02:22.134][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-26 16:02:22.135][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:22.136][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:22.137][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:22.138][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:22.139][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:22.140][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:22.141][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:22.142][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:22.143][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:22.143][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:22.144][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:22.145][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:22.146][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:22.147][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:22.148][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:22.149][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-26 16:02:22.150][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:22.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:22.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:22.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:22.153][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:22.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:22.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:22.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:22.157][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:22.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:22.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:22.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:22.161][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [65648].
biodb.DEBUG[2025-07-26 16:02:22.162][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-07-26 16:02:22.163][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-07-26 16:02:22.179][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:22.180][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:22.181][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:22.184][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:22.185][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:22.186][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:22.187][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-07-26 16:02:22.189][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.3*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-07-26 16:02:22.191][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-07-26 16:02:22.196][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/76cb051f1eabf309f608d38ca52ffd0b.content.
sched.DEBUG[2025-07-26 16:02:22.197][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-07-26 16:02:22.200][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:22.201][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:22.202][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:22.205][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:22.206][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:22.207][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:22.208][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:22.209][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:22.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:22.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:22.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:22.213][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:22.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:22.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:22.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:22.217][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:22.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:22.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:22.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:22.220][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:22.221][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:22.222][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:22.226][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:22.227][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:22.227][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:22.228][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:22.229][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:22.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:22.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:22.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:22.233][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:22.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:22.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:22.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:22.237][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:22.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:22.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:22.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:22.240][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:22.241][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:22.242][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:22.246][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:22.247][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:22.247][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:22.248][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:22.249][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:22.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:22.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:22.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:22.253][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:22.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:22.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:22.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:22.257][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:22.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:22.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:22.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:22.260][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:22.261][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:22.262][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:22.266][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:22.267][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:22.268][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:22.268][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:22.269][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:22.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:22.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:22.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:22.273][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:22.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:22.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:22.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:22.277][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:22.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:22.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:22.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:22.281][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:22.281][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:22.282][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:22.286][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:22.287][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:22.288][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:22.288][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:22.290][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:22.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:22.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:22.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:22.293][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:22.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:22.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:22.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:22.297][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:22.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:22.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:22.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:22.301][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:22.301][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:22.302][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:22.306][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:22.307][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:22.308][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:22.309][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:22.310][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:22.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:22.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:22.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:22.313][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:22.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:22.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:22.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:22.317][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:22.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:22.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:22.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:22.321][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:22.322][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:22.322][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:22.326][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:22.327][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:22.328][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:22.329][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:22.330][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:22.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:22.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:22.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:22.334][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:22.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:22.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:22.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:22.337][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:22.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:22.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:22.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:22.341][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:22.342][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:22.343][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:22.347][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:22.347][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:22.348][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:22.349][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:22.350][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:22.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:22.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:22.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:22.354][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:22.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:22.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:22.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:22.358][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:22.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:22.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:22.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:22.362][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-07-26 16:02:22.369][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:22.370][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:22.371][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:22.375][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:22.376][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:22.377][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:22.377][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:22.379][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:22.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:22.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:22.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:22.382][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:22.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:22.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:22.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:22.386][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:22.387][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-07-26 16:02:22.388][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-26 16:02:22.389][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-26 16:02:22.390][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:22.390][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:22.391][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:22.392][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:22.393][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:22.394][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:22.395][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:22.396][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:22.397][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:22.398][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:22.399][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:22.399][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:22.400][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:22.401][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:22.402][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:22.403][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-26 16:02:22.404][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:22.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:22.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:22.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:22.408][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:22.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:22.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:22.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:22.411][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:22.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:22.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:22.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:22.415][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4648].
biodb.DEBUG[2025-07-26 16:02:22.416][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:22.417][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:22.418][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:22.422][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:22.423][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:22.424][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:22.424][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:22.426][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:22.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:22.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:22.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:22.429][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:22.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:22.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:22.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:22.433][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:22.434][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-07-26 16:02:22.435][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-26 16:02:22.435][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-26 16:02:22.436][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:22.437][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:22.438][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:22.439][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:22.440][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:22.441][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:22.442][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:22.443][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:22.444][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:22.445][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:22.445][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:22.446][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:22.447][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:22.448][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:22.449][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:22.450][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-26 16:02:22.451][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:22.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:22.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:22.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:22.455][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:22.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:22.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:22.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:22.458][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:22.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:22.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:22.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:22.462][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2025-07-26 16:02:22.463][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:22.464][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:22.465][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:22.469][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:22.470][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:22.471][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:22.472][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:22.473][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:22.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:22.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:22.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:22.477][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:22.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:22.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:22.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:22.480][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:22.481][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-07-26 16:02:22.482][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-26 16:02:22.483][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-26 16:02:22.484][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:22.485][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:22.486][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:22.487][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:22.487][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:22.488][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:22.489][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:22.490][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:22.491][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:22.492][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:22.493][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:22.494][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:22.495][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:22.496][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:22.497][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:22.497][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-26 16:02:22.498][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:22.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:22.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:22.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:22.502][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:22.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:22.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:22.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:22.506][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:22.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:22.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:22.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:22.510][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [62447].
biodb.DEBUG[2025-07-26 16:02:22.511][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-07-26 16:02:22.512][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-07-26 16:02:22.513][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:22.514][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:22.515][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:22.519][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:22.520][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:22.521][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:22.522][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-07-26 16:02:22.524][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.2*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-07-26 16:02:22.526][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-07-26 16:02:22.533][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/3d37e3be2f5c6d64498effb7934e924b.content.
sched.DEBUG[2025-07-26 16:02:22.534][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-07-26 16:02:22.540][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:22.541][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:22.542][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:22.546][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:22.547][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:22.547][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:22.548][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:22.549][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:22.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:22.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:22.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:22.553][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:22.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:22.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:22.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:22.557][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:22.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:22.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:22.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:22.561][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:22.561][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:22.562][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:22.566][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:22.567][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:22.568][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:22.569][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:22.570][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:22.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:22.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:22.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:22.573][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:22.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:22.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:22.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:22.577][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:22.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:22.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:22.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:22.581][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:22.582][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:22.583][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:22.587][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:22.587][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:22.588][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:22.589][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:22.590][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:22.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:22.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:22.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:22.594][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:22.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:22.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:22.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:22.598][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:22.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:22.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:22.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:22.601][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:22.602][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:22.603][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:22.607][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:22.608][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:22.609][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:22.610][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:22.617][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:22.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:22.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:22.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:22.622][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:22.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:22.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:22.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:22.626][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:22.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:22.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:22.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:22.629][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:22.630][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:22.631][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:22.635][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:22.636][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:22.637][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:22.638][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:22.639][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:22.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:22.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:22.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:22.642][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:22.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:22.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:22.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:22.646][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:22.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:22.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:22.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:22.650][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:22.650][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:22.651][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:22.655][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:22.656][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:22.657][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:22.658][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:22.659][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:22.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:22.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:22.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:22.662][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:22.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:22.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:22.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:22.666][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:22.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:22.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:22.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:22.670][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:22.670][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:22.671][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:22.675][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:22.676][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:22.677][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:22.677][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:22.678][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:22.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:22.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:22.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:22.682][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:22.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:22.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:22.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:22.686][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:22.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:22.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:22.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:22.689][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:22.690][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:22.691][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:22.695][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:22.696][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:22.696][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:22.697][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:22.698][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:22.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:22.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:22.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:22.702][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:22.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:22.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:22.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:22.706][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:22.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:22.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:22.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:22.709][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:22.710][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:22.711][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:22.715][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:22.716][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:22.716][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:22.717][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:22.718][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:22.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:22.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:22.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:22.722][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:22.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:22.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:22.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:22.726][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:22.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:22.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:22.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:22.730][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:22.730][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:22.731][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:22.735][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:22.736][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:22.737][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:22.738][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:22.739][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:22.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:22.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:22.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:22.742][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:22.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:22.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:22.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:22.746][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:22.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:22.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:22.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:22.750][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:22.751][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:22.751][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:22.755][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:22.756][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:22.757][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:22.758][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:22.759][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:22.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:22.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:22.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:22.763][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:22.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:22.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:22.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:22.766][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:22.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:22.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:22.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:22.770][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:22.771][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:22.772][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:22.775][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:22.776][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:22.777][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:22.778][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:22.779][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:22.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:22.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:22.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:22.783][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:22.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:22.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:22.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:22.786][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:22.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:22.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:22.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:22.790][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:22.791][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:22.792][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:22.795][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:22.796][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:22.797][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:22.798][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:22.799][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:22.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:22.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:22.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:22.803][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:22.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:22.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:22.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:22.806][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:22.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:22.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:22.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:22.810][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:22.811][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:22.812][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:22.815][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:22.816][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:22.817][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:22.818][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:22.819][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:22.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:22.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:22.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:22.823][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:22.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:22.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:22.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:22.826][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:22.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:22.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:22.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:22.830][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:22.831][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:22.832][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:22.836][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:22.836][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:22.837][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:22.838][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:22.839][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:22.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:22.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:22.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:22.843][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:22.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:22.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:22.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:22.846][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:22.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:22.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:22.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:22.850][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:22.851][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:22.852][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:22.861][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:22.862][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:22.863][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:22.864][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:22.865][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:22.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:22.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:22.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:22.869][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:22.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:22.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:22.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:22.873][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:22.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:22.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:22.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:22.876][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:22.877][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:22.878][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:22.882][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:22.883][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:22.883][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:22.884][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:22.885][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:22.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:22.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:22.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:22.889][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:22.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:22.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:22.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:22.893][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:22.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:22.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:22.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:22.896][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:22.897][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:22.898][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:22.901][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:22.902][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:22.903][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:22.904][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:22.905][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:22.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:22.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:22.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:22.909][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:22.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:22.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:22.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:22.912][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:22.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:22.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:22.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:22.916][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:22.917][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:22.917][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:22.921][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:22.922][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:22.923][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:22.924][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:22.925][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:22.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:22.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:22.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:22.928][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:22.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:22.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:22.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:22.932][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:22.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:22.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:22.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:22.936][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:22.936][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:22.937][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:22.941][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:22.942][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:22.943][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:22.943][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:22.944][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:22.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:22.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:22.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:22.948][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:22.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:22.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:22.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:22.952][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:22.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:22.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:22.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:22.955][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:22.956][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:22.957][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:22.961][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:22.962][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:22.962][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:22.963][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:22.964][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:22.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:22.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:22.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:22.968][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:22.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:22.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:22.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:22.972][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:22.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:22.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:22.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:22.975][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:22.976][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:22.977][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:22.981][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:22.982][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:22.982][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:22.983][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:22.984][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:22.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:22.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:22.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:22.988][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:22.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:22.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:22.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:22.992][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:22.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:22.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:22.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:22.995][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:22.996][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:22.997][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:23.001][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:23.002][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:23.002][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:23.003][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:23.004][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:23.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:23.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:23.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:23.008][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:23.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:23.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:23.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:23.012][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:23.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:23.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:23.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:23.015][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:23.016][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:23.017][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:23.021][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:23.022][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:23.022][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:23.023][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:23.024][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:23.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:23.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:23.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:23.028][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:23.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:23.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:23.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:23.032][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:23.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:23.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:23.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:23.035][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:23.036][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:23.037][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:23.041][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:23.042][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:23.043][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:23.044][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:23.045][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:23.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:23.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:23.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:23.048][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:23.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:23.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:23.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:23.052][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:23.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:23.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:23.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:23.056][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:23.057][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:23.057][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:23.061][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:23.062][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:23.063][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:23.064][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:23.065][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:23.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:23.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:23.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:23.069][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:23.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:23.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:23.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:23.072][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:23.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:23.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:23.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:23.076][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:23.077][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:23.078][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:23.082][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:23.083][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:23.083][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:23.084][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:23.085][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:23.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:23.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:23.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:23.089][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:23.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:23.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:23.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:23.099][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:23.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:23.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:23.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:23.103][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:23.104][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:23.105][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:23.109][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:23.110][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:23.111][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:23.112][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:23.113][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:23.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:23.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:23.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:23.117][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:23.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:23.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:23.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:23.120][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:23.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:23.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:23.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:23.124][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:23.125][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:23.125][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:23.129][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:23.130][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:23.131][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:23.132][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:23.133][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:23.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:23.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:23.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:23.137][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:23.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:23.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:23.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:23.140][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:23.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:23.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:23.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:23.144][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:23.145][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:23.145][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:23.149][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:23.150][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:23.151][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:23.152][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:23.153][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:23.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:23.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:23.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:23.157][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:23.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:23.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:23.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:23.160][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:23.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:23.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:23.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:23.164][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-07-26 16:02:23.165][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:23.166][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:23.167][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:23.171][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:23.172][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:23.173][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:23.173][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:23.175][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:23.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:23.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:23.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:23.178][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:23.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:23.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:23.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:23.182][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:23.183][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-07-26 16:02:23.184][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-26 16:02:23.184][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-26 16:02:23.185][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:23.186][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:23.187][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:23.188][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:23.189][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:23.190][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:23.191][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:23.192][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:23.192][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:23.193][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:23.194][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:23.195][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:23.196][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:23.197][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:23.198][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:23.199][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-26 16:02:23.200][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:23.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:23.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:23.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:23.204][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:23.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:23.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:23.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:23.207][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:23.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:23.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:23.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:23.211][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2025-07-26 16:02:23.212][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:23.213][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:23.214][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:23.218][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:23.219][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:23.220][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:23.221][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:23.222][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:23.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:23.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:23.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:23.226][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:23.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:23.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:23.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:23.229][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:23.230][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-07-26 16:02:23.231][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-26 16:02:23.232][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-26 16:02:23.233][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:23.234][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:23.235][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:23.236][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:23.237][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:23.237][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:23.238][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:23.239][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:23.240][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:23.241][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:23.242][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:23.243][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:23.244][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:23.245][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:23.246][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:23.247][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-26 16:02:23.248][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:23.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:23.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:23.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:23.251][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:23.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:23.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:23.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:23.255][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:23.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:23.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:23.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:23.259][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [91601].
biodb.DEBUG[2025-07-26 16:02:23.260][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:23.261][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:23.262][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:23.266][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:23.267][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:23.267][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:23.268][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:23.269][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:23.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:23.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:23.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:23.273][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:23.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:23.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:23.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:23.277][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:23.278][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-07-26 16:02:23.279][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-26 16:02:23.279][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-26 16:02:23.280][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:23.281][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:23.282][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:23.283][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:23.284][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:23.285][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:23.286][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:23.287][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:23.288][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:23.289][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:23.289][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:23.290][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:23.291][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:23.292][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:23.293][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:23.294][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-26 16:02:23.295][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:23.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:23.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:23.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:23.299][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:23.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:23.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:23.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:23.302][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:23.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:23.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:23.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:23.306][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [95147].
biodb.DEBUG[2025-07-26 16:02:23.307][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-07-26 16:02:23.308][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-07-26 16:02:23.310][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:23.311][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:23.312][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:23.316][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:23.317][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:23.317][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:23.318][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-07-26 16:02:23.321][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.1*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-07-26 16:02:23.323][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-07-26 16:02:23.329][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/10aed56c10c2ef392c152ae3e17290c4.content.
sched.DEBUG[2025-07-26 16:02:23.330][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-07-26 16:02:23.336][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:23.336][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:23.337][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:23.347][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:23.348][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:23.349][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:23.350][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:23.352][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:23.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:23.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:23.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:23.355][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:23.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:23.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:23.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:23.359][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:23.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:23.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:23.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:23.363][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:23.364][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:23.364][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:23.368][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:23.369][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:23.370][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:23.371][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:23.372][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:23.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:23.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:23.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:23.376][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:23.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:23.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:23.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:23.379][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:23.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:23.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:23.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:23.383][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:23.384][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:23.384][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:23.388][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:23.389][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:23.390][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:23.391][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:23.392][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:23.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:23.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:23.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:23.396][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:23.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:23.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:23.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:23.399][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:23.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:23.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:23.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:23.403][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:23.404][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:23.404][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:23.408][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:23.409][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:23.410][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:23.411][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:23.412][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:23.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:23.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:23.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:23.415][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:23.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:23.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:23.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:23.419][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:23.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:23.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:23.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:23.423][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-07-26 16:02:23.424][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:23.425][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:23.426][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:23.430][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:23.431][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:23.431][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:23.432][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:23.433][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:23.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:23.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:23.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:23.437][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:23.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:23.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:23.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:23.441][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:23.441][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-07-26 16:02:23.442][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-26 16:02:23.443][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-26 16:02:23.444][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:23.445][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:23.446][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:23.447][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:23.448][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:23.449][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:23.450][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:23.451][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:23.451][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:23.452][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:23.453][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:23.454][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:23.455][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:23.456][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:23.457][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:23.458][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-26 16:02:23.459][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:23.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:23.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:23.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:23.462][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:23.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:23.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:23.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:23.466][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:23.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:23.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:23.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:23.470][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [636].
biodb.DEBUG[2025-07-26 16:02:23.471][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:23.472][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:23.473][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:23.477][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:23.478][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:23.478][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:23.479][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:23.480][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:23.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:23.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:23.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:23.484][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:23.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:23.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:23.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:23.488][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:23.489][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-07-26 16:02:23.490][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-26 16:02:23.490][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-26 16:02:23.491][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:23.492][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:23.493][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:23.494][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:23.495][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:23.496][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:23.497][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:23.498][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:23.499][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:23.500][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:23.500][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:23.501][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:23.502][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:23.503][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:23.504][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:23.505][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-26 16:02:23.506][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:23.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:23.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:23.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:23.510][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:23.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:23.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:23.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:23.513][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:23.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:23.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:23.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:23.517][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [3014].
biodb.DEBUG[2025-07-26 16:02:23.518][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:23.519][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:23.520][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:23.524][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:23.525][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:23.526][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:23.527][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:23.528][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:23.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:23.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:23.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:23.531][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:23.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:23.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:23.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:23.535][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:23.536][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-07-26 16:02:23.537][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-26 16:02:23.538][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-26 16:02:23.539][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:23.540][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:23.541][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:23.541][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:23.542][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:23.543][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:23.544][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:23.545][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:23.546][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:23.547][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:23.548][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-26 16:02:23.549][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:23.550][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:23.551][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:23.551][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:23.552][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-26 16:02:23.553][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:23.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:23.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:23.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:23.557][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:23.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:23.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:23.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:23.561][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:23.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:23.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:23.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:23.565][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [7799].
biodb.DEBUG[2025-07-26 16:02:23.566][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-07-26 16:02:23.566][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2025-07-26 16:02:23.587][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-07-26 16:02:23.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-07-26 16:02:23.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:23.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:23.591][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-07-26 16:02:23.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-07-26 16:02:23.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:23.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:23.595][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-07-26 16:02:23.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-07-26 16:02:23.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:23.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-07-26 16:02:23.602][biodb::testThat]
biodb.INFO [2025-07-26 16:02:23.603][biodb::testThat] Running test function  test_annotateMzValues_additional_fields  (" Additional fields are accepted in annotateMzValues() ").
biodb.INFO [2025-07-26 16:02:23.604][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-07-26 16:02:23.605][biodb::testThat]
biodb.TRACE[2025-07-26 16:02:23.607][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-07-26 16:02:23.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-07-26 16:02:23.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:23.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:23.611][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-07-26 16:02:23.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-07-26 16:02:23.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:23.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:23.615][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-07-26 16:02:23.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-07-26 16:02:23.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:23.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:23.618][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:23.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:23.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:23.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:23.622][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:23.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:23.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:23.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:23.626][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:23.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:23.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:23.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:23.629][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:23.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:23.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:23.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:23.633][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:23.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:23.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:23.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:23.637][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:23.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:23.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:23.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:23.640][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:23.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:23.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:23.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:23.644][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:23.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:23.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:23.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:23.648][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:23.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:23.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:23.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:23.651][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:23.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:23.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:23.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:23.655][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:23.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:23.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:23.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:23.659][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:23.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:23.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:23.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:23.665][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:23.666][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:23.666][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:23.670][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:23.671][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:23.672][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:23.673][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-07-26 16:02:23.676][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-07-26 16:02:23.678][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-07-26 16:02:23.680][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/8fc54eee7e982ce554bee8000d8203f7.content.
sched.DEBUG[2025-07-26 16:02:23.681][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-07-26 16:02:23.683][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:23.683][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:23.684][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:23.688][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:23.689][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:23.690][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:23.691][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:23.692][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:23.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:23.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:23.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:23.696][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:23.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:23.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:23.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:23.699][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:23.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:23.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:23.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
sched.DEBUG[2025-07-26 16:02:23.704][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-07-26 16:02:23.706][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-07-26 16:02:23.708][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/6def615835d7c1dfccd5a5f135bd2f9d.content.
sched.DEBUG[2025-07-26 16:02:23.709][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-07-26 16:02:23.711][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:23.712][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:23.713][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:23.717][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:23.718][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:23.719][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:23.719][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:23.721][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:23.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:23.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:23.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:23.724][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:23.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:23.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:23.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:23.728][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:23.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:23.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:23.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:23.732][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:23.733][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:23.733][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:23.738][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:23.738][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:23.739][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:23.740][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:23.741][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:23.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:23.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:23.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:23.745][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:23.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:23.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:23.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:23.749][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:23.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:23.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:23.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:23.753][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-07-26 16:02:23.754][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:23.755][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:23.756][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:23.760][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:23.761][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:23.762][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:23.762][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:23.764][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:23.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:23.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:23.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:23.767][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:23.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:23.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:23.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:23.771][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:23.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:23.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:23.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:23.775][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:23.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:23.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:23.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:23.778][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:23.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:23.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:23.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:23.782][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:23.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:23.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:23.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:23.786][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:23.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:23.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:23.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:23.790][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:23.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:23.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:23.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:23.793][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:23.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:23.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:23.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:23.797][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:23.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:23.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:23.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:23.801][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:23.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:23.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:23.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:23.804][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:23.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:23.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:23.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:23.808][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:23.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:23.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:23.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:23.812][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:23.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:23.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:23.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:23.815][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:23.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:23.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:23.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:23.819][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:23.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:23.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:23.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:23.823][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:23.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:23.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:23.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:23.826][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:23.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:23.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:23.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:23.836][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-26 16:02:23.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:23.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:23.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:23.840][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-26 16:02:23.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:23.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:23.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:23.844][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:23.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:23.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:23.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:23.848][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:23.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:23.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:23.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:23.851][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:23.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:23.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:23.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:23.855][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:23.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:23.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:23.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:23.859][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-07-26 16:02:23.859][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-07-26 16:02:23.860][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-26 16:02:23.861][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-26 16:02:23.862][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-07-26 16:02:23.863][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:23.864][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:23.865][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:23.866][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:23.866][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:23.867][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:23.868][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:23.869][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:23.870][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:23.871][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:23.872][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:23.873][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:23.874][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:23.875][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:23.875][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:23.876][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:23.877][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:23.878][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:23.879][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:23.880][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:23.881][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:23.882][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:23.883][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:23.883][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:23.884][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:23.885][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:23.886][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:23.887][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:23.888][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:23.889][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:23.890][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:23.891][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:23.892][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:23.893][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:23.893][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:23.894][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:23.895][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-26 16:02:23.896][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:23.897][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:23.898][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:23.899][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:23.900][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:23.901][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:23.901][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:23.902][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:23.903][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:23.904][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:23.905][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:23.906][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:23.907][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:23.908][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:23.909][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:23.910][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:23.910][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:23.911][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:23.912][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:23.913][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:23.914][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:23.915][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:23.916][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:23.917][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:23.918][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:23.919][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:23.919][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:23.920][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:23.921][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:23.922][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:23.923][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:23.924][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:23.925][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:23.926][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:23.927][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:23.928][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:23.928][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:23.929][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:23.930][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:23.931][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:23.932][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:23.933][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:23.934][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:23.935][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:23.936][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:23.937][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:23.938][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:23.938][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-26 16:02:23.939][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:23.940][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:23.941][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:23.942][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:23.943][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:23.944][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:23.945][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:23.946][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:23.947][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:23.948][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:23.949][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:23.949][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-07-26 16:02:23.950][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-07-26 16:02:23.951][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:23.952][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:23.953][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:23.954][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:23.955][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:23.956][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:23.957][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:23.958][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:23.959][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:23.960][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:23.960][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:23.961][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:23.962][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:23.963][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:23.964][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:23.965][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:23.966][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:23.967][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:23.968][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:23.969][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:23.970][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:23.971][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:23.971][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:23.972][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:23.973][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:23.974][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:23.975][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:23.976][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:23.977][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:23.978][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:23.979][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:23.980][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:23.980][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-26 16:02:23.981][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:23.982][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:23.983][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:23.984][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:23.985][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:23.986][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:23.987][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:23.988][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:23.989][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:23.990][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:23.990][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:23.991][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-07-26 16:02:23.992][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:23.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:23.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:23.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:23.996][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:23.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:23.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:23.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:24.000][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:24.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:24.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:24.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:24.004][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:24.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:24.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:24.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:24.007][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:24.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:24.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:24.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:24.011][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:24.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:24.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:24.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:24.015][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:24.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:24.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:24.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:24.018][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:24.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:24.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:24.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:24.022][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:24.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:24.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:24.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:24.026][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:24.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:24.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:24.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:24.030][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:24.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:24.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:24.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:24.033][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:24.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:24.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:24.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:24.037][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:24.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:24.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:24.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:24.041][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:24.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:24.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:24.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:24.045][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:24.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:24.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:24.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:24.048][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:24.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:24.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:24.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:24.052][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:24.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:24.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:24.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:24.056][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:24.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:24.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:24.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:24.060][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:24.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:24.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:24.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:24.063][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:24.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:24.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:24.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:24.067][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:24.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:24.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:24.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:24.231][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:24.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:24.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:24.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:24.235][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:24.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:24.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:24.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:24.238][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:24.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:24.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:24.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:24.242][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-26 16:02:24.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:24.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:24.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:24.246][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-26 16:02:24.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:24.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:24.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:24.249][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-26 16:02:24.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:24.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:24.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:24.253][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:24.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:24.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:24.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:24.257][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:24.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:24.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:24.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:24.260][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:24.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:24.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:24.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:24.264][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:24.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:24.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:24.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:24.267][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:24.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:24.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:24.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:24.271][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:24.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:24.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:24.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:24.281][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [192288, 0, 192288, C27H54O2, InChI=1S/C27H54O2/c1-3-4-5-6-7-8-9-10-11-12-13-14-15-16-17-18-19-20-21-22-23-24-25-26-27(28)29-2/h3-26H2,1-2H3, ...].
biodb.DEBUG[2025-07-26 16:02:24.282][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:24.283][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:24.284][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:24.288][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:24.289][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:24.290][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:24.290][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:24.292][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:24.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:24.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:24.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:24.295][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:24.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:24.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:24.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:24.299][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:24.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:24.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:24.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:24.302][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:24.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:24.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:24.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:24.306][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:24.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:24.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:24.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:24.310][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:24.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:24.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:24.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:24.313][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:24.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:24.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:24.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:24.317][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:24.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:24.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:24.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:24.321][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:24.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:24.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:24.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:24.324][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:24.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:24.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:24.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:24.328][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:24.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:24.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:24.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:24.331][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:24.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:24.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:24.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:24.335][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:24.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:24.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:24.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:24.339][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:24.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:24.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:24.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:24.342][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:24.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:24.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:24.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:24.346][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:24.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:24.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:24.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:24.350][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:24.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:24.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:24.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:24.353][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:24.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:24.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:24.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:24.357][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-26 16:02:24.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:24.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:24.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:24.360][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-26 16:02:24.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:24.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:24.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:24.364][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:24.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:24.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:24.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:24.368][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:24.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:24.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:24.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:24.371][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:24.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:24.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:24.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:24.375][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:24.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:24.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:24.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:24.379][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-07-26 16:02:24.380][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-07-26 16:02:24.381][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-26 16:02:24.382][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-26 16:02:24.383][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-07-26 16:02:24.384][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:24.385][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:24.386][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:24.386][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:24.387][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:24.388][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:24.389][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:24.390][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:24.391][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:24.392][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:24.393][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:24.394][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:24.395][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:24.396][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:24.397][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:24.397][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:24.398][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:24.399][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:24.400][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:24.401][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:24.402][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:24.403][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:24.404][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:24.405][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:24.406][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:24.407][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:24.408][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:24.409][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:24.409][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:24.410][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:24.411][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:24.412][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:24.413][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:24.414][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:24.415][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:24.416][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:24.417][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-26 16:02:24.418][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:24.419][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:24.420][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:24.420][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:24.421][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:24.422][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:24.423][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:24.424][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:24.425][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:24.426][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:24.427][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:24.428][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:24.429][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:24.430][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:24.431][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:24.432][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:24.433][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:24.433][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:24.434][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:24.435][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:24.436][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:24.437][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:24.438][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:24.439][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:24.440][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:24.441][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:24.442][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:24.443][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:24.444][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:24.444][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:24.445][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:24.446][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:24.447][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:24.448][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:24.449][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:24.450][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:24.451][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:24.452][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:24.453][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:24.454][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:24.455][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:24.455][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:24.456][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:24.457][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:24.458][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:24.459][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:24.460][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:24.461][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-26 16:02:24.462][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:24.463][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:24.464][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:24.465][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:24.466][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:24.467][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:24.467][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:24.468][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:24.469][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:24.470][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:24.471][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:24.472][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-07-26 16:02:24.473][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-07-26 16:02:24.474][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:24.478][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:24.479][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:24.480][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:24.481][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:24.482][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:24.483][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:24.484][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:24.485][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:24.485][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:24.486][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:24.487][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:24.488][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:24.489][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:24.490][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:24.491][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:24.492][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:24.493][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:24.493][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:24.494][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:24.495][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:24.496][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:24.497][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:24.498][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:24.499][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:24.500][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:24.500][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:24.501][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:24.502][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:24.503][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:24.504][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:24.505][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:24.506][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:24.507][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:24.508][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:24.508][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:24.509][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-26 16:02:24.510][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:24.511][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:24.512][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:24.513][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:24.514][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:24.515][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:24.516][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:24.516][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:24.517][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:24.518][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:24.519][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:24.520][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-07-26 16:02:24.521][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:24.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:24.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:24.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:24.525][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:24.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:24.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:24.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:24.528][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:24.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:24.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:24.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:24.532][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:24.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:24.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:24.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:24.536][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:24.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:24.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:24.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:24.539][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:24.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:24.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:24.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:24.543][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:24.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:24.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:24.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:24.546][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:24.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:24.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:24.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:24.550][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:24.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:24.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:24.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:24.554][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:24.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:24.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:24.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:24.557][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:24.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:24.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:24.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:24.561][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:24.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:24.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:24.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:24.565][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:24.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:24.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:24.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:24.568][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:24.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:24.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:24.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:24.572][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:24.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:24.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:24.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:24.576][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:24.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:24.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:24.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:24.579][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:24.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:24.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:24.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:24.583][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:24.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:24.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:24.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:24.586][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:24.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:24.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:24.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:24.590][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:24.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:24.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:24.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:24.594][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:24.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:24.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:24.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:24.597][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:24.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:24.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:24.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:24.601][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:24.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:24.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:24.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:24.604][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:24.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:24.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:24.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:24.608][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:24.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:24.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:24.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:24.612][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:24.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:24.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:24.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:24.615][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:24.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:24.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:24.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:24.619][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-26 16:02:24.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:24.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:24.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:24.623][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-26 16:02:24.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:24.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:24.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:24.627][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-26 16:02:24.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:24.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:24.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:24.630][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:24.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:24.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:24.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:24.634][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:24.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:24.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:24.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:24.638][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:24.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:24.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:24.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:24.641][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:24.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:24.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:24.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:24.645][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:24.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:24.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:24.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:24.649][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:24.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:24.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:24.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:24.658][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [15440, 0, 15440, C30H50, InChI=1S/C30H50/c1-25(2)15-11-19-29(7)23-13-21-27(5)17-9-10-18-28(6)22-14-24-30(8)20-12-16-26(3)4/h15-18,23-24H,9-14,19-22H2,1-8H3/b27-17+,28-18+,29-23+,30-24+, ...].
biodb.DEBUG[2025-07-26 16:02:24.659][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:24.660][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:24.661][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:24.665][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:24.665][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:24.666][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:24.667][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:24.668][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:24.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:24.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:24.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:24.672][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:24.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:24.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:24.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:24.676][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:24.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:24.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:24.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:24.679][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:24.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:24.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:24.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:24.683][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:24.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:24.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:24.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:24.686][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:24.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:24.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:24.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:24.690][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:24.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:24.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:24.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:24.694][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:24.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:24.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:24.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:24.697][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:24.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:24.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:24.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:24.701][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:24.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:24.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:24.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:24.705][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:24.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:24.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:24.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:24.708][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:24.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:24.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:24.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:24.712][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:24.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:24.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:24.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:24.716][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:24.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:24.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:24.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:24.719][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:24.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:24.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:24.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:24.726][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:24.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:24.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:24.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:24.730][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:24.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:24.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:24.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:24.733][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:24.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:24.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:24.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:24.737][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-26 16:02:24.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:24.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:24.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:24.740][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-26 16:02:24.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:24.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:24.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:24.744][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:24.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:24.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:24.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:24.747][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:24.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:24.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:24.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:24.751][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:24.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:24.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:24.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:24.755][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:24.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:24.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:24.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:24.758][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-07-26 16:02:24.759][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-07-26 16:02:24.760][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-26 16:02:24.761][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-26 16:02:24.762][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-07-26 16:02:24.762][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:24.763][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:24.764][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:24.765][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:24.766][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:24.767][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:24.768][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:24.769][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:24.770][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:24.770][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:24.771][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:24.772][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:24.773][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:24.774][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:24.775][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:24.776][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:24.777][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:24.778][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:24.778][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:24.779][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:24.780][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:24.781][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:24.782][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:24.783][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:24.784][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:24.785][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:24.786][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:24.786][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:24.787][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:24.788][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:24.789][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:24.790][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:24.791][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:24.792][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:24.793][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:24.793][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:24.794][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-26 16:02:24.795][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:24.796][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:24.797][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:24.798][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:24.799][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:24.800][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:24.801][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:24.801][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:24.802][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:24.803][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:24.804][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:24.805][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:24.806][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:24.807][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:24.808][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:24.809][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:24.809][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:24.810][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:24.811][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:24.812][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:24.813][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:24.814][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:24.815][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:24.816][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:24.817][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:24.817][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:24.818][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:24.819][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:24.820][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:24.821][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:24.822][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:24.823][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:24.824][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:24.824][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:24.825][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:24.826][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:24.827][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:24.828][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:24.829][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:24.830][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:24.831][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:24.832][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:24.832][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:24.833][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:24.834][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:24.835][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:24.836][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:24.837][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-26 16:02:24.838][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:24.839][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:24.840][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:24.840][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:24.841][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:24.842][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:24.843][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:24.844][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:24.845][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:24.846][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:24.847][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:24.848][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-07-26 16:02:24.848][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-07-26 16:02:24.849][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:24.850][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:24.851][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:24.852][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:24.853][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:24.854][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:24.855][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:24.856][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:24.856][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:24.857][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:24.858][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:24.859][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:24.860][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:24.861][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:24.862][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:24.863][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:24.864][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:24.865][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:24.866][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:24.866][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:24.867][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:24.868][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:24.869][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:24.870][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:24.871][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:24.872][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:24.873][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:24.874][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:24.874][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:24.875][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:24.876][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:24.877][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:24.878][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-26 16:02:24.879][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:24.880][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:24.881][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:24.882][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:24.883][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:24.883][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:24.884][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:24.885][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:24.886][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:24.887][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:24.888][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:24.889][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-07-26 16:02:24.890][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:24.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:24.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:24.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:24.893][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:24.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:24.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:24.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:24.897][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:24.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:24.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:24.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:24.901][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:24.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:24.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:24.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:24.904][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:24.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:24.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:24.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:24.908][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:24.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:24.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:24.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:24.912][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:24.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:24.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:24.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:24.916][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:24.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:24.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:24.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:24.919][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:24.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:24.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:24.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:24.923][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:24.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:24.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:24.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:24.927][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:24.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:24.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:24.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:24.930][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:24.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:24.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:24.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:24.934][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:24.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:24.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:24.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:24.938][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:24.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:24.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:24.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:24.941][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:24.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:24.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:24.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:24.945][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:24.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:24.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:24.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:24.949][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:24.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:24.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:24.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:24.952][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:24.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:24.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:24.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:24.956][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:24.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:24.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:24.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:24.960][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:24.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:24.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:24.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:24.964][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:24.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:24.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:24.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:24.971][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:24.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:24.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:24.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:24.974][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:24.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:24.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:24.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:24.978][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:24.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:24.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:24.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:24.982][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-26 16:02:24.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:24.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:24.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:24.985][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-26 16:02:24.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:24.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:24.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:24.989][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-26 16:02:24.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:24.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:24.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:24.993][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:24.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:24.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:24.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:24.996][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:24.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:24.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:24.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:25.000][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:25.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:25.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:25.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:25.003][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:25.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:25.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:25.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:25.007][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:25.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:25.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:25.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:25.011][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:25.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:25.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:25.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:25.019][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [209892, 0, 209892, C30H50, InChI=1S/C30H50/c1-21(2)11-9-12-22(3)23-15-19-30(8)25-13-14-26-27(4,5)17-10-18-28(26,6)24(25)16-20-29(23,30)7/h11,13,22-24,26H,9-10,12,14-20H2,1-8H3/t22-,23+,24+,26+,28-,29+,30-/m1/s1, ...].
biodb.DEBUG[2025-07-26 16:02:25.020][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-07-26 16:02:25.021][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-07-26 16:02:25.024][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:25.025][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:25.026][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:25.030][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:25.030][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:25.031][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:25.032][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-07-26 16:02:25.034][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-07-26 16:02:25.037][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-07-26 16:02:25.039][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/013adb879cee6d4257067df9ba0a8c7b.content.
sched.DEBUG[2025-07-26 16:02:25.040][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-07-26 16:02:25.042][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:25.043][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:25.043][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:25.047][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:25.048][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:25.049][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:25.050][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:25.051][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:25.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:25.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:25.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:25.055][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:25.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:25.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:25.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:25.058][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:25.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:25.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:25.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:25.062][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:25.063][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:25.063][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:25.067][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:25.068][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:25.069][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:25.070][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:25.071][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:25.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:25.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:25.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:25.075][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:25.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:25.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:25.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:25.078][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:25.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:25.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:25.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
sched.DEBUG[2025-07-26 16:02:25.082][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.63*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-07-26 16:02:25.085][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-07-26 16:02:25.088][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/d37a10a1f6afae785eb4d1943c254641.content.
sched.DEBUG[2025-07-26 16:02:25.089][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-07-26 16:02:25.091][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:25.092][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:25.093][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:25.097][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:25.098][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:25.098][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:25.099][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:25.100][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:25.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:25.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:25.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:25.104][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:25.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:25.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:25.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:25.108][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:25.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:25.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:25.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:25.111][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:25.112][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:25.113][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:25.117][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:25.118][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:25.119][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:25.120][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:25.121][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:25.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:25.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:25.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:25.125][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:25.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:25.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:25.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:25.128][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:25.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:25.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:25.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:25.132][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:25.133][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:25.134][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:25.138][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:25.139][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:25.139][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:25.140][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:25.141][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:25.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:25.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:25.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:25.145][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:25.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:25.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:25.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:25.149][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:25.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:25.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:25.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:25.152][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-07-26 16:02:25.154][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:25.155][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:25.155][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:25.159][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:25.160][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:25.161][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:25.162][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:25.163][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:25.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:25.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:25.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:25.167][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:25.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:25.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:25.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:25.170][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:25.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:25.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:25.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:25.174][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:25.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:25.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:25.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:25.178][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:25.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:25.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:25.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:25.181][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:25.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:25.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:25.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:25.185][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:25.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:25.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:25.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:25.188][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:25.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:25.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:25.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:25.192][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:25.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:25.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:25.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:25.196][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:25.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:25.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:25.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:25.199][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:25.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:25.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:25.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:25.203][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:25.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:25.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:25.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:25.207][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:25.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:25.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:25.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:25.210][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:25.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:25.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:25.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:25.214][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:25.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:25.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:25.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:25.221][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:25.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:25.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:25.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:25.225][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:25.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:25.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:25.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:25.228][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:25.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:25.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:25.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:25.232][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-26 16:02:25.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:25.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:25.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:25.236][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-26 16:02:25.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:25.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:25.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:25.239][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:25.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:25.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:25.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:25.243][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:25.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:25.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:25.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:25.246][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:25.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:25.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:25.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:25.250][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:25.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:25.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:25.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:25.253][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-07-26 16:02:25.254][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-07-26 16:02:25.255][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-26 16:02:25.256][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-26 16:02:25.257][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-07-26 16:02:25.258][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:25.259][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:25.260][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:25.260][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:25.261][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:25.262][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:25.263][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:25.264][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:25.265][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:25.266][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:25.267][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:25.267][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:25.268][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:25.269][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:25.270][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:25.271][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:25.272][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:25.273][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:25.274][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:25.275][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:25.275][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:25.276][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:25.277][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:25.278][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:25.279][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:25.280][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:25.281][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:25.282][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:25.283][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:25.284][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:25.284][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:25.285][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:25.286][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:25.287][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:25.288][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:25.289][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:25.290][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-26 16:02:25.291][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:25.291][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:25.292][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:25.293][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:25.294][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:25.295][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:25.296][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:25.297][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:25.298][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:25.298][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:25.299][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:25.300][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:25.301][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:25.302][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:25.303][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:25.304][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:25.305][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:25.306][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:25.306][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:25.307][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:25.308][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:25.309][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:25.310][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:25.311][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:25.312][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:25.313][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:25.314][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:25.314][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:25.315][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:25.316][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:25.317][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:25.318][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:25.319][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:25.320][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:25.321][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:25.321][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:25.322][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:25.323][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:25.324][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:25.325][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:25.326][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:25.327][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:25.328][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:25.329][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:25.330][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:25.330][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:25.331][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:25.332][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-26 16:02:25.333][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:25.334][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:25.335][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:25.336][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:25.337][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:25.337][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:25.338][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:25.339][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:25.340][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:25.341][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:25.342][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:25.343][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-07-26 16:02:25.344][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-07-26 16:02:25.345][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:25.346][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:25.346][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:25.347][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:25.348][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:25.349][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:25.350][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:25.351][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:25.352][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:25.353][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:25.354][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:25.354][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:25.355][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:25.356][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:25.357][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:25.358][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:25.359][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:25.360][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:25.361][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:25.362][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:25.363][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:25.363][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:25.364][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:25.365][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:25.366][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:25.367][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:25.368][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:25.369][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:25.370][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:25.371][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:25.372][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:25.372][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:25.373][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:25.374][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:25.375][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:25.376][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:25.377][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-26 16:02:25.378][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:25.379][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:25.380][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:25.381][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:25.381][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:25.382][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:25.383][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:25.384][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:25.385][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:25.386][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:25.387][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:25.388][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-07-26 16:02:25.389][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:25.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:25.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:25.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:25.392][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:25.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:25.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:25.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:25.396][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:25.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:25.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:25.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:25.400][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:25.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:25.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:25.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:25.403][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:25.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:25.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:25.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:25.407][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:25.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:25.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:25.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:25.411][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:25.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:25.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:25.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:25.414][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:25.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:25.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:25.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:25.418][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:25.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:25.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:25.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:25.422][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:25.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:25.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:25.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:25.425][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:25.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:25.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:25.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:25.429][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:25.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:25.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:25.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:25.433][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:25.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:25.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:25.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:25.436][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:25.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:25.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:25.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:25.440][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:25.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:25.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:25.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:25.444][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:25.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:25.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:25.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:25.447][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:25.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:25.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:25.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:25.451][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:25.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:25.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:25.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:25.455][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:25.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:25.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:25.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:25.459][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:25.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:25.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:25.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:25.465][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:25.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:25.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:25.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:25.469][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:25.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:25.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:25.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:25.473][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:25.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:25.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:25.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:25.476][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:25.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:25.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:25.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:25.480][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:25.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:25.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:25.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:25.484][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:25.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:25.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:25.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:25.487][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:25.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:25.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:25.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:25.491][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-26 16:02:25.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:25.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:25.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:25.494][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-26 16:02:25.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:25.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:25.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:25.498][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-26 16:02:25.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:25.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:25.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:25.502][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:25.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:25.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:25.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:25.505][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:25.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:25.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:25.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:25.509][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:25.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:25.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:25.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:25.513][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:25.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:25.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:25.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:25.516][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:25.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:25.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:25.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:25.520][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:25.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:25.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:25.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:25.529][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [4781, 0, 4781, C29H40N2O4, InChI=1S/C29H40N2O4/c1-6-18-17-31-10-8-20-14-27(33-3)29(35-5)16-23(20)25(31)12-21(18)11-24-22-15-28(34-4)26(32-2)13-19(22)7-9-30-24/h13-16,18,21,24-25,30H,6-12,17H2,1-5H3/t18-,21-,24+,25-/m0/s1, ...].
biodb.DEBUG[2025-07-26 16:02:25.530][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:25.531][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:25.532][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:25.536][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:25.537][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:25.537][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:25.538][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:25.539][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:25.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:25.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:25.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:25.543][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:25.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:25.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:25.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:25.547][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:25.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:25.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:25.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:25.550][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:25.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:25.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:25.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:25.554][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:25.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:25.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:25.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:25.557][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:25.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:25.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:25.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:25.561][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:25.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:25.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:25.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:25.565][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:25.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:25.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:25.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:25.568][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:25.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:25.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:25.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:25.572][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:25.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:25.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:25.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:25.576][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:25.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:25.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:25.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:25.579][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:25.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:25.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:25.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:25.583][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:25.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:25.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:25.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:25.586][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:25.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:25.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:25.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:25.590][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:25.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:25.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:25.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:25.594][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:25.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:25.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:25.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:25.597][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:25.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:25.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:25.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:25.601][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:25.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:25.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:25.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:25.605][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-26 16:02:25.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:25.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:25.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:25.608][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-26 16:02:25.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:25.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:25.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:25.612][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:25.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:25.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:25.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:25.616][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:25.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:25.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:25.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:25.619][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:25.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:25.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:25.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:25.623][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:25.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:25.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:25.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:25.626][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-07-26 16:02:25.627][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-07-26 16:02:25.628][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-26 16:02:25.629][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-26 16:02:25.630][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-07-26 16:02:25.631][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:25.632][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:25.633][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:25.634][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:25.634][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:25.635][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:25.636][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:25.637][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:25.638][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:25.639][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:25.640][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:25.641][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:25.642][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:25.643][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:25.643][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:25.644][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:25.645][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:25.646][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:25.647][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:25.648][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:25.649][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:25.650][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:25.651][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:25.652][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:25.652][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:25.653][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:25.654][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:25.655][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:25.656][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:25.657][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:25.658][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:25.659][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:25.660][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:25.661][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:25.661][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:25.662][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:25.663][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-26 16:02:25.664][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:25.665][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:25.666][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:25.667][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:25.668][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:25.669][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:25.670][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:25.670][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:25.671][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:25.672][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:25.673][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:25.674][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:25.675][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:25.676][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:25.677][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:25.678][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:25.679][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:25.679][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:25.680][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:25.681][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:25.682][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:25.683][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:25.684][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:25.685][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:25.686][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:25.687][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:25.687][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:25.688][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:25.689][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:25.690][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:25.691][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:25.692][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:25.693][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:25.694][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:25.695][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:25.696][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:25.697][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:25.697][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:25.698][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:25.699][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:25.700][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:25.701][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:25.702][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:25.703][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:25.704][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:25.708][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:25.709][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:25.710][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-26 16:02:25.711][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:25.712][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:25.712][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:25.713][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:25.714][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:25.715][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:25.716][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:25.717][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:25.718][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:25.719][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:25.719][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:25.720][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-07-26 16:02:25.721][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-07-26 16:02:25.722][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:25.723][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:25.724][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:25.725][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:25.726][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:25.727][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:25.727][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:25.728][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:25.729][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:25.730][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:25.731][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:25.732][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:25.733][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:25.734][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:25.735][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:25.735][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:25.736][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:25.737][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:25.738][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:25.739][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:25.740][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:25.741][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:25.742][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:25.742][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:25.743][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:25.744][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:25.745][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:25.746][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:25.747][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:25.748][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:25.749][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:25.749][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:25.750][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:25.751][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:25.752][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:25.753][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:25.754][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-26 16:02:25.755][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:25.756][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:25.756][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:25.757][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:25.758][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:25.759][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:25.760][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:25.761][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:25.762][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:25.763][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:25.764][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:25.765][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-07-26 16:02:25.765][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:25.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:25.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:25.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:25.769][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:25.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:25.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:25.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:25.773][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:25.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:25.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:25.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:25.776][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:25.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:25.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:25.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:25.780][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:25.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:25.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:25.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:25.784][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:25.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:25.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:25.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:25.787][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:25.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:25.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:25.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:25.791][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:25.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:25.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:25.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:25.794][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:25.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:25.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:25.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:25.798][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:25.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:25.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:25.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:25.802][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:25.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:25.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:25.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:25.805][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:25.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:25.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:25.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:25.809][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:25.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:25.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:25.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:25.813][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:25.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:25.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:25.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:25.816][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:25.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:25.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:25.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:25.820][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:25.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:25.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:25.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:25.824][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:25.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:25.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:25.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:25.827][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:25.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:25.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:25.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:25.831][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:25.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:25.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:25.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:25.835][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:25.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:25.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:25.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:25.838][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:25.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:25.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:25.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:25.842][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:25.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:25.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:25.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:25.846][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:25.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:25.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:25.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:25.849][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:25.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:25.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:25.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:25.853][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:25.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:25.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:25.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:25.857][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:25.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:25.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:25.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:25.860][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:25.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:25.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:25.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:25.864][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-26 16:02:25.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:25.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:25.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:25.868][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-26 16:02:25.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:25.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:25.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:25.871][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-26 16:02:25.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:25.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:25.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:25.875][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:25.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:25.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:25.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:25.879][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:25.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:25.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:25.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:25.882][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:25.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:25.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:25.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:25.886][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:25.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:25.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:25.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:25.890][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:25.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:25.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:25.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:25.893][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:25.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:25.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:25.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:25.903][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [16587, 0, 16587, C27H44O7, InChI=1S/C27H44O7/c1-23(2,32)9-8-22(31)26(5,33)21-7-11-27(34)16-12-18(28)17-13-19(29)20(30)14-24(17,3)15(16)6-10-25(21,27)4/h12,15,17,19-22,29-34H,6-11,13-14H2,1-5H3/t15-,17-,19+,20-,21-,22+,24+,25+,26+,27+/m0/s1, ...].
biodb.DEBUG[2025-07-26 16:02:25.904][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:25.904][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:25.905][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:25.909][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:25.910][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:25.911][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:25.912][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:25.913][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:25.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:25.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:25.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:25.916][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:25.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:25.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:25.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:25.920][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:25.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:25.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:25.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:25.924][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:25.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:25.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:25.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:25.927][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:25.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:25.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:25.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:25.931][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:25.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:25.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:25.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:25.935][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:25.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:25.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:25.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:25.938][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:25.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:25.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:25.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:25.942][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:25.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:25.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:25.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:25.946][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:25.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:25.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:25.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:25.953][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:25.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:25.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:25.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:25.956][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:25.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:25.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:25.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:25.960][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:25.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:25.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:25.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:25.963][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:25.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:25.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:25.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:25.967][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:25.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:25.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:25.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:25.971][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:25.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:25.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:25.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:25.974][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:25.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:25.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:25.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:25.978][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:25.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:25.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:25.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:25.981][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-26 16:02:25.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:25.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:25.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:25.985][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-26 16:02:25.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:25.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:25.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:25.988][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:25.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:25.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:25.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:25.992][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:25.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:25.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:25.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:25.996][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:25.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:25.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:25.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:25.999][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:26.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:26.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:26.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:26.003][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-07-26 16:02:26.004][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-07-26 16:02:26.004][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-26 16:02:26.005][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-26 16:02:26.006][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-07-26 16:02:26.007][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:26.008][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:26.009][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:26.010][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:26.011][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:26.012][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:26.012][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:26.013][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:26.014][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:26.015][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:26.016][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:26.017][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:26.018][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:26.019][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:26.019][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:26.020][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:26.021][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:26.022][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:26.023][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:26.024][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:26.025][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:26.026][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:26.027][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:26.027][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:26.028][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:26.029][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:26.030][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:26.031][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:26.032][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:26.033][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:26.034][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:26.035][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:26.035][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:26.036][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:26.037][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:26.038][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:26.039][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-26 16:02:26.040][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:26.041][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:26.042][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:26.043][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:26.043][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:26.044][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:26.045][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:26.046][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:26.047][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:26.048][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:26.049][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:26.050][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:26.051][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:26.051][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:26.052][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:26.053][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:26.054][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:26.055][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:26.056][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:26.057][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:26.058][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:26.059][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:26.059][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:26.060][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:26.061][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:26.062][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:26.063][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:26.064][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:26.065][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:26.066][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:26.067][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:26.067][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:26.068][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:26.069][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:26.070][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:26.071][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:26.072][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:26.073][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:26.074][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:26.075][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:26.076][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:26.076][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:26.077][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:26.078][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:26.079][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:26.080][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:26.081][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:26.082][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-26 16:02:26.083][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:26.084][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:26.084][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:26.085][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:26.086][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:26.087][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:26.088][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:26.089][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:26.090][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:26.091][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:26.092][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:26.093][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-07-26 16:02:26.094][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-07-26 16:02:26.095][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:26.095][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:26.096][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:26.097][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:26.098][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:26.099][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:26.100][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:26.101][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:26.102][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:26.103][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:26.104][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:26.104][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:26.105][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:26.106][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:26.107][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:26.108][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:26.109][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:26.110][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:26.111][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:26.112][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:26.113][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:26.114][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:26.114][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:26.115][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:26.116][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:26.117][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:26.118][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:26.119][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:26.120][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:26.121][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:26.122][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:26.123][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:26.124][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-26 16:02:26.124][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:26.125][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:26.126][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:26.127][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:26.128][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:26.129][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:26.130][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:26.131][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:26.132][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:26.133][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:26.133][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:26.134][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-07-26 16:02:26.135][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:26.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:26.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:26.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:26.139][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:26.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:26.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:26.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:26.143][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:26.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:26.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:26.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:26.146][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:26.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:26.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:26.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:26.150][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:26.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:26.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:26.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:26.154][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:26.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:26.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:26.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:26.157][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:26.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:26.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:26.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:26.161][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:26.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:26.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:26.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:26.165][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:26.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:26.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:26.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:26.169][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:26.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:26.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:26.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:26.172][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:26.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:26.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:26.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:26.176][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:26.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:26.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:26.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:26.180][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:26.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:26.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:26.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:26.183][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:26.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:26.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:26.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:26.187][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:26.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:26.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:26.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:26.191][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:26.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:26.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:26.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:26.198][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:26.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:26.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:26.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:26.201][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:26.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:26.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:26.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:26.205][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:26.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:26.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:26.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:26.208][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:26.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:26.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:26.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:26.212][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:26.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:26.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:26.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:26.216][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:26.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:26.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:26.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:26.219][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:26.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:26.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:26.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:26.223][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:26.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:26.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:26.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:26.227][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-26 16:02:26.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:26.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:26.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:26.230][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-26 16:02:26.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:26.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:26.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:26.234][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-26 16:02:26.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:26.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:26.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:26.237][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:26.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:26.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:26.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:26.241][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:26.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:26.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:26.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:26.245][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:26.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:26.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:26.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:26.248][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:26.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:26.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:26.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:26.252][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:26.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:26.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:26.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:26.256][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:26.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:26.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:26.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:26.264][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [19804, 0, 19804, C27H44O7, InChI=1S/C27H44O7/c1-23(2,32)8-5-9-26(33,15-28)22-7-11-27(34)17-12-19(29)18-13-20(30)21(31)14-24(18,3)16(17)6-10-25(22,27)4/h12,16,18,20-22,28,30-34H,5-11,13-15H2,1-4H3/t16-,18-,20+,21-,22-,24+,25+,26+,27+/m0/s1, ...].
biodb.DEBUG[2025-07-26 16:02:26.265][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-07-26 16:02:26.266][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-07-26 16:02:26.269][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:26.270][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:26.271][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:26.275][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:26.275][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:26.276][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:26.277][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-07-26 16:02:26.279][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-07-26 16:02:26.282][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-07-26 16:02:26.284][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/618204bc3e9a685033db1d9be9d78d44.content.
sched.DEBUG[2025-07-26 16:02:26.285][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-07-26 16:02:26.287][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:26.288][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:26.289][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:26.292][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:26.293][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:26.294][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:26.295][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:26.296][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:26.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:26.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:26.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:26.300][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:26.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:26.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:26.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:26.303][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:26.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:26.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:26.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:26.307][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:26.308][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:26.309][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:26.312][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:26.313][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:26.314][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:26.315][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:26.316][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:26.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:26.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:26.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:26.319][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:26.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:26.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:26.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:26.323][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:26.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:26.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:26.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:26.327][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:26.328][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:26.328][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:26.332][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:26.333][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:26.334][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:26.335][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:26.336][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:26.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:26.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:26.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:26.339][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:26.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:26.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:26.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:26.343][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:26.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:26.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:26.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:26.347][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:26.347][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:26.348][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:26.352][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:26.353][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:26.354][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:26.355][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:26.356][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:26.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:26.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:26.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:26.359][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:26.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:26.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:26.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:26.363][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:26.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:26.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:26.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:26.367][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:26.367][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:26.368][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:26.372][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:26.373][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:26.374][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:26.374][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:26.375][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:26.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:26.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:26.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:26.379][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:26.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:26.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:26.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:26.383][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:26.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:26.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:26.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:26.386][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:26.387][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:26.388][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:26.392][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:26.393][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:26.393][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:26.394][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:26.395][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:26.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:26.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:26.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:26.399][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:26.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:26.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:26.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:26.403][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:26.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:26.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:26.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:26.406][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:26.407][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:26.408][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:26.412][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:26.413][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:26.413][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:26.414][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:26.415][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:26.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:26.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:26.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:26.419][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:26.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:26.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:26.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:26.423][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:26.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:26.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:26.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:26.426][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:26.427][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:26.428][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:26.432][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:26.432][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:26.433][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:26.434][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:26.435][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:26.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:26.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:26.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:26.442][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:26.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:26.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:26.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:26.446][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:26.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:26.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:26.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
sched.DEBUG[2025-07-26 16:02:26.450][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-07-26 16:02:26.453][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-07-26 16:02:26.454][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/e0540b0a9d3ba75ce1522ce23f76319e.content.
sched.DEBUG[2025-07-26 16:02:26.455][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-07-26 16:02:26.457][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:26.458][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:26.459][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:26.463][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:26.463][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:26.464][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:26.465][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:26.466][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:26.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:26.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:26.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:26.470][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:26.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:26.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:26.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:26.473][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:26.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:26.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:26.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:26.477][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:26.478][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:26.478][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:26.482][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:26.483][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:26.484][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:26.485][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:26.486][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:26.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:26.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:26.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:26.489][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:26.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:26.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:26.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:26.493][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:26.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:26.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:26.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:26.496][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:26.497][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:26.498][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:26.502][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:26.502][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:26.503][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:26.504][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:26.505][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:26.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:26.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:26.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:26.509][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:26.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:26.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:26.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:26.512][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:26.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:26.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:26.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:26.516][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-07-26 16:02:26.517][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:26.518][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:26.519][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:26.523][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:26.524][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:26.524][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:26.525][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:26.526][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:26.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:26.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:26.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:26.530][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:26.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:26.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:26.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:26.533][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:26.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:26.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:26.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:26.537][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:26.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:26.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:26.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:26.541][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:26.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:26.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:26.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:26.544][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:26.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:26.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:26.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:26.548][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:26.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:26.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:26.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:26.551][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:26.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:26.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:26.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:26.555][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:26.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:26.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:26.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:26.559][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:26.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:26.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:26.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:26.562][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:26.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:26.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:26.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:26.566][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:26.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:26.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:26.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:26.569][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:26.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:26.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:26.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:26.573][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:26.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:26.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:26.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:26.577][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:26.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:26.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:26.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:26.580][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:26.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:26.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:26.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:26.584][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:26.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:26.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:26.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:26.588][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:26.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:26.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:26.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:26.591][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-26 16:02:26.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:26.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:26.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:26.595][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-26 16:02:26.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:26.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:26.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:26.598][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:26.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:26.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:26.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:26.602][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:26.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:26.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:26.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:26.606][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:26.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:26.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:26.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:26.609][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:26.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:26.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:26.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:26.613][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-07-26 16:02:26.614][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-07-26 16:02:26.615][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-26 16:02:26.616][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-26 16:02:26.616][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-07-26 16:02:26.617][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:26.618][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:26.619][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:26.620][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:26.621][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:26.622][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:26.623][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:26.624][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:26.625][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:26.626][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:26.626][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:26.627][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:26.628][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:26.629][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:26.630][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:26.631][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:26.632][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:26.633][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:26.634][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:26.635][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:26.635][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:26.636][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:26.637][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:26.638][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:26.639][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:26.640][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:26.641][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:26.642][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:26.643][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:26.644][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:26.644][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:26.645][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:26.646][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:26.647][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:26.648][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:26.649][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:26.650][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-26 16:02:26.651][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:26.652][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:26.653][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:26.653][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:26.654][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:26.655][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:26.656][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:26.657][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:26.658][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:26.659][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:26.660][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:26.661][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:26.662][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:26.663][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:26.663][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:26.664][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:26.665][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:26.666][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:26.667][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:26.668][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:26.669][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:26.670][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:26.671][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:26.672][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:26.673][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:26.673][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:26.674][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:26.675][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:26.676][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:26.677][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:26.678][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:26.679][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:26.680][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:26.681][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:26.682][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:26.683][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:26.687][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:26.688][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:26.689][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:26.690][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:26.691][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:26.692][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:26.693][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:26.693][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:26.694][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:26.695][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:26.696][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:26.697][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-26 16:02:26.698][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:26.699][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:26.700][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:26.701][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:26.702][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:26.702][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:26.703][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:26.704][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:26.705][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:26.706][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:26.707][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:26.708][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-07-26 16:02:26.709][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-07-26 16:02:26.710][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:26.710][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:26.711][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:26.712][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:26.713][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:26.714][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:26.715][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:26.716][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:26.717][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:26.718][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:26.718][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:26.719][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:26.720][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:26.721][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:26.722][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:26.723][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:26.724][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:26.725][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:26.725][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:26.726][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:26.727][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:26.728][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:26.729][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:26.730][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:26.731][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:26.732][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:26.732][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:26.733][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:26.734][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:26.735][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:26.736][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:26.737][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:26.738][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:26.739][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:26.740][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:26.740][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:26.741][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-26 16:02:26.742][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:26.743][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:26.744][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:26.745][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:26.746][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:26.747][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:26.748][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:26.748][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:26.749][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:26.750][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:26.751][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:26.752][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-07-26 16:02:26.753][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:26.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:26.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:26.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:26.757][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:26.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:26.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:26.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:26.760][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:26.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:26.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:26.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:26.764][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:26.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:26.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:26.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:26.767][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:26.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:26.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:26.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:26.771][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:26.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:26.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:26.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:26.775][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:26.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:26.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:26.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:26.778][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:26.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:26.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:26.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:26.782][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:26.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:26.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:26.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:26.786][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:26.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:26.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:26.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:26.789][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:26.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:26.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:26.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:26.793][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:26.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:26.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:26.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:26.796][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:26.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:26.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:26.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:26.800][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:26.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:26.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:26.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:26.804][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:26.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:26.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:26.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:26.807][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:26.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:26.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:26.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:26.811][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:26.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:26.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:26.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:26.815][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:26.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:26.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:26.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:26.818][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:26.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:26.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:26.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:26.822][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:26.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:26.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:26.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:26.826][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:26.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:26.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:26.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:26.830][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:26.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:26.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:26.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:26.833][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:26.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:26.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:26.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:26.837][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:26.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:26.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:26.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:26.841][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:26.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:26.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:26.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:26.844][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:26.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:26.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:26.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:26.848][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:26.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:26.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:26.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:26.852][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-26 16:02:26.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:26.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:26.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:26.855][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-26 16:02:26.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:26.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:26.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:26.859][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-26 16:02:26.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:26.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:26.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:26.863][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:26.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:26.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:26.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:26.866][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:26.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:26.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:26.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:26.870][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:26.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:26.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:26.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:26.874][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:26.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:26.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:26.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:26.877][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:26.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:26.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:26.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:26.881][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:26.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:26.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:26.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:26.890][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [7799, 0, 7799, C16H31N2O8P, InChI=1S/C16H28N2O4.H3O4P/c1-5-12(6-2)22-14-9-11(16(20)21-7-3)8-13(17)15(14)18-10(4)19;1-5(2,3)4/h9,12-15H,5-8,17H2,1-4H3,(H,18,19);(H3,1,2,3,4)/t13-,14+,15+;/m0./s1, ...].
biodb.DEBUG[2025-07-26 16:02:26.891][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:26.892][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:26.893][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:26.897][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:26.898][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:26.899][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:26.900][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:26.901][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:26.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:26.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:26.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:26.904][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:26.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:26.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:26.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:26.908][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:26.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:26.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:26.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:26.912][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:26.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:26.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:26.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:26.915][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:26.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:26.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:26.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:26.919][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:26.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:26.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:26.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:26.923][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:26.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:26.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:26.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:26.926][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:26.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:26.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:26.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:26.934][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:26.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:26.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:26.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:26.937][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:26.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:26.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:26.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:26.941][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:26.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:26.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:26.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:26.944][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:26.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:26.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:26.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:26.948][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:26.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:26.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:26.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:26.951][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:26.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:26.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:26.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:26.955][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:26.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:26.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:26.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:26.959][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:26.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:26.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:26.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:26.962][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:26.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:26.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:26.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:26.966][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:26.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:26.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:26.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:26.969][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-26 16:02:26.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:26.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:26.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:26.973][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-26 16:02:26.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:26.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:26.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:26.977][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:26.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:26.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:26.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:26.980][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:26.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:26.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:26.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:26.984][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:26.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:26.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:26.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:26.987][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:26.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:26.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:26.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:26.991][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-07-26 16:02:26.992][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-07-26 16:02:26.993][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-26 16:02:26.993][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-26 16:02:26.994][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-07-26 16:02:26.995][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:26.996][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:26.997][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:26.998][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:26.999][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:27.000][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:27.001][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:27.001][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:27.002][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:27.003][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:27.004][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:27.005][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:27.006][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:27.007][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:27.008][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:27.009][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:27.009][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:27.010][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:27.011][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:27.012][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:27.013][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:27.014][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:27.015][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:27.016][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:27.017][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:27.017][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:27.018][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:27.019][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:27.020][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:27.021][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:27.022][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:27.023][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:27.024][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:27.025][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:27.025][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:27.026][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:27.027][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-26 16:02:27.028][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:27.029][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:27.030][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:27.031][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:27.032][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:27.033][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:27.033][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:27.034][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:27.035][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:27.036][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:27.037][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:27.038][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:27.039][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:27.040][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:27.041][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:27.041][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:27.042][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:27.043][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:27.044][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:27.045][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:27.046][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:27.047][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:27.048][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:27.049][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:27.050][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:27.050][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:27.051][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:27.052][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:27.053][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:27.054][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:27.055][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:27.056][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:27.057][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:27.058][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:27.058][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:27.059][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:27.060][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:27.061][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:27.062][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:27.063][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:27.064][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:27.065][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:27.066][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:27.066][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:27.067][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:27.068][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:27.069][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:27.070][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-26 16:02:27.071][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:27.072][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:27.073][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:27.074][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:27.075][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:27.076][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:27.076][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:27.077][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:27.078][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:27.079][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:27.080][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:27.081][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-07-26 16:02:27.082][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-07-26 16:02:27.083][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:27.084][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:27.085][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:27.086][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:27.087][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:27.087][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:27.088][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:27.089][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:27.090][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:27.091][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:27.092][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:27.093][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:27.094][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:27.095][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:27.096][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:27.096][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:27.097][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:27.098][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:27.099][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:27.100][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:27.101][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:27.102][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:27.103][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:27.104][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:27.105][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:27.105][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:27.106][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:27.107][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:27.108][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:27.109][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:27.110][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:27.111][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:27.112][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-26 16:02:27.113][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:27.114][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:27.114][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:27.115][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:27.116][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:27.117][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:27.118][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:27.119][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:27.120][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:27.121][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:27.122][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:27.123][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-07-26 16:02:27.124][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:27.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:27.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:27.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:27.127][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:27.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:27.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:27.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:27.131][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:27.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:27.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:27.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:27.135][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:27.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:27.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:27.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:27.138][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:27.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:27.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:27.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:27.142][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:27.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:27.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:27.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:27.146][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:27.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:27.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:27.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:27.149][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:27.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:27.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:27.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:27.153][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:27.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:27.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:27.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:27.157][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:27.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:27.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:27.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:27.161][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:27.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:27.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:27.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:27.164][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:27.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:27.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:27.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:27.168][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:27.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:27.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:27.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:27.172][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:27.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:27.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:27.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:27.179][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:27.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:27.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:27.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:27.182][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:27.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:27.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:27.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:27.186][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:27.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:27.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:27.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:27.190][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:27.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:27.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:27.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:27.193][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:27.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:27.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:27.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:27.197][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:27.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:27.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:27.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:27.200][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:27.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:27.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:27.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:27.204][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:27.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:27.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:27.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:27.208][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:27.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:27.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:27.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:27.211][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:27.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:27.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:27.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:27.215][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-26 16:02:27.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:27.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:27.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:27.219][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-26 16:02:27.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:27.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:27.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:27.222][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-26 16:02:27.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:27.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:27.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:27.226][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:27.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:27.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:27.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:27.229][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:27.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:27.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:27.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:27.233][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:27.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:27.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:27.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:27.237][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:27.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:27.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:27.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:27.240][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:27.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:27.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:27.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:27.244][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:27.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:27.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:27.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:27.253][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [71954, 0, 71954, C18H21F3N6O2, InChI=1S/C18H21F3N6O2/c19-18(20,21)13-9-15(22)23-11-12(13)14-10-16(26-1-5-28-6-2-26)25-17(24-14)27-3-7-29-8-4-27/h9-11H,1-8H2,(H2,22,23), ...].
biodb.DEBUG[2025-07-26 16:02:27.254][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:27.254][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:27.255][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:27.259][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:27.260][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:27.261][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:27.262][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:27.263][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:27.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:27.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:27.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:27.266][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:27.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:27.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:27.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:27.270][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:27.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:27.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:27.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:27.274][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:27.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:27.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:27.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:27.277][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:27.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:27.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:27.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:27.281][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:27.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:27.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:27.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:27.284][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:27.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:27.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:27.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:27.288][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:27.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:27.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:27.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:27.292][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:27.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:27.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:27.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:27.295][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:27.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:27.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:27.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:27.299][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:27.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:27.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:27.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:27.302][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:27.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:27.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:27.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:27.306][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:27.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:27.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:27.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:27.310][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:27.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:27.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:27.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:27.313][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:27.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:27.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:27.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:27.317][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:27.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:27.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:27.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:27.320][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:27.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:27.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:27.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:27.324][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:27.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:27.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:27.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:27.328][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-26 16:02:27.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:27.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:27.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:27.331][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-26 16:02:27.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:27.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:27.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:27.335][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:27.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:27.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:27.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:27.339][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:27.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:27.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:27.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:27.342][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:27.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:27.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:27.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:27.346][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:27.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:27.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:27.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:27.350][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-07-26 16:02:27.351][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-07-26 16:02:27.351][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-26 16:02:27.352][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-26 16:02:27.353][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-07-26 16:02:27.354][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:27.355][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:27.356][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:27.357][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:27.358][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:27.359][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:27.359][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:27.360][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:27.361][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:27.362][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:27.363][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:27.364][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:27.365][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:27.366][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:27.367][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:27.368][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:27.368][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:27.369][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:27.370][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:27.371][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:27.372][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:27.373][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:27.374][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:27.375][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:27.376][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:27.377][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:27.377][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:27.378][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:27.379][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:27.380][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:27.381][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:27.382][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:27.383][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:27.384][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:27.385][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:27.386][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:27.386][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-26 16:02:27.387][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:27.388][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:27.389][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:27.390][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:27.391][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:27.392][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:27.393][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:27.394][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:27.395][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:27.395][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:27.396][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:27.397][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:27.398][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:27.399][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:27.400][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:27.401][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:27.402][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:27.403][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:27.404][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:27.404][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:27.405][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:27.406][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:27.407][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:27.408][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:27.409][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:27.410][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:27.411][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:27.412][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:27.413][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:27.414][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:27.414][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:27.419][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:27.420][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:27.421][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:27.422][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:27.423][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:27.424][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:27.425][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:27.426][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:27.426][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:27.427][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:27.428][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:27.429][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:27.430][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:27.431][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:27.432][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:27.433][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:27.434][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-26 16:02:27.435][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:27.436][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:27.436][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:27.437][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:27.438][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:27.439][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:27.440][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:27.441][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:27.442][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:27.443][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:27.444][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:27.444][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-07-26 16:02:27.445][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-07-26 16:02:27.446][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:27.447][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:27.448][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:27.449][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:27.450][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:27.451][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:27.452][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:27.452][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:27.453][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:27.454][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:27.455][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:27.456][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:27.457][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:27.458][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:27.459][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:27.459][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:27.460][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:27.461][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:27.462][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:27.463][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:27.464][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:27.465][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:27.466][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:27.466][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:27.467][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:27.468][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:27.469][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:27.470][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:27.471][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:27.472][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:27.473][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:27.474][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:27.474][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-26 16:02:27.475][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:27.476][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:27.477][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:27.478][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:27.479][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:27.480][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:27.481][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:27.482][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:27.482][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:27.483][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:27.484][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:27.485][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-07-26 16:02:27.486][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:27.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:27.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:27.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:27.490][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:27.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:27.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:27.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:27.493][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:27.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:27.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:27.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:27.497][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:27.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:27.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:27.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:27.501][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:27.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:27.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:27.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:27.504][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:27.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:27.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:27.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:27.508][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:27.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:27.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:27.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:27.511][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:27.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:27.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:27.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:27.515][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:27.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:27.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:27.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:27.519][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:27.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:27.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:27.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:27.522][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:27.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:27.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:27.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:27.526][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:27.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:27.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:27.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:27.530][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:27.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:27.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:27.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:27.533][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:27.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:27.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:27.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:27.537][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:27.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:27.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:27.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:27.541][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:27.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:27.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:27.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:27.544][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:27.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:27.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:27.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:27.548][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:27.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:27.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:27.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:27.552][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:27.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:27.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:27.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:27.555][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:27.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:27.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:27.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:27.559][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:27.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:27.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:27.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:27.563][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:27.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:27.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:27.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:27.566][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:27.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:27.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:27.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:27.570][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:27.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:27.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:27.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:27.574][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-26 16:02:27.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:27.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:27.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:27.577][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-26 16:02:27.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:27.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:27.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:27.581][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-26 16:02:27.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:27.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:27.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:27.585][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:27.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:27.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:27.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:27.588][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:27.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:27.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:27.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:27.592][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:27.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:27.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:27.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:27.596][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:27.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:27.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:27.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:27.599][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:27.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:27.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:27.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:27.603][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:27.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:27.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:27.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:27.612][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [197612, 0, 197612, C18H18O9S, InChI=1S/C18H18O9S/c1-7-3-9(19)13-11(4-7)27-16-8(14(13)21)5-12(28-16)18(25,17(24)26-2)6-10(20)15(22)23/h3-4,10,12,19-20,25H,5-6H2,1-2H3,(H,22,23)/t10-,12+,18?/m1/s1, ...].
biodb.DEBUG[2025-07-26 16:02:27.613][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-07-26 16:02:27.614][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-07-26 16:02:27.621][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:27.622][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:27.623][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:27.627][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:27.628][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:27.629][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:27.629][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-07-26 16:02:27.632][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-07-26 16:02:27.634][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-07-26 16:02:27.636][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/8fc54eee7e982ce554bee8000d8203f7.content.
sched.DEBUG[2025-07-26 16:02:27.637][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-07-26 16:02:27.639][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:27.640][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:27.641][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:27.644][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:27.645][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:27.646][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:27.647][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:27.648][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:27.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:27.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:27.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:27.652][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:27.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:27.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:27.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:27.655][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:27.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:27.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:27.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
sched.DEBUG[2025-07-26 16:02:27.663][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-07-26 16:02:27.666][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-07-26 16:02:27.668][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/6def615835d7c1dfccd5a5f135bd2f9d.content.
sched.DEBUG[2025-07-26 16:02:27.669][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-07-26 16:02:27.671][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:27.672][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:27.672][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:27.676][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:27.677][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:27.678][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:27.679][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:27.680][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:27.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:27.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:27.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:27.683][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:27.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:27.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:27.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:27.687][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:27.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:27.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:27.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:27.691][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:27.691][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:27.692][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:27.696][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:27.697][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:27.698][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:27.699][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:27.700][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:27.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:27.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:27.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:27.703][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:27.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:27.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:27.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:27.707][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:27.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:27.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:27.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:27.711][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-07-26 16:02:27.712][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:27.713][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:27.714][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:27.718][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:27.719][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:27.719][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:27.720][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:27.721][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:27.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:27.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:27.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:27.725][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:27.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:27.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:27.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:27.729][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:27.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:27.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:27.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:27.732][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:27.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:27.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:27.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:27.736][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:27.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:27.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:27.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:27.740][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:27.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:27.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:27.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:27.743][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:27.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:27.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:27.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:27.747][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:27.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:27.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:27.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:27.750][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:27.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:27.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:27.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:27.754][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:27.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:27.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:27.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:27.757][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:27.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:27.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:27.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:27.761][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:27.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:27.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:27.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:27.765][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:27.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:27.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:27.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:27.768][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:27.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:27.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:27.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:27.772][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:27.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:27.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:27.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:27.775][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:27.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:27.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:27.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:27.779][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:27.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:27.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:27.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:27.783][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:27.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:27.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:27.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:27.786][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-26 16:02:27.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:27.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:27.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:27.790][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-26 16:02:27.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:27.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:27.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:27.793][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:27.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:27.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:27.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:27.797][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:27.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:27.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:27.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:27.801][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:27.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:27.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:27.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:27.804][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:27.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:27.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:27.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:27.808][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-07-26 16:02:27.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-07-26 16:02:27.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:27.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:27.812][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-07-26 16:02:27.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-07-26 16:02:27.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:27.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:27.815][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-07-26 16:02:27.816][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-07-26 16:02:27.817][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-26 16:02:27.818][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-26 16:02:27.819][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-07-26 16:02:27.820][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:27.821][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:27.822][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:27.823][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:27.824][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:27.825][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:27.826][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:27.827][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:27.827][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:27.828][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:27.829][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:27.830][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:27.831][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:27.832][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:27.833][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:27.834][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:27.835][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:27.836][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:27.837][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:27.838][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:27.839][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:27.840][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:27.840][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:27.841][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:27.842][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:27.843][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:27.844][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:27.845][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:27.846][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:27.847][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:27.848][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:27.849][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:27.849][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:27.850][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:27.851][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:27.852][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:27.853][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-26 16:02:27.854][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:27.855][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:27.856][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:27.857][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:27.858][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:27.859][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:27.859][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:27.860][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:27.861][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:27.862][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:27.863][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:27.864][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-07-26 16:02:27.865][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-07-26 16:02:27.866][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:27.867][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:27.868][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:27.869][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:27.869][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:27.870][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:27.871][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:27.872][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:27.873][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:27.874][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:27.875][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:27.876][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:27.877][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:27.878][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:27.878][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:27.879][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:27.880][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:27.881][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:27.882][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:27.883][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:27.884][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:27.885][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:27.886][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:27.887][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:27.888][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:27.888][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:27.889][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:27.890][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:27.891][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:27.892][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:27.893][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:27.894][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:27.895][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:27.896][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:27.897][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:27.898][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:27.898][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:27.899][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:27.900][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-26 16:02:27.901][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:27.902][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:27.903][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:27.904][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:27.905][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:27.906][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:27.907][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:27.911][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:27.912][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:27.913][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:27.914][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:27.915][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-07-26 16:02:27.916][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-07-26 16:02:27.917][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:27.918][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:27.919][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-07-26 16:02:27.919][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-07-26 16:02:27.920][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:27.921][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:27.922][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:27.923][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:27.924][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:27.925][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:27.926][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:27.926][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:27.927][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:27.928][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:27.929][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:27.930][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:27.931][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:27.932][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:27.933][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:27.934][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:27.934][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:27.935][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:27.936][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:27.937][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:27.938][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:27.939][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:27.940][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:27.941][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:27.941][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:27.942][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:27.943][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:27.944][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:27.945][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:27.946][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:27.947][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:27.948][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:27.949][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-26 16:02:27.949][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:27.950][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:27.951][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:27.952][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:27.953][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:27.954][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:27.955][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:27.956][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:27.957][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:27.957][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:27.958][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:27.959][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-07-26 16:02:27.960][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:27.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:27.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:27.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:27.964][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:27.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:27.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:27.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:27.967][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:27.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:27.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:27.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:27.971][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:27.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:27.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:27.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:27.975][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:27.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:27.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:27.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:27.978][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:27.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:27.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:27.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:27.982][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:27.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:27.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:27.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:27.986][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:27.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:27.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:27.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:27.989][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:27.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:27.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:27.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:27.993][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:27.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:27.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:27.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:27.996][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:27.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:27.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:27.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:28.000][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:28.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:28.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:28.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:28.004][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:28.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:28.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:28.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:28.007][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:28.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:28.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:28.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:28.011][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:28.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:28.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:28.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:28.015][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:28.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:28.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:28.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:28.018][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:28.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:28.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:28.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:28.022][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:28.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:28.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:28.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:28.026][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:28.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:28.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:28.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:28.029][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:28.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:28.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:28.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:28.033][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:28.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:28.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:28.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:28.037][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:28.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:28.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:28.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:28.040][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:28.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:28.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:28.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:28.044][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:28.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:28.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:28.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:28.048][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-26 16:02:28.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:28.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:28.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:28.051][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-26 16:02:28.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:28.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:28.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:28.055][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-26 16:02:28.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:28.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:28.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:28.059][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:28.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:28.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:28.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:28.062][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:28.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:28.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:28.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:28.066][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:28.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:28.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:28.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:28.070][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:28.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:28.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:28.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:28.073][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:28.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:28.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:28.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:28.077][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:28.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:28.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:28.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:28.086][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [192288, 0, 192288, C27H54O2, InChI=1S/C27H54O2/c1-3-4-5-6-7-8-9-10-11-12-13-14-15-16-17-18-19-20-21-22-23-24-25-26-27(28)29-2/h3-26H2,1-2H3, ...].
biodb.DEBUG[2025-07-26 16:02:28.087][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:28.088][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:28.088][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:28.092][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:28.093][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:28.094][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:28.095][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:28.096][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:28.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:28.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:28.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:28.100][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:28.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:28.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:28.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:28.103][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:28.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:28.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:28.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:28.107][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:28.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:28.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:28.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:28.111][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:28.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:28.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:28.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:28.114][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:28.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:28.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:28.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:28.118][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:28.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:28.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:28.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:28.122][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:28.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:28.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:28.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:28.125][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:28.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:28.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:28.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:28.129][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:28.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:28.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:28.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:28.132][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:28.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:28.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:28.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:28.136][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:28.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:28.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:28.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:28.140][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:28.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:28.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:28.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:28.143][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:28.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:28.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:28.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:28.147][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:28.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:28.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:28.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:28.154][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:28.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:28.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:28.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:28.158][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:28.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:28.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:28.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:28.162][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:28.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:28.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:28.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:28.166][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-26 16:02:28.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:28.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:28.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:28.169][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-26 16:02:28.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:28.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:28.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:28.173][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:28.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:28.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:28.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:28.177][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:28.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:28.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:28.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:28.180][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:28.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:28.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:28.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:28.184][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:28.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:28.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:28.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:28.187][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-07-26 16:02:28.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-07-26 16:02:28.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:28.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:28.191][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-07-26 16:02:28.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-07-26 16:02:28.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:28.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:28.195][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-07-26 16:02:28.195][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-07-26 16:02:28.196][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-26 16:02:28.197][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-26 16:02:28.198][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-07-26 16:02:28.199][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:28.200][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:28.201][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:28.202][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:28.203][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:28.203][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:28.204][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:28.205][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:28.206][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:28.207][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:28.208][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:28.209][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:28.210][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:28.211][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:28.211][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:28.212][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:28.213][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:28.214][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:28.215][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:28.216][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:28.217][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:28.218][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:28.219][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:28.219][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:28.220][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:28.221][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:28.222][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:28.223][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:28.224][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:28.225][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:28.226][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:28.226][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:28.227][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:28.228][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:28.229][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:28.230][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:28.231][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-26 16:02:28.232][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:28.233][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:28.234][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:28.234][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:28.235][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:28.236][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:28.237][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:28.238][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:28.239][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:28.240][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:28.241][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:28.242][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-07-26 16:02:28.242][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-07-26 16:02:28.243][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:28.244][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:28.245][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:28.246][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:28.247][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:28.248][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:28.249][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:28.250][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:28.250][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:28.251][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:28.252][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:28.253][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:28.254][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:28.255][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:28.256][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:28.257][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:28.257][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:28.258][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:28.259][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:28.260][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:28.261][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:28.262][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:28.263][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:28.264][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:28.265][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:28.265][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:28.266][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:28.267][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:28.268][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:28.269][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:28.270][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:28.271][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:28.272][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:28.273][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:28.273][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:28.274][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:28.275][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:28.276][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:28.277][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-26 16:02:28.278][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:28.279][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:28.280][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:28.281][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:28.282][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:28.282][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:28.283][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:28.284][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:28.285][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:28.286][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:28.287][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:28.288][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-07-26 16:02:28.289][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-07-26 16:02:28.290][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:28.290][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:28.291][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-07-26 16:02:28.292][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-07-26 16:02:28.293][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:28.294][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:28.295][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:28.296][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:28.297][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:28.298][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:28.299][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:28.299][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:28.300][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:28.301][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:28.302][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:28.303][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:28.304][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:28.305][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:28.306][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:28.307][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:28.308][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:28.309][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:28.309][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:28.310][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:28.311][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:28.312][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:28.313][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:28.314][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:28.315][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:28.316][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:28.317][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:28.317][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:28.318][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:28.319][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:28.320][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:28.321][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:28.322][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:28.323][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:28.324][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:28.325][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:28.326][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-26 16:02:28.326][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:28.327][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:28.328][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:28.329][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:28.330][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:28.331][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:28.332][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:28.333][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:28.334][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:28.335][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:28.335][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:28.336][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-07-26 16:02:28.337][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:28.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:28.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:28.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:28.341][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:28.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:28.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:28.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:28.345][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:28.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:28.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:28.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:28.348][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:28.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:28.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:28.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:28.352][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:28.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:28.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:28.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:28.356][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:28.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:28.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:28.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:28.359][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:28.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:28.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:28.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:28.363][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:28.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:28.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:28.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:28.367][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:28.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:28.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:28.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:28.370][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:28.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:28.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:28.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:28.374][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:28.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:28.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:28.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:28.378][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:28.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:28.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:28.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:28.382][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:28.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:28.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:28.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:28.385][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:28.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:28.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:28.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:28.389][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:28.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:28.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:28.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:28.393][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:28.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:28.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:28.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:28.400][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:28.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:28.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:28.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:28.404][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:28.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:28.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:28.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:28.408][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:28.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:28.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:28.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:28.412][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:28.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:28.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:28.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:28.415][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:28.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:28.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:28.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:28.419][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:28.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:28.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:28.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:28.422][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:28.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:28.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:28.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:28.426][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:28.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:28.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:28.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:28.430][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:28.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:28.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:28.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:28.433][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:28.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:28.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:28.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:28.437][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:28.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:28.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:28.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:28.441][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-26 16:02:28.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:28.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:28.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:28.444][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-26 16:02:28.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:28.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:28.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:28.448][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-26 16:02:28.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:28.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:28.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:28.452][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:28.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:28.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:28.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:28.455][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:28.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:28.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:28.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:28.459][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:28.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:28.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:28.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:28.463][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:28.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:28.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:28.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:28.467][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:28.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:28.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:28.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:28.470][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:28.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:28.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:28.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:28.479][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [15440, 0, 15440, C30H50, InChI=1S/C30H50/c1-25(2)15-11-19-29(7)23-13-21-27(5)17-9-10-18-28(6)22-14-24-30(8)20-12-16-26(3)4/h15-18,23-24H,9-14,19-22H2,1-8H3/b27-17+,28-18+,29-23+,30-24+, ...].
biodb.DEBUG[2025-07-26 16:02:28.480][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:28.481][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:28.482][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:28.486][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:28.487][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:28.488][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:28.488][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:28.489][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:28.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:28.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:28.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:28.493][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:28.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:28.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:28.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:28.497][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:28.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:28.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:28.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:28.500][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:28.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:28.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:28.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:28.504][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:28.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:28.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:28.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:28.507][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:28.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:28.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:28.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:28.511][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:28.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:28.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:28.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:28.515][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:28.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:28.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:28.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:28.518][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:28.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:28.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:28.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:28.522][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:28.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:28.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:28.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:28.526][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:28.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:28.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:28.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:28.529][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:28.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:28.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:28.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:28.533][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:28.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:28.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:28.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:28.536][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:28.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:28.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:28.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:28.540][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:28.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:28.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:28.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:28.544][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:28.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:28.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:28.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:28.547][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:28.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:28.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:28.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:28.551][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:28.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:28.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:28.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:28.555][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-26 16:02:28.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:28.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:28.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:28.558][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-26 16:02:28.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:28.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:28.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:28.562][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:28.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:28.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:28.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:28.566][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:28.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:28.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:28.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:28.569][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:28.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:28.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:28.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:28.573][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:28.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:28.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:28.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:28.576][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-07-26 16:02:28.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-07-26 16:02:28.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:28.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:28.580][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-07-26 16:02:28.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-07-26 16:02:28.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:28.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:28.584][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-07-26 16:02:28.585][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-07-26 16:02:28.585][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-26 16:02:28.586][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-26 16:02:28.587][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-07-26 16:02:28.588][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:28.589][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:28.590][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:28.591][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:28.592][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:28.593][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:28.594][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:28.594][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:28.595][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:28.596][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:28.597][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:28.598][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:28.599][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:28.600][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:28.601][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:28.602][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:28.603][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:28.603][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:28.604][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:28.605][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:28.606][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:28.607][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:28.608][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:28.609][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:28.610][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:28.611][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:28.612][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:28.612][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:28.613][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:28.614][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:28.615][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:28.616][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:28.617][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:28.618][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:28.619][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:28.620][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:28.621][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-26 16:02:28.621][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:28.622][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:28.623][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:28.624][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:28.625][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:28.626][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:28.627][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:28.628][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:28.629][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:28.630][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:28.630][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:28.631][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-07-26 16:02:28.632][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-07-26 16:02:28.633][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:28.634][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:28.635][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:28.636][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:28.637][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:28.638][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:28.642][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:28.643][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:28.644][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:28.645][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:28.646][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:28.647][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:28.648][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:28.648][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:28.649][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:28.650][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:28.651][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:28.652][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:28.653][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:28.654][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:28.655][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:28.655][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:28.656][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:28.657][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:28.658][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:28.659][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:28.660][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:28.661][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:28.662][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:28.663][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:28.663][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:28.664][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:28.665][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:28.666][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:28.667][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:28.668][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:28.669][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:28.670][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:28.670][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-26 16:02:28.671][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:28.672][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:28.673][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:28.674][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:28.675][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:28.676][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:28.677][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:28.678][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:28.678][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:28.679][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:28.680][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:28.681][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-07-26 16:02:28.682][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-07-26 16:02:28.683][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:28.684][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:28.685][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-07-26 16:02:28.686][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-07-26 16:02:28.686][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:28.687][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:28.688][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:28.689][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:28.690][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:28.691][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:28.692][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:28.693][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:28.694][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:28.694][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:28.695][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:28.696][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:28.697][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:28.698][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:28.699][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:28.700][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:28.701][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:28.702][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:28.702][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:28.703][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:28.704][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:28.705][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:28.706][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:28.707][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:28.708][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:28.709][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:28.710][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:28.710][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:28.711][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:28.712][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:28.713][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:28.714][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:28.715][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-26 16:02:28.716][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:28.717][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:28.717][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:28.718][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:28.719][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:28.720][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:28.721][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:28.722][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:28.723][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:28.724][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:28.725][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:28.725][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-07-26 16:02:28.726][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:28.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:28.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:28.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:28.730][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:28.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:28.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:28.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:28.734][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:28.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:28.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:28.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:28.737][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:28.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:28.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:28.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:28.741][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:28.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:28.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:28.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:28.744][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:28.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:28.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:28.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:28.748][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:28.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:28.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:28.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:28.752][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:28.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:28.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:28.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:28.755][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:28.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:28.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:28.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:28.759][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:28.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:28.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:28.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:28.763][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:28.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:28.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:28.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:28.766][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:28.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:28.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:28.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:28.770][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:28.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:28.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:28.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:28.774][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:28.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:28.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:28.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:28.777][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:28.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:28.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:28.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:28.781][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:28.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:28.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:28.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:28.785][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:28.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:28.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:28.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:28.788][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:28.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:28.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:28.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:28.792][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:28.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:28.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:28.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:28.796][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:28.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:28.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:28.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:28.799][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:28.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:28.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:28.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:28.803][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:28.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:28.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:28.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:28.807][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:28.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:28.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:28.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:28.811][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:28.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:28.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:28.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:28.814][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-26 16:02:28.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:28.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:28.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:28.818][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-26 16:02:28.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:28.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:28.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:28.822][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-26 16:02:28.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:28.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:28.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:28.825][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:28.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:28.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:28.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:28.829][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:28.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:28.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:28.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:28.833][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:28.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:28.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:28.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:28.836][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:28.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:28.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:28.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:28.840][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:28.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:28.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:28.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:28.844][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:28.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:28.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:28.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:28.853][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [209892, 0, 209892, C30H50, InChI=1S/C30H50/c1-21(2)11-9-12-22(3)23-15-19-30(8)25-13-14-26-27(4,5)17-10-18-28(26,6)24(25)16-20-29(23,30)7/h11,13,22-24,26H,9-10,12,14-20H2,1-8H3/t22-,23+,24+,26+,28-,29+,30-/m1/s1, ...].
biodb.DEBUG[2025-07-26 16:02:28.853][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-07-26 16:02:28.854][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-07-26 16:02:28.857][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:28.858][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:28.859][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:28.863][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:28.864][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:28.865][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:28.865][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-07-26 16:02:28.868][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-07-26 16:02:28.870][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-07-26 16:02:28.872][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/013adb879cee6d4257067df9ba0a8c7b.content.
sched.DEBUG[2025-07-26 16:02:28.873][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-07-26 16:02:28.875][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:28.876][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:28.877][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:28.884][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:28.885][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:28.886][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:28.887][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:28.888][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:28.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:28.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:28.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:28.891][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:28.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:28.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:28.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:28.895][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:28.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:28.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:28.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:28.899][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:28.899][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:28.900][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:28.904][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:28.905][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:28.906][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:28.906][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:28.907][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:28.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:28.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:28.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:28.911][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:28.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:28.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:28.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:28.915][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:28.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:28.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:28.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
sched.DEBUG[2025-07-26 16:02:28.919][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.63*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-07-26 16:02:28.921][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-07-26 16:02:28.924][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/d37a10a1f6afae785eb4d1943c254641.content.
sched.DEBUG[2025-07-26 16:02:28.925][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-07-26 16:02:28.927][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:28.928][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:28.929][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:28.933][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:28.934][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:28.934][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:28.935][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:28.936][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:28.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:28.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:28.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:28.940][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:28.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:28.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:28.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:28.943][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:28.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:28.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:28.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:28.947][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:28.948][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:28.949][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:28.952][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:28.953][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:28.954][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:28.955][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:28.956][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:28.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:28.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:28.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:28.960][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:28.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:28.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:28.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:28.963][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:28.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:28.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:28.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:28.967][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:28.968][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:28.968][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:28.972][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:28.973][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:28.974][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:28.975][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:28.976][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:28.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:28.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:28.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:28.979][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:28.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:28.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:28.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:28.983][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:28.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:28.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:28.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:28.987][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-07-26 16:02:28.988][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:28.989][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:28.990][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:28.993][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:28.994][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:28.995][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:28.996][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:28.997][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:28.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:28.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:29.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:29.001][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:29.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:29.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:29.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:29.004][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:29.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:29.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:29.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:29.008][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:29.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:29.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:29.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:29.011][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:29.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:29.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:29.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:29.015][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:29.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:29.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:29.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:29.019][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:29.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:29.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:29.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:29.022][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:29.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:29.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:29.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:29.026][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:29.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:29.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:29.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:29.030][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:29.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:29.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:29.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:29.033][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:29.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:29.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:29.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:29.037][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:29.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:29.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:29.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:29.041][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:29.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:29.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:29.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:29.044][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:29.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:29.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:29.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:29.048][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:29.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:29.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:29.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:29.052][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:29.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:29.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:29.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:29.055][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:29.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:29.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:29.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:29.059][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:29.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:29.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:29.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:29.063][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-26 16:02:29.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:29.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:29.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:29.066][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-26 16:02:29.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:29.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:29.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:29.070][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:29.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:29.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:29.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:29.074][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:29.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:29.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:29.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:29.077][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:29.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:29.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:29.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:29.081][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:29.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:29.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:29.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:29.084][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-07-26 16:02:29.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-07-26 16:02:29.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:29.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:29.088][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-07-26 16:02:29.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-07-26 16:02:29.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:29.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:29.092][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-07-26 16:02:29.093][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-07-26 16:02:29.094][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-26 16:02:29.094][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-26 16:02:29.095][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-07-26 16:02:29.096][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:29.097][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:29.098][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:29.099][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:29.100][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:29.101][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:29.102][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:29.103][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:29.103][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:29.104][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:29.105][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:29.106][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:29.107][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:29.108][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:29.109][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:29.110][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:29.111][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:29.112][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:29.113][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:29.114][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:29.114][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:29.115][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:29.116][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:29.117][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:29.118][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:29.119][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:29.120][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:29.121][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:29.122][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:29.123][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:29.124][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:29.124][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:29.125][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:29.126][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:29.131][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:29.132][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:29.133][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-26 16:02:29.134][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:29.135][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:29.136][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:29.137][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:29.138][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:29.139][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:29.139][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:29.140][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:29.141][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:29.142][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:29.143][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:29.144][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-07-26 16:02:29.145][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-07-26 16:02:29.146][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:29.147][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:29.148][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:29.149][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:29.149][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:29.150][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:29.151][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:29.152][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:29.153][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:29.154][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:29.155][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:29.156][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:29.156][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:29.157][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:29.158][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:29.159][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:29.160][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:29.161][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:29.162][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:29.163][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:29.164][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:29.164][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:29.165][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:29.166][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:29.167][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:29.168][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:29.169][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:29.170][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:29.171][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:29.172][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:29.172][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:29.173][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:29.174][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:29.175][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:29.176][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:29.177][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:29.178][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:29.179][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:29.180][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-26 16:02:29.181][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:29.181][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:29.182][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:29.183][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:29.184][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:29.185][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:29.186][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:29.187][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:29.188][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:29.189][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:29.189][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:29.190][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-07-26 16:02:29.191][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-07-26 16:02:29.192][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:29.193][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:29.194][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-07-26 16:02:29.195][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-07-26 16:02:29.196][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:29.197][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:29.198][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:29.198][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:29.199][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:29.200][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:29.201][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:29.202][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:29.203][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:29.204][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:29.205][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:29.206][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:29.206][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:29.207][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:29.208][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:29.209][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:29.210][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:29.211][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:29.212][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:29.213][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:29.214][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:29.215][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:29.215][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:29.216][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:29.217][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:29.218][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:29.219][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:29.220][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:29.221][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:29.222][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:29.223][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:29.224][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:29.224][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:29.225][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:29.226][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:29.227][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:29.228][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-26 16:02:29.229][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:29.230][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:29.231][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:29.232][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:29.233][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:29.233][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:29.234][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:29.235][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:29.236][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:29.237][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:29.238][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:29.239][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-07-26 16:02:29.240][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:29.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:29.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:29.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:29.243][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:29.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:29.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:29.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:29.247][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:29.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:29.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:29.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:29.251][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:29.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:29.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:29.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:29.255][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:29.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:29.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:29.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:29.258][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:29.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:29.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:29.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:29.262][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:29.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:29.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:29.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:29.266][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:29.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:29.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:29.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:29.269][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:29.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:29.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:29.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:29.273][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:29.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:29.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:29.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:29.277][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:29.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:29.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:29.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:29.281][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:29.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:29.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:29.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:29.284][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:29.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:29.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:29.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:29.288][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:29.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:29.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:29.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:29.292][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:29.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:29.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:29.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:29.295][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:29.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:29.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:29.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:29.299][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:29.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:29.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:29.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:29.303][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:29.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:29.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:29.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:29.307][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:29.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:29.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:29.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:29.310][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:29.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:29.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:29.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:29.314][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:29.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:29.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:29.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:29.318][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:29.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:29.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:29.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:29.321][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:29.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:29.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:29.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:29.325][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:29.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:29.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:29.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:29.329][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:29.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:29.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:29.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:29.333][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:29.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:29.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:29.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:29.336][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:29.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:29.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:29.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:29.340][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-26 16:02:29.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:29.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:29.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:29.344][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-26 16:02:29.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:29.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:29.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:29.347][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-26 16:02:29.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:29.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:29.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:29.351][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:29.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:29.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:29.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:29.355][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:29.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:29.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:29.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:29.359][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:29.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:29.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:29.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:29.362][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:29.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:29.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:29.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:29.366][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:29.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:29.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:29.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:29.370][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:29.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:29.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:29.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:29.385][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [4781, 0, 4781, C29H40N2O4, InChI=1S/C29H40N2O4/c1-6-18-17-31-10-8-20-14-27(33-3)29(35-5)16-23(20)25(31)12-21(18)11-24-22-15-28(34-4)26(32-2)13-19(22)7-9-30-24/h13-16,18,21,24-25,30H,6-12,17H2,1-5H3/t18-,21-,24+,25-/m0/s1, ...].
biodb.DEBUG[2025-07-26 16:02:29.386][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:29.387][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:29.388][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:29.392][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:29.393][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:29.393][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:29.394][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:29.395][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:29.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:29.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:29.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:29.399][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:29.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:29.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:29.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:29.403][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:29.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:29.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:29.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:29.406][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:29.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:29.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:29.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:29.410][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:29.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:29.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:29.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:29.413][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:29.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:29.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:29.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:29.417][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:29.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:29.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:29.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:29.420][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:29.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:29.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:29.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:29.424][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:29.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:29.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:29.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:29.428][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:29.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:29.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:29.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:29.431][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:29.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:29.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:29.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:29.435][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:29.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:29.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:29.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:29.438][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:29.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:29.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:29.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:29.442][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:29.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:29.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:29.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:29.446][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:29.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:29.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:29.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:29.449][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:29.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:29.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:29.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:29.453][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:29.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:29.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:29.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:29.456][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:29.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:29.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:29.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:29.460][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-26 16:02:29.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:29.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:29.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:29.464][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-26 16:02:29.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:29.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:29.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:29.467][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:29.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:29.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:29.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:29.471][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:29.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:29.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:29.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:29.474][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:29.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:29.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:29.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:29.478][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:29.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:29.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:29.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:29.481][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-07-26 16:02:29.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-07-26 16:02:29.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:29.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:29.485][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-07-26 16:02:29.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-07-26 16:02:29.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:29.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:29.489][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-07-26 16:02:29.490][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-07-26 16:02:29.490][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-26 16:02:29.491][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-26 16:02:29.492][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-07-26 16:02:29.493][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:29.494][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:29.495][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:29.496][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:29.497][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:29.498][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:29.498][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:29.499][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:29.500][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:29.501][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:29.502][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:29.503][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:29.504][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:29.505][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:29.506][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:29.506][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:29.507][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:29.508][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:29.509][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:29.510][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:29.511][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:29.512][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:29.513][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:29.514][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:29.514][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:29.515][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:29.516][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:29.517][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:29.518][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:29.519][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:29.520][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:29.521][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:29.522][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:29.523][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:29.524][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:29.524][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:29.525][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-26 16:02:29.526][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:29.527][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:29.528][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:29.529][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:29.530][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:29.531][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:29.532][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:29.533][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:29.534][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:29.534][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:29.535][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:29.536][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-07-26 16:02:29.537][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-07-26 16:02:29.538][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:29.539][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:29.540][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:29.541][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:29.542][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:29.542][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:29.543][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:29.544][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:29.545][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:29.546][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:29.547][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:29.548][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:29.549][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:29.550][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:29.551][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:29.552][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:29.552][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:29.553][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:29.554][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:29.555][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:29.556][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:29.557][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:29.558][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:29.559][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:29.560][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:29.560][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:29.561][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:29.562][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:29.563][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:29.564][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:29.565][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:29.566][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:29.567][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:29.568][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:29.569][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:29.570][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:29.570][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:29.571][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:29.572][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-26 16:02:29.573][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:29.574][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:29.575][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:29.576][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:29.577][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:29.578][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:29.578][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:29.579][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:29.580][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:29.581][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:29.582][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:29.583][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-07-26 16:02:29.584][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-07-26 16:02:29.585][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:29.586][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:29.587][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-07-26 16:02:29.588][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-07-26 16:02:29.588][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:29.589][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:29.590][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:29.591][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:29.592][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:29.593][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:29.594][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:29.595][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:29.596][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:29.597][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:29.597][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:29.598][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:29.599][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:29.600][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:29.601][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:29.602][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:29.603][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:29.604][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:29.605][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:29.606][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:29.606][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:29.607][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:29.608][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:29.609][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:29.610][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:29.611][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:29.612][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:29.613][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:29.614][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:29.615][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:29.616][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:29.616][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:29.617][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:29.622][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:29.623][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:29.624][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:29.625][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-26 16:02:29.626][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:29.627][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:29.628][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:29.628][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:29.629][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:29.630][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:29.631][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:29.632][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:29.633][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:29.634][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:29.635][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:29.636][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-07-26 16:02:29.637][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:29.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:29.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:29.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:29.640][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:29.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:29.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:29.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:29.644][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:29.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:29.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:29.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:29.647][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:29.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:29.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:29.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:29.651][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:29.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:29.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:29.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:29.655][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:29.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:29.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:29.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:29.658][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:29.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:29.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:29.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:29.662][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:29.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:29.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:29.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:29.665][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:29.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:29.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:29.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:29.669][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:29.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:29.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:29.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:29.673][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:29.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:29.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:29.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:29.676][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:29.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:29.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:29.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:29.680][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:29.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:29.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:29.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:29.684][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:29.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:29.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:29.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:29.687][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:29.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:29.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:29.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:29.691][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:29.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:29.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:29.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:29.694][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:29.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:29.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:29.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:29.698][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:29.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:29.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:29.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:29.702][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:29.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:29.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:29.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:29.705][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:29.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:29.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:29.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:29.709][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:29.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:29.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:29.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:29.713][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:29.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:29.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:29.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:29.716][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:29.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:29.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:29.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:29.720][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:29.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:29.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:29.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:29.723][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:29.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:29.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:29.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:29.727][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:29.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:29.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:29.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:29.731][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:29.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:29.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:29.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:29.734][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-26 16:02:29.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:29.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:29.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:29.738][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-26 16:02:29.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:29.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:29.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:29.742][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-26 16:02:29.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:29.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:29.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:29.745][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:29.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:29.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:29.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:29.749][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:29.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:29.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:29.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:29.753][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:29.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:29.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:29.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:29.756][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:29.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:29.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:29.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:29.760][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:29.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:29.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:29.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:29.764][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:29.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:29.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:29.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:29.773][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [16587, 0, 16587, C27H44O7, InChI=1S/C27H44O7/c1-23(2,32)9-8-22(31)26(5,33)21-7-11-27(34)16-12-18(28)17-13-19(29)20(30)14-24(17,3)15(16)6-10-25(21,27)4/h12,15,17,19-22,29-34H,6-11,13-14H2,1-5H3/t15-,17-,19+,20-,21-,22+,24+,25+,26+,27+/m0/s1, ...].
biodb.DEBUG[2025-07-26 16:02:29.774][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:29.775][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:29.775][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:29.780][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:29.780][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:29.781][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:29.782][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:29.783][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:29.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:29.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:29.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:29.787][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:29.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:29.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:29.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:29.790][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:29.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:29.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:29.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:29.794][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:29.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:29.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:29.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:29.798][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:29.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:29.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:29.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:29.801][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:29.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:29.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:29.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:29.805][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:29.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:29.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:29.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:29.809][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:29.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:29.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:29.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:29.812][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:29.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:29.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:29.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:29.816][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:29.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:29.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:29.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:29.820][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:29.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:29.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:29.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:29.823][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:29.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:29.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:29.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:29.827][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:29.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:29.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:29.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:29.831][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:29.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:29.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:29.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:29.834][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:29.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:29.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:29.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:29.838][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:29.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:29.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:29.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:29.842][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:29.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:29.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:29.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:29.845][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:29.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:29.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:29.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:29.849][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-26 16:02:29.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:29.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:29.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:29.852][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-26 16:02:29.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:29.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:29.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:29.856][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:29.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:29.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:29.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:29.860][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:29.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:29.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:29.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:29.867][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:29.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:29.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:29.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:29.871][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:29.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:29.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:29.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:29.875][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-07-26 16:02:29.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-07-26 16:02:29.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:29.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:29.878][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-07-26 16:02:29.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-07-26 16:02:29.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:29.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:29.882][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-07-26 16:02:29.883][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-07-26 16:02:29.884][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-26 16:02:29.884][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-26 16:02:29.885][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-07-26 16:02:29.886][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:29.887][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:29.888][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:29.889][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:29.890][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:29.891][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:29.892][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:29.893][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:29.893][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:29.894][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:29.895][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:29.896][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:29.897][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:29.898][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:29.899][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:29.900][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:29.901][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:29.901][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:29.902][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:29.903][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:29.904][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:29.905][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:29.906][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:29.907][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:29.908][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:29.909][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:29.909][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:29.910][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:29.911][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:29.912][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:29.913][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:29.914][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:29.915][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:29.916][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:29.916][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:29.917][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:29.918][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-26 16:02:29.919][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:29.920][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:29.921][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:29.922][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:29.923][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:29.924][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:29.924][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:29.925][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:29.926][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:29.927][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:29.928][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:29.929][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-07-26 16:02:29.930][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-07-26 16:02:29.931][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:29.932][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:29.933][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:29.933][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:29.934][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:29.935][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:29.936][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:29.937][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:29.938][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:29.939][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:29.940][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:29.941][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:29.941][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:29.942][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:29.943][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:29.944][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:29.945][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:29.946][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:29.947][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:29.948][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:29.949][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:29.949][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:29.950][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:29.951][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:29.952][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:29.953][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:29.954][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:29.955][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:29.956][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:29.957][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:29.957][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:29.958][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:29.959][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:29.960][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:29.961][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:29.962][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:29.963][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:29.964][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:29.964][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-26 16:02:29.965][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:29.966][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:29.967][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:29.968][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:29.969][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:29.970][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:29.971][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:29.972][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:29.973][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:29.973][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:29.974][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:29.975][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-07-26 16:02:29.976][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-07-26 16:02:29.977][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:29.978][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:29.979][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-07-26 16:02:29.980][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-07-26 16:02:29.981][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:29.982][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:29.982][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:29.983][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:29.984][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:29.985][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:29.986][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:29.987][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:29.988][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:29.989][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:29.989][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:29.990][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:29.991][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:29.992][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:29.993][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:29.994][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:29.995][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:29.996][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:29.997][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:29.997][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:29.998][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:29.999][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:30.000][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:30.001][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:30.002][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:30.003][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:30.004][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:30.005][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:30.006][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:30.007][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:30.007][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:30.008][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:30.009][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-26 16:02:30.010][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:30.011][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:30.012][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:30.013][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:30.014][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:30.015][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:30.015][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:30.016][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:30.017][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:30.018][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:30.019][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:30.020][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-07-26 16:02:30.021][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:30.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:30.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:30.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:30.025][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:30.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:30.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:30.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:30.028][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:30.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:30.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:30.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:30.032][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:30.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:30.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:30.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:30.036][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:30.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:30.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:30.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:30.039][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:30.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:30.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:30.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:30.043][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:30.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:30.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:30.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:30.047][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:30.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:30.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:30.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:30.050][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:30.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:30.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:30.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:30.054][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:30.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:30.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:30.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:30.058][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:30.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:30.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:30.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:30.061][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:30.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:30.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:30.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:30.065][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:30.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:30.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:30.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:30.069][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:30.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:30.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:30.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:30.072][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:30.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:30.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:30.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:30.076][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:30.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:30.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:30.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:30.080][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:30.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:30.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:30.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:30.083][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:30.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:30.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:30.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:30.087][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:30.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:30.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:30.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:30.091][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:30.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:30.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:30.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:30.094][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:30.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:30.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:30.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:30.098][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:30.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:30.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:30.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:30.102][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:30.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:30.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:30.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:30.106][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:30.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:30.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:30.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:30.113][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-26 16:02:30.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:30.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:30.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:30.117][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-26 16:02:30.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:30.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:30.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:30.120][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-26 16:02:30.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:30.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:30.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:30.124][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:30.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:30.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:30.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:30.128][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:30.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:30.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:30.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:30.131][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:30.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:30.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:30.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:30.135][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:30.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:30.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:30.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:30.138][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:30.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:30.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:30.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:30.142][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:30.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:30.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:30.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:30.151][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [19804, 0, 19804, C27H44O7, InChI=1S/C27H44O7/c1-23(2,32)8-5-9-26(33,15-28)22-7-11-27(34)17-12-19(29)18-13-20(30)21(31)14-24(18,3)16(17)6-10-25(22,27)4/h12,16,18,20-22,28,30-34H,5-11,13-15H2,1-4H3/t16-,18-,20+,21-,22-,24+,25+,26+,27+/m0/s1, ...].
biodb.DEBUG[2025-07-26 16:02:30.152][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-07-26 16:02:30.152][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-07-26 16:02:30.155][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:30.156][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:30.157][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:30.161][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:30.162][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:30.162][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:30.163][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-07-26 16:02:30.166][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-07-26 16:02:30.168][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-07-26 16:02:30.170][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/618204bc3e9a685033db1d9be9d78d44.content.
sched.DEBUG[2025-07-26 16:02:30.171][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-07-26 16:02:30.173][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:30.174][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:30.175][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:30.179][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:30.179][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:30.180][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:30.181][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:30.182][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:30.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:30.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:30.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:30.186][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:30.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:30.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:30.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:30.189][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:30.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:30.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:30.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:30.193][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:30.194][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:30.195][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:30.198][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:30.199][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:30.200][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:30.201][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:30.202][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:30.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:30.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:30.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:30.206][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:30.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:30.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:30.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:30.209][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:30.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:30.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:30.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:30.213][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:30.214][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:30.214][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:30.218][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:30.219][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:30.220][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:30.221][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:30.222][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:30.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:30.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:30.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:30.225][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:30.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:30.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:30.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:30.229][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:30.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:30.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:30.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:30.233][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:30.233][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:30.234][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:30.238][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:30.239][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:30.240][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:30.240][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:30.242][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:30.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:30.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:30.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:30.245][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:30.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:30.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:30.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:30.249][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:30.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:30.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:30.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:30.252][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:30.253][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:30.254][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:30.258][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:30.259][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:30.260][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:30.260][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:30.261][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:30.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:30.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:30.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:30.265][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:30.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:30.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:30.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:30.269][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:30.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:30.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:30.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:30.273][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:30.273][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:30.274][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:30.278][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:30.279][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:30.280][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:30.281][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:30.282][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:30.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:30.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:30.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:30.285][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:30.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:30.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:30.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:30.289][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:30.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:30.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:30.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:30.293][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:30.293][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:30.294][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:30.298][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:30.299][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:30.300][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:30.301][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:30.302][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:30.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:30.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:30.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:30.305][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:30.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:30.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:30.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:30.309][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:30.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:30.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:30.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:30.313][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:30.313][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:30.314][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:30.318][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:30.319][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:30.320][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:30.320][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:30.322][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:30.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:30.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:30.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:30.325][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:30.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:30.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:30.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:30.329][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:30.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:30.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:30.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
sched.DEBUG[2025-07-26 16:02:30.333][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-07-26 16:02:30.335][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-07-26 16:02:30.337][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/e0540b0a9d3ba75ce1522ce23f76319e.content.
sched.DEBUG[2025-07-26 16:02:30.338][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-07-26 16:02:30.340][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:30.341][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:30.342][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:30.346][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:30.347][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:30.347][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:30.348][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:30.349][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:30.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:30.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:30.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:30.357][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:30.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:30.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:30.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:30.361][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:30.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:30.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:30.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:30.365][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:30.365][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:30.366][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:30.370][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:30.371][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:30.372][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:30.372][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:30.373][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:30.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:30.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:30.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:30.377][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:30.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:30.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:30.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:30.381][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:30.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:30.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:30.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:30.384][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:30.385][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:30.386][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:30.390][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:30.390][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:30.391][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:30.392][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:30.393][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:30.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:30.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:30.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:30.397][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:30.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:30.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:30.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:30.400][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:30.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:30.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:30.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:30.404][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-07-26 16:02:30.406][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:30.406][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:30.407][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:30.411][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:30.412][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:30.413][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:30.414][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:30.415][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:30.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:30.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:30.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:30.418][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:30.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:30.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:30.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:30.422][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:30.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:30.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:30.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:30.425][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:30.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:30.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:30.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:30.429][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:30.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:30.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:30.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:30.433][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:30.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:30.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:30.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:30.436][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:30.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:30.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:30.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:30.440][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:30.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:30.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:30.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:30.444][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:30.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:30.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:30.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:30.447][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:30.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:30.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:30.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:30.451][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:30.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:30.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:30.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:30.454][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:30.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:30.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:30.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:30.458][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:30.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:30.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:30.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:30.462][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:30.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:30.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:30.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:30.465][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:30.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:30.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:30.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:30.469][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:30.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:30.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:30.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:30.473][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:30.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:30.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:30.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:30.476][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:30.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:30.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:30.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:30.480][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-26 16:02:30.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:30.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:30.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:30.483][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-26 16:02:30.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:30.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:30.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:30.487][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:30.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:30.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:30.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:30.491][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:30.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:30.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:30.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:30.494][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:30.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:30.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:30.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:30.498][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:30.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:30.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:30.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:30.502][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-07-26 16:02:30.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-07-26 16:02:30.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:30.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:30.505][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-07-26 16:02:30.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-07-26 16:02:30.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:30.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:30.509][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-07-26 16:02:30.510][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-07-26 16:02:30.511][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-26 16:02:30.512][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-26 16:02:30.513][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-07-26 16:02:30.513][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:30.514][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:30.515][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:30.516][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:30.517][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:30.518][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:30.519][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:30.520][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:30.521][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:30.522][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:30.523][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:30.523][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:30.524][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:30.525][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:30.526][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:30.527][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:30.528][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:30.529][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:30.530][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:30.531][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:30.532][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:30.533][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:30.533][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:30.534][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:30.535][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:30.536][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:30.537][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:30.538][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:30.539][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:30.540][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:30.541][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:30.542][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:30.542][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:30.543][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:30.544][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:30.545][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:30.546][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-26 16:02:30.547][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:30.548][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:30.549][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:30.550][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:30.551][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:30.552][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:30.552][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:30.553][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:30.554][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:30.555][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:30.556][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:30.557][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-07-26 16:02:30.558][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-07-26 16:02:30.559][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:30.560][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:30.561][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:30.562][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:30.562][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:30.563][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:30.564][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:30.565][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:30.566][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:30.567][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:30.568][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:30.569][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:30.570][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:30.571][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:30.571][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:30.572][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:30.573][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:30.574][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:30.575][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:30.576][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:30.577][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:30.578][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:30.579][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:30.580][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:30.581][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:30.581][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:30.582][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:30.583][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:30.584][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:30.585][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:30.586][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:30.587][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:30.588][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:30.589][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:30.590][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:30.591][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:30.591][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:30.592][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:30.593][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-26 16:02:30.594][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:30.595][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:30.596][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:30.601][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:30.602][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:30.603][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:30.603][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:30.604][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:30.605][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:30.606][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:30.607][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:30.608][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-07-26 16:02:30.609][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-07-26 16:02:30.610][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:30.611][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:30.611][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-07-26 16:02:30.612][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-07-26 16:02:30.613][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:30.614][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:30.615][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:30.616][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:30.617][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:30.618][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:30.619][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:30.619][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:30.620][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:30.621][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:30.622][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:30.623][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:30.624][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:30.625][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:30.626][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:30.627][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:30.627][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:30.628][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:30.629][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:30.630][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:30.631][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:30.632][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:30.633][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:30.634][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:30.635][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:30.635][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:30.636][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:30.637][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:30.638][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:30.639][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:30.640][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:30.641][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:30.642][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:30.643][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:30.643][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:30.644][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:30.645][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-26 16:02:30.646][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:30.647][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:30.648][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:30.649][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:30.650][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:30.650][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:30.651][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:30.652][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:30.653][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:30.654][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:30.655][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:30.656][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-07-26 16:02:30.657][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:30.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:30.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:30.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:30.660][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:30.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:30.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:30.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:30.664][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:30.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:30.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:30.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:30.668][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:30.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:30.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:30.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:30.671][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:30.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:30.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:30.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:30.675][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:30.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:30.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:30.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:30.679][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:30.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:30.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:30.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:30.682][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:30.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:30.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:30.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:30.686][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:30.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:30.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:30.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:30.690][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:30.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:30.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:30.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:30.693][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:30.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:30.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:30.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:30.697][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:30.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:30.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:30.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:30.701][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:30.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:30.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:30.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:30.704][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:30.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:30.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:30.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:30.708][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:30.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:30.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:30.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:30.712][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:30.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:30.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:30.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:30.715][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:30.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:30.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:30.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:30.719][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:30.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:30.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:30.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:30.723][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:30.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:30.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:30.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:30.726][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:30.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:30.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:30.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:30.730][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:30.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:30.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:30.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:30.734][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:30.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:30.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:30.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:30.737][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:30.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:30.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:30.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:30.741][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:30.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:30.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:30.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:30.745][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:30.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:30.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:30.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:30.748][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:30.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:30.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:30.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:30.752][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:30.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:30.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:30.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:30.756][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-26 16:02:30.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:30.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:30.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:30.759][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-26 16:02:30.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:30.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:30.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:30.763][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-26 16:02:30.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:30.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:30.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:30.767][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:30.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:30.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:30.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:30.771][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:30.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:30.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:30.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:30.774][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:30.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:30.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:30.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:30.778][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:30.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:30.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:30.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:30.782][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:30.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:30.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:30.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:30.785][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:30.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:30.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:30.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:30.795][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [7799, 0, 7799, C16H31N2O8P, InChI=1S/C16H28N2O4.H3O4P/c1-5-12(6-2)22-14-9-11(16(20)21-7-3)8-13(17)15(14)18-10(4)19;1-5(2,3)4/h9,12-15H,5-8,17H2,1-4H3,(H,18,19);(H3,1,2,3,4)/t13-,14+,15+;/m0./s1, ...].
biodb.DEBUG[2025-07-26 16:02:30.796][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:30.796][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:30.797][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:30.801][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:30.802][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:30.803][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:30.804][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:30.805][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:30.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:30.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:30.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:30.809][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:30.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:30.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:30.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:30.812][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:30.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:30.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:30.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:30.816][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:30.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:30.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:30.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:30.820][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:30.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:30.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:30.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:30.823][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:30.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:30.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:30.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:30.827][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:30.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:30.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:30.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:30.831][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:30.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:30.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:30.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:30.834][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:30.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:30.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:30.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:30.838][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:30.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:30.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:30.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:30.845][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:30.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:30.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:30.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:30.849][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:30.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:30.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:30.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:30.853][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:30.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:30.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:30.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:30.856][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:30.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:30.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:30.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:30.860][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:30.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:30.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:30.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:30.863][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:30.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:30.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:30.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:30.867][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:30.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:30.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:30.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:30.871][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:30.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:30.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:30.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:30.874][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-26 16:02:30.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:30.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:30.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:30.878][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-26 16:02:30.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:30.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:30.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:30.881][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:30.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:30.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:30.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:30.885][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:30.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:30.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:30.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:30.888][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:30.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:30.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:30.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:30.892][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:30.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:30.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:30.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:30.896][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-07-26 16:02:30.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-07-26 16:02:30.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:30.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:30.899][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-07-26 16:02:30.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-07-26 16:02:30.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:30.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:30.903][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-07-26 16:02:30.904][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-07-26 16:02:30.904][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-26 16:02:30.905][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-26 16:02:30.906][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-07-26 16:02:30.907][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:30.908][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:30.909][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:30.910][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:30.911][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:30.912][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:30.912][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:30.913][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:30.914][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:30.915][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:30.916][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:30.917][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:30.918][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:30.919][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:30.920][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:30.920][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:30.921][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:30.922][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:30.923][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:30.924][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:30.925][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:30.926][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:30.927][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:30.928][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:30.928][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:30.929][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:30.930][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:30.931][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:30.932][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:30.933][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:30.934][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:30.935][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:30.936][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:30.936][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:30.937][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:30.938][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:30.939][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-26 16:02:30.940][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:30.941][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:30.942][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:30.943][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:30.944][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:30.944][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:30.945][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:30.946][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:30.947][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:30.948][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:30.949][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:30.950][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-07-26 16:02:30.951][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-07-26 16:02:30.952][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:30.952][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:30.953][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:30.954][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:30.955][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:30.956][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:30.957][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:30.958][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:30.959][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:30.960][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:30.960][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:30.961][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:30.962][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:30.963][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:30.964][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:30.965][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:30.966][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:30.967][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:30.968][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:30.968][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:30.969][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:30.970][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:30.971][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:30.972][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:30.973][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:30.974][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:30.975][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:30.976][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:30.976][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:30.977][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:30.978][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:30.979][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:30.980][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:30.981][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:30.982][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:30.983][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:30.984][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:30.985][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:30.985][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-26 16:02:30.986][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:30.987][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:30.988][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:30.989][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:30.990][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:30.991][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:30.992][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:30.993][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:30.994][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:30.995][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:30.995][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:30.996][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-07-26 16:02:30.997][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-07-26 16:02:30.998][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:30.999][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:31.000][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-07-26 16:02:31.001][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-07-26 16:02:31.002][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:31.003][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:31.004][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:31.005][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:31.005][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:31.006][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:31.007][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:31.008][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:31.009][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:31.010][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:31.011][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:31.012][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:31.013][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:31.014][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:31.014][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:31.015][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:31.016][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:31.017][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:31.018][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:31.019][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:31.020][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:31.021][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:31.022][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:31.023][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:31.023][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:31.024][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:31.025][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:31.026][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:31.027][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:31.028][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:31.029][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:31.030][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:31.031][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-26 16:02:31.032][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:31.033][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:31.033][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:31.034][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:31.035][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:31.036][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:31.037][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:31.038][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:31.039][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:31.040][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:31.041][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:31.042][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-07-26 16:02:31.043][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:31.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:31.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:31.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:31.046][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:31.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:31.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:31.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:31.050][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:31.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:31.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:31.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:31.054][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:31.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:31.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:31.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:31.057][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:31.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:31.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:31.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:31.061][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:31.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:31.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:31.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:31.065][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:31.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:31.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:31.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:31.068][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:31.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:31.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:31.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:31.072][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:31.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:31.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:31.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:31.076][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:31.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:31.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:31.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:31.080][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:31.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:31.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:31.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:31.083][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:31.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:31.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:31.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:31.091][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:31.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:31.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:31.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:31.095][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:31.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:31.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:31.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:31.098][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:31.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:31.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:31.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:31.102][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:31.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:31.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:31.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:31.106][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:31.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:31.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:31.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:31.109][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:31.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:31.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:31.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:31.113][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:31.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:31.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:31.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:31.116][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:31.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:31.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:31.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:31.120][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:31.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:31.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:31.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:31.124][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:31.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:31.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:31.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:31.127][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:31.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:31.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:31.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:31.131][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:31.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:31.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:31.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:31.135][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-26 16:02:31.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:31.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:31.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:31.138][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-26 16:02:31.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:31.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:31.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:31.142][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-26 16:02:31.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:31.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:31.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:31.146][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:31.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:31.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:31.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:31.149][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:31.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:31.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:31.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:31.153][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:31.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:31.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:31.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:31.157][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:31.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:31.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:31.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:31.160][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:31.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:31.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:31.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:31.164][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:31.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:31.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:31.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:31.173][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [71954, 0, 71954, C18H21F3N6O2, InChI=1S/C18H21F3N6O2/c19-18(20,21)13-9-15(22)23-11-12(13)14-10-16(26-1-5-28-6-2-26)25-17(24-14)27-3-7-29-8-4-27/h9-11H,1-8H2,(H2,22,23), ...].
biodb.DEBUG[2025-07-26 16:02:31.174][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:31.174][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:31.175][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:31.179][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:31.180][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:31.181][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:31.182][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:31.183][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:31.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:31.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:31.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:31.187][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:31.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:31.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:31.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:31.190][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:31.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:31.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:31.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:31.194][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:31.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:31.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:31.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:31.198][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:31.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:31.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:31.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:31.201][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:31.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:31.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:31.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:31.205][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:31.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:31.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:31.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:31.208][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:31.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:31.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:31.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:31.212][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:31.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:31.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:31.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:31.216][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:31.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:31.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:31.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:31.219][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:31.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:31.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:31.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:31.223][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:31.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:31.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:31.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:31.227][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:31.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:31.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:31.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:31.230][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:31.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:31.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:31.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:31.234][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:31.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:31.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:31.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:31.238][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:31.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:31.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:31.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:31.242][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:31.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:31.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:31.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:31.245][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:31.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:31.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:31.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:31.249][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-26 16:02:31.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:31.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:31.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:31.252][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-26 16:02:31.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:31.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:31.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:31.256][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:31.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:31.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:31.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:31.260][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:31.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:31.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:31.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:31.263][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:31.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:31.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:31.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:31.267][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:31.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:31.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:31.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:31.271][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-07-26 16:02:31.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-07-26 16:02:31.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:31.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:31.274][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-07-26 16:02:31.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-07-26 16:02:31.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:31.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:31.278][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-07-26 16:02:31.279][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-07-26 16:02:31.280][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-26 16:02:31.280][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-26 16:02:31.281][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-07-26 16:02:31.282][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:31.283][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:31.284][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:31.285][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:31.286][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:31.287][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:31.288][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:31.289][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:31.290][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:31.290][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:31.291][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:31.292][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:31.293][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:31.294][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:31.295][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:31.296][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:31.297][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:31.298][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:31.299][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:31.300][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:31.300][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:31.301][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:31.302][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:31.303][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:31.304][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:31.305][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:31.306][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:31.307][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:31.308][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:31.309][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:31.309][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:31.310][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:31.311][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:31.312][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:31.313][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:31.314][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:31.315][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-26 16:02:31.316][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:31.317][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:31.318][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:31.318][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:31.319][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:31.320][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:31.321][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:31.322][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:31.323][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:31.324][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:31.325][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:31.326][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-07-26 16:02:31.327][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-07-26 16:02:31.327][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:31.328][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:31.333][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:31.334][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:31.335][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:31.336][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:31.337][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:31.338][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:31.339][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:31.339][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:31.340][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:31.341][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:31.342][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:31.343][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:31.344][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:31.345][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:31.346][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:31.347][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:31.347][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:31.348][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:31.349][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:31.350][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:31.351][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:31.352][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:31.353][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:31.354][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:31.354][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:31.355][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:31.356][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:31.357][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:31.358][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:31.359][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:31.360][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:31.361][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:31.362][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:31.363][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:31.363][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:31.364][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:31.365][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-26 16:02:31.366][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:31.367][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:31.368][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:31.369][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:31.370][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:31.370][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:31.371][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:31.372][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:31.373][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:31.374][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:31.375][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:31.376][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-07-26 16:02:31.377][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-07-26 16:02:31.378][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:31.378][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:31.379][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-07-26 16:02:31.380][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-07-26 16:02:31.381][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:31.382][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:31.383][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:31.384][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:31.385][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:31.386][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:31.386][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:31.387][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:31.388][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:31.389][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:31.390][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:31.391][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:31.392][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:31.393][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:31.394][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:31.394][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:31.395][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:31.396][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:31.397][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:31.398][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:31.399][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:31.400][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:31.401][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:31.402][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:31.402][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:31.403][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:31.404][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:31.405][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:31.406][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:31.407][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:31.408][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:31.409][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:31.409][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-26 16:02:31.410][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:31.411][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:31.412][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:31.413][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:31.414][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:31.415][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:31.416][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:31.417][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:31.417][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:31.418][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:31.419][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:31.420][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-07-26 16:02:31.421][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:31.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:31.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:31.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:31.425][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:31.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:31.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:31.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:31.428][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:31.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:31.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:31.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:31.432][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:31.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:31.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:31.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:31.436][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:31.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:31.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:31.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:31.439][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:31.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:31.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:31.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:31.443][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:31.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:31.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:31.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:31.447][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:31.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:31.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:31.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:31.450][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:31.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:31.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:31.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:31.454][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:31.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:31.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:31.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:31.458][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:31.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:31.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:31.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:31.461][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:31.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:31.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:31.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:31.465][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:31.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:31.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:31.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:31.469][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:31.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:31.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:31.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:31.472][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:31.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:31.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:31.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:31.476][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:31.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:31.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:31.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:31.480][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:31.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:31.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:31.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:31.483][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:31.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:31.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:31.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:31.487][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:31.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:31.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:31.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:31.491][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:31.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:31.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:31.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:31.494][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:31.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:31.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:31.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:31.498][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:31.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:31.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:31.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:31.502][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:31.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:31.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:31.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:31.505][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:31.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:31.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:31.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:31.509][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-26 16:02:31.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:31.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:31.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:31.513][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-26 16:02:31.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:31.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:31.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:31.517][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-26 16:02:31.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:31.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:31.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:31.520][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:31.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:31.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:31.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:31.524][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:31.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:31.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:31.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:31.528][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:31.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:31.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:31.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:31.531][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:31.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:31.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:31.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:31.535][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:31.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:31.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:31.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:31.539][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:31.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:31.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:31.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:31.547][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [197612, 0, 197612, C18H18O9S, InChI=1S/C18H18O9S/c1-7-3-9(19)13-11(4-7)27-16-8(14(13)21)5-12(28-16)18(25,17(24)26-2)6-10(20)15(22)23/h3-4,10,12,19-20,25H,5-6H2,1-2H3,(H,22,23)/t10-,12+,18?/m1/s1, ...].
biodb.DEBUG[2025-07-26 16:02:31.548][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-07-26 16:02:31.549][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2025-07-26 16:02:31.555][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:31.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:31.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:31.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:31.558][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:31.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:31.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:31.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:31.562][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:31.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:31.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:31.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:31.566][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:31.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:31.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:31.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:31.569][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:31.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:31.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:31.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:31.577][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:31.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:31.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:31.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:31.581][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:31.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:31.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:31.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:31.584][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:31.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:31.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:31.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:31.588][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:31.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:31.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:31.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:31.591][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:31.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:31.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:31.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:31.595][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:31.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:31.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:31.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:31.599][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:31.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:31.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:31.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:31.604][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:31.605][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:31.606][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:31.610][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:31.611][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:31.612][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:31.612][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-07-26 16:02:31.615][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-07-26 16:02:31.617][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-07-26 16:02:31.619][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/2e865a03592d6effdf242ff63104f35a.content.
sched.DEBUG[2025-07-26 16:02:31.620][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
sched.DEBUG[2025-07-26 16:02:31.622][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-07-26 16:02:31.625][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-07-26 16:02:31.627][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/f0c73645ca32490f91d503a462d812b2.content.
sched.DEBUG[2025-07-26 16:02:31.628][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-07-26 16:02:31.630][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:31.631][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:31.632][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:31.635][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:31.636][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:31.637][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:31.638][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:31.639][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:31.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:31.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:31.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:31.643][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:31.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:31.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:31.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:31.646][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:31.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:31.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:31.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:31.650][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:31.651][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:31.652][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:31.656][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:31.656][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:31.657][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:31.658][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:31.659][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:31.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:31.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:31.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:31.663][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:31.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:31.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:31.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:31.666][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:31.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:31.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:31.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:31.670][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:31.671][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:31.672][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:31.675][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:31.676][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:31.677][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:31.678][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:31.679][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:31.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:31.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:31.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:31.683][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:31.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:31.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:31.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:31.686][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:31.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:31.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:31.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:31.690][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-07-26 16:02:31.691][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:31.692][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:31.693][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:31.697][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:31.698][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:31.699][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:31.699][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:31.700][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:31.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:31.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:31.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:31.704][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:31.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:31.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:31.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:31.708][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:31.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:31.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:31.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:31.711][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:31.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:31.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:31.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:31.715][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:31.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:31.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:31.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:31.719][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:31.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:31.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:31.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:31.722][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:31.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:31.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:31.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:31.726][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:31.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:31.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:31.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:31.730][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:31.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:31.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:31.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:31.733][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:31.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:31.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:31.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:31.737][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:31.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:31.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:31.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:31.741][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:31.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:31.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:31.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:31.744][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:31.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:31.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:31.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:31.748][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:31.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:31.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:31.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:31.752][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:31.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:31.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:31.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:31.755][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:31.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:31.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:31.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:31.759][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:31.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:31.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:31.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:31.763][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:31.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:31.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:31.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:31.766][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-26 16:02:31.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:31.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:31.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:31.770][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-26 16:02:31.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:31.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:31.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:31.773][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:31.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:31.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:31.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:31.777][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:31.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:31.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:31.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:31.781][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:31.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:31.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:31.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:31.784][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:31.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:31.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:31.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:31.788][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-07-26 16:02:31.789][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-07-26 16:02:31.790][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-26 16:02:31.791][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-26 16:02:31.792][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-07-26 16:02:31.792][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:31.793][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:31.794][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:31.795][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:31.796][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:31.797][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:31.798][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:31.799][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:31.800][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:31.801][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:31.802][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:31.802][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:31.803][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:31.804][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:31.805][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:31.806][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:31.807][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:31.808][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:31.809][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:31.810][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:31.811][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:31.812][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:31.812][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:31.813][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:31.814][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:31.815][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:31.816][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:31.817][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:31.818][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:31.823][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:31.824][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:31.825][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:31.826][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:31.827][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:31.828][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:31.829][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:31.830][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-26 16:02:31.831][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:31.831][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:31.832][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:31.833][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:31.834][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:31.835][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:31.836][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:31.837][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:31.838][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:31.839][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:31.839][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:31.840][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:31.841][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:31.842][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:31.843][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:31.844][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:31.845][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:31.846][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:31.847][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:31.847][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:31.848][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:31.849][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:31.850][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:31.851][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:31.852][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:31.853][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:31.854][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:31.855][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:31.855][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:31.856][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:31.857][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:31.858][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:31.859][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:31.860][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:31.861][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:31.862][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:31.863][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:31.863][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:31.864][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:31.865][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:31.866][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:31.867][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:31.868][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:31.869][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:31.870][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:31.871][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:31.871][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:31.872][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-26 16:02:31.873][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:31.874][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:31.875][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:31.876][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:31.877][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:31.878][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:31.879][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:31.880][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:31.881][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:31.881][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:31.882][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:31.883][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-07-26 16:02:31.884][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-07-26 16:02:31.885][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:31.886][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:31.887][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:31.888][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:31.889][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:31.890][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:31.890][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:31.891][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:31.892][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:31.893][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:31.894][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:31.895][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:31.896][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:31.897][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:31.898][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:31.899][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:31.899][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:31.900][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:31.901][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:31.902][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:31.903][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:31.904][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:31.905][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:31.906][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:31.906][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:31.907][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:31.908][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:31.909][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:31.910][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:31.911][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:31.912][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:31.913][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:31.914][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:31.915][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:31.915][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:31.916][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:31.917][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-26 16:02:31.918][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:31.919][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:31.920][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:31.921][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:31.922][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:31.923][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:31.923][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:31.924][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:31.925][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:31.926][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:31.927][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:31.928][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-07-26 16:02:31.929][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:31.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:31.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:31.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:31.933][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:31.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:31.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:31.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:31.936][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:31.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:31.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:31.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:31.940][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:31.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:31.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:31.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:31.944][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:31.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:31.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:31.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:31.947][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:31.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:31.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:31.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:31.951][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:31.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:31.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:31.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:31.955][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:31.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:31.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:31.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:31.958][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:31.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:31.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:31.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:31.962][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:31.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:31.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:31.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:31.966][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:31.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:31.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:31.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:31.969][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:31.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:31.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:31.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:31.973][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:31.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:31.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:31.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:31.977][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:31.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:31.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:31.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:31.981][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:31.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:31.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:31.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:31.985][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:31.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:31.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:31.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:31.988][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:31.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:31.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:31.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:31.992][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:31.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:31.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:31.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:31.996][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:31.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:31.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:31.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:31.999][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:32.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:32.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:32.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:32.003][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:32.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:32.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:32.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:32.007][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:32.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:32.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:32.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:32.011][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:32.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:32.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:32.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:32.014][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:32.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:32.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:32.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:32.018][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:32.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:32.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:32.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:32.022][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:32.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:32.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:32.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:32.025][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:32.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:32.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:32.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:32.029][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-26 16:02:32.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:32.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:32.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:32.033][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-26 16:02:32.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:32.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:32.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:32.037][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-26 16:02:32.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:32.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:32.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:32.040][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:32.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:32.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:32.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:32.044][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:32.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:32.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:32.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:32.048][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:32.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:32.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:32.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:32.052][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:32.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:32.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:32.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:32.055][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:32.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:32.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:32.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:32.059][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:32.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:32.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:32.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:32.072][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [4648, 0, 4648, C30H50, InChI=1S/C30H50/c1-20(2)21-12-17-27(5)22(21)13-18-29(7)24(27)10-11-25-28(6)16-9-15-26(3,4)23(28)14-19-30(25,29)8/h21-25H,1,9-19H2,2-8H3/t21-,22+,23+,24-,25-,27+,28+,29-,30-/m1/s1, ...].
biodb.DEBUG[2025-07-26 16:02:32.074][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:32.074][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:32.075][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:32.079][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:32.080][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:32.081][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:32.082][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:32.083][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:32.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:32.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:32.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:32.086][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:32.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:32.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:32.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:32.090][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:32.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:32.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:32.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:32.093][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:32.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:32.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:32.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:32.097][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:32.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:32.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:32.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:32.101][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:32.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:32.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:32.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:32.104][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:32.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:32.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:32.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:32.108][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:32.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:32.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:32.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:32.111][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:32.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:32.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:32.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:32.115][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:32.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:32.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:32.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:32.119][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:32.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:32.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:32.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:32.122][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:32.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:32.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:32.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:32.126][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:32.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:32.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:32.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:32.129][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:32.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:32.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:32.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:32.133][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:32.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:32.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:32.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:32.137][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:32.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:32.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:32.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:32.140][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:32.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:32.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:32.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:32.144][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:32.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:32.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:32.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:32.148][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-26 16:02:32.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:32.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:32.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:32.151][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-26 16:02:32.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:32.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:32.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:32.155][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:32.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:32.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:32.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:32.158][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:32.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:32.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:32.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:32.162][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:32.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:32.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:32.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:32.166][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:32.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:32.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:32.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:32.169][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-07-26 16:02:32.170][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-07-26 16:02:32.171][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-26 16:02:32.172][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-26 16:02:32.173][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-07-26 16:02:32.174][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:32.174][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:32.175][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:32.176][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:32.177][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:32.178][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:32.179][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:32.180][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:32.181][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:32.182][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:32.182][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:32.183][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:32.184][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:32.185][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:32.186][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:32.187][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:32.188][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:32.189][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:32.190][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:32.190][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:32.191][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:32.192][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:32.193][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:32.194][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:32.195][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:32.196][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:32.197][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:32.198][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:32.199][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:32.199][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:32.200][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:32.201][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:32.202][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:32.203][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:32.204][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:32.205][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:32.206][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-26 16:02:32.207][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:32.208][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:32.208][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:32.209][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:32.210][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:32.211][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:32.212][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:32.213][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:32.214][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:32.215][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:32.216][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:32.217][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:32.218][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:32.218][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:32.219][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:32.220][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:32.221][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:32.222][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:32.223][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:32.224][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:32.225][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:32.226][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:32.226][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:32.227][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:32.228][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:32.229][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:32.230][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:32.231][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:32.232][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:32.233][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:32.234][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:32.235][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:32.236][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:32.236][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:32.237][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:32.238][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:32.239][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:32.240][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:32.241][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:32.242][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:32.243][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:32.244][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:32.244][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:32.245][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:32.246][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:32.247][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:32.248][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:32.249][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-26 16:02:32.250][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:32.251][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:32.252][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:32.253][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:32.254][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:32.254][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:32.255][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:32.256][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:32.257][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:32.258][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:32.259][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:32.260][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-07-26 16:02:32.261][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-07-26 16:02:32.262][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:32.263][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:32.263][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:32.264][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:32.265][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:32.266][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:32.267][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:32.268][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:32.269][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:32.270][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:32.271][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:32.271][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:32.272][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:32.273][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:32.274][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:32.275][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:32.276][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:32.277][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:32.278][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:32.279][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:32.280][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:32.281][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:32.281][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:32.282][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:32.283][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:32.284][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:32.285][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:32.286][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:32.287][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:32.288][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:32.289][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:32.289][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:32.290][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:32.291][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:32.292][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:32.293][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:32.294][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-26 16:02:32.295][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:32.296][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:32.297][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:32.298][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:32.299][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:32.299][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:32.300][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:32.301][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:32.302][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:32.303][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:32.304][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:32.305][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-07-26 16:02:32.306][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:32.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:32.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:32.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:32.313][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:32.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:32.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:32.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:32.317][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:32.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:32.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:32.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:32.321][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:32.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:32.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:32.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:32.324][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:32.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:32.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:32.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:32.328][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:32.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:32.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:32.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:32.332][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:32.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:32.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:32.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:32.335][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:32.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:32.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:32.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:32.339][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:32.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:32.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:32.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:32.343][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:32.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:32.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:32.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:32.346][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:32.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:32.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:32.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:32.350][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:32.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:32.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:32.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:32.353][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:32.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:32.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:32.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:32.357][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:32.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:32.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:32.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:32.361][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:32.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:32.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:32.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:32.364][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:32.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:32.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:32.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:32.368][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:32.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:32.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:32.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:32.372][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:32.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:32.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:32.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:32.375][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:32.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:32.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:32.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:32.379][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:32.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:32.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:32.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:32.382][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:32.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:32.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:32.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:32.386][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:32.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:32.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:32.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:32.390][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:32.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:32.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:32.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:32.393][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:32.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:32.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:32.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:32.397][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:32.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:32.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:32.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:32.401][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:32.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:32.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:32.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:32.404][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:32.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:32.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:32.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:32.408][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-26 16:02:32.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:32.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:32.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:32.411][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-26 16:02:32.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:32.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:32.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:32.415][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-26 16:02:32.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:32.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:32.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:32.419][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:32.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:32.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:32.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:32.422][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:32.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:32.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:32.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:32.426][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:32.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:32.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:32.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:32.430][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:32.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:32.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:32.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:32.433][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:32.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:32.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:32.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:32.437][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:32.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:32.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:32.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:32.446][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [15440, 0, 15440, C30H50, InChI=1S/C30H50/c1-25(2)15-11-19-29(7)23-13-21-27(5)17-9-10-18-28(6)22-14-24-30(8)20-12-16-26(3)4/h15-18,23-24H,9-14,19-22H2,1-8H3/b27-17+,28-18+,29-23+,30-24+, ...].
biodb.DEBUG[2025-07-26 16:02:32.447][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:32.448][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:32.449][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:32.453][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:32.454][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:32.455][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:32.455][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:32.457][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:32.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:32.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:32.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:32.460][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:32.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:32.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:32.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:32.464][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:32.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:32.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:32.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:32.468][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:32.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:32.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:32.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:32.471][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:32.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:32.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:32.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:32.475][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:32.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:32.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:32.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:32.478][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:32.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:32.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:32.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:32.482][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:32.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:32.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:32.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:32.486][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:32.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:32.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:32.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:32.489][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:32.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:32.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:32.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:32.493][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:32.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:32.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:32.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:32.497][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:32.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:32.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:32.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:32.500][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:32.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:32.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:32.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:32.504][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:32.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:32.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:32.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:32.508][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:32.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:32.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:32.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:32.511][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:32.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:32.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:32.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:32.515][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:32.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:32.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:32.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:32.519][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:32.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:32.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:32.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:32.522][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-26 16:02:32.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:32.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:32.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:32.526][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-26 16:02:32.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:32.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:32.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:32.530][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:32.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:32.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:32.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:32.533][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:32.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:32.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:32.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:32.537][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:32.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:32.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:32.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:32.541][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:32.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:32.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:32.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:32.545][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-07-26 16:02:32.545][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-07-26 16:02:32.546][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-26 16:02:32.547][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-26 16:02:32.548][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-07-26 16:02:32.553][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:32.554][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:32.555][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:32.556][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:32.557][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:32.558][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:32.559][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:32.559][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:32.560][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:32.561][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:32.562][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:32.563][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:32.564][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:32.565][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:32.566][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:32.567][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:32.567][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:32.568][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:32.569][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:32.570][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:32.571][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:32.572][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:32.573][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:32.574][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:32.574][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:32.575][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:32.576][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:32.577][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:32.578][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:32.579][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:32.580][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:32.581][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:32.582][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:32.583][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:32.583][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:32.584][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:32.585][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-26 16:02:32.586][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:32.587][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:32.588][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:32.589][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:32.590][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:32.591][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:32.591][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:32.592][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:32.593][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:32.594][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:32.595][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:32.596][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:32.597][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:32.598][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:32.599][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:32.599][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:32.600][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:32.601][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:32.602][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:32.603][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:32.604][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:32.605][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:32.606][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:32.607][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:32.608][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:32.608][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:32.609][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:32.610][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:32.611][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:32.612][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:32.613][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:32.614][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:32.615][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:32.616][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:32.616][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:32.617][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:32.618][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:32.619][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:32.620][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:32.621][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:32.622][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:32.623][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:32.624][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:32.624][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:32.625][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:32.626][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:32.627][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:32.628][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-26 16:02:32.629][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:32.630][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:32.631][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:32.632][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:32.632][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:32.633][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:32.634][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:32.635][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:32.636][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:32.637][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:32.638][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:32.639][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-07-26 16:02:32.640][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-07-26 16:02:32.640][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:32.641][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:32.642][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:32.643][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:32.644][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:32.645][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:32.646][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:32.647][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:32.648][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:32.648][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:32.649][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:32.650][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:32.651][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:32.652][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:32.653][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:32.654][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:32.655][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:32.656][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:32.656][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:32.657][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:32.658][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:32.659][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:32.660][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:32.661][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:32.662][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:32.663][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:32.664][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:32.664][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:32.665][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:32.666][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:32.667][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:32.668][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:32.669][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-26 16:02:32.670][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:32.671][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:32.672][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:32.672][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:32.673][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:32.674][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:32.675][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:32.676][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:32.677][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:32.678][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:32.679][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:32.680][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-07-26 16:02:32.681][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:32.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:32.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:32.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:32.684][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:32.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:32.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:32.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:32.688][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:32.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:32.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:32.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:32.692][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:32.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:32.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:32.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:32.695][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:32.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:32.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:32.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:32.699][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:32.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:32.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:32.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:32.703][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:32.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:32.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:32.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:32.706][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:32.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:32.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:32.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:32.710][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:32.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:32.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:32.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:32.714][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:32.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:32.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:32.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:32.717][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:32.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:32.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:32.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:32.721][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:32.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:32.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:32.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:32.725][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:32.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:32.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:32.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:32.728][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:32.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:32.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:32.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:32.732][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:32.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:32.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:32.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:32.736][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:32.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:32.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:32.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:32.739][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:32.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:32.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:32.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:32.743][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:32.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:32.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:32.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:32.747][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:32.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:32.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:32.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:32.750][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:32.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:32.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:32.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:32.754][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:32.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:32.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:32.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:32.758][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:32.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:32.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:32.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:32.762][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:32.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:32.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:32.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:32.765][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:32.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:32.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:32.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:32.769][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-26 16:02:32.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:32.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:32.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:32.773][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-26 16:02:32.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:32.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:32.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:32.776][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-26 16:02:32.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:32.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:32.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:32.780][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:32.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:32.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:32.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:32.784][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:32.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:32.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:32.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:32.787][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:32.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:32.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:32.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:32.791][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:32.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:32.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:32.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:32.799][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:32.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:32.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:32.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:32.802][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:32.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:32.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:32.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:32.811][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [62447, 0, 62447, C30H50, InChI=1S/C30H50/c1-21(2)11-9-12-22(3)23-15-19-29(7)24(23)13-14-26-28(6)18-10-17-27(4,5)25(28)16-20-30(26,29)8/h11,23-26H,3,9-10,12-20H2,1-2,4-8H3/t23-,24-,25+,26-,28+,29-,30-/m1/s1, ...].
biodb.DEBUG[2025-07-26 16:02:32.812][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-07-26 16:02:32.813][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-07-26 16:02:32.815][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:32.816][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:32.817][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:32.821][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:32.822][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:32.823][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:32.824][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-07-26 16:02:32.826][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.29*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-07-26 16:02:32.828][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-07-26 16:02:32.831][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/aad5aa7c63b98774a5df46d96a4e7cac.content.
sched.DEBUG[2025-07-26 16:02:32.832][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-07-26 16:02:32.834][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:32.835][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:32.835][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:32.839][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:32.840][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:32.841][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:32.842][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:32.843][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:32.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:32.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:32.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:32.846][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:32.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:32.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:32.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:32.850][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:32.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:32.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:32.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:32.854][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:32.855][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:32.855][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:32.859][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:32.860][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:32.861][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:32.862][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:32.863][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:32.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:32.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:32.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:32.866][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:32.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:32.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:32.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:32.870][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:32.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:32.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:32.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:32.874][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:32.874][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:32.875][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:32.879][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:32.880][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:32.881][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:32.882][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:32.883][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:32.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:32.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:32.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:32.886][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:32.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:32.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:32.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:32.890][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:32.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:32.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:32.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:32.893][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-07-26 16:02:32.895][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:32.896][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:32.897][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:32.900][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:32.901][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:32.902][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:32.903][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:32.904][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:32.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:32.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:32.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:32.907][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:32.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:32.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:32.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:32.911][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:32.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:32.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:32.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:32.915][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:32.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:32.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:32.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:32.918][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:32.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:32.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:32.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:32.922][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:32.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:32.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:32.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:32.926][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:32.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:32.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:32.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:32.929][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:32.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:32.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:32.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:32.933][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:32.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:32.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:32.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:32.936][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:32.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:32.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:32.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:32.940][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:32.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:32.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:32.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:32.944][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:32.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:32.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:32.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:32.947][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:32.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:32.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:32.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:32.951][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:32.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:32.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:32.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:32.955][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:32.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:32.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:32.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:32.958][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:32.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:32.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:32.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:32.962][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:32.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:32.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:32.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:32.966][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:32.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:32.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:32.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:32.969][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-26 16:02:32.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:32.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:32.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:32.973][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-26 16:02:32.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:32.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:32.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:32.977][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:32.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:32.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:32.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:32.980][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:32.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:32.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:32.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:32.984][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:32.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:32.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:32.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:32.987][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:32.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:32.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:32.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:32.991][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-07-26 16:02:32.992][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-07-26 16:02:32.993][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-26 16:02:32.994][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-26 16:02:32.995][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-07-26 16:02:32.996][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:32.996][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:32.997][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:32.998][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:32.999][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:33.000][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:33.001][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:33.002][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:33.003][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:33.004][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:33.005][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:33.005][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:33.006][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:33.007][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:33.008][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:33.009][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:33.010][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:33.011][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:33.012][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:33.013][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:33.014][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:33.015][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:33.015][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:33.016][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:33.017][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:33.018][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:33.019][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:33.020][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:33.021][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:33.022][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:33.023][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:33.023][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:33.024][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:33.025][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:33.026][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:33.027][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:33.028][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-26 16:02:33.029][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:33.030][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:33.031][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:33.032][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:33.033][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:33.033][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:33.034][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:33.039][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:33.040][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:33.041][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:33.042][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:33.043][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:33.044][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:33.045][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:33.046][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:33.047][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:33.048][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:33.048][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:33.049][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:33.050][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:33.051][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:33.052][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:33.053][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:33.054][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:33.055][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:33.056][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:33.056][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:33.057][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:33.058][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:33.059][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:33.060][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:33.061][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:33.062][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:33.063][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:33.063][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:33.064][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:33.065][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:33.066][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:33.067][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:33.068][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:33.069][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:33.070][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:33.071][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:33.071][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:33.072][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:33.073][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:33.074][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:33.075][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-26 16:02:33.076][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:33.077][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:33.078][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:33.078][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:33.079][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:33.080][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:33.081][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:33.082][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:33.083][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:33.084][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:33.085][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:33.086][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-07-26 16:02:33.086][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-07-26 16:02:33.087][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:33.088][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:33.089][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:33.090][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:33.091][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:33.092][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:33.093][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:33.094][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:33.094][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:33.095][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:33.096][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:33.097][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:33.098][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:33.099][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:33.100][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:33.101][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:33.102][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:33.103][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:33.103][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:33.104][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:33.105][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:33.106][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:33.107][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:33.108][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:33.109][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:33.110][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:33.110][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:33.111][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:33.112][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:33.113][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:33.114][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:33.115][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:33.116][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:33.117][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:33.118][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:33.118][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:33.119][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-26 16:02:33.120][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:33.121][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:33.122][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:33.123][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:33.124][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:33.125][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:33.125][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:33.126][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:33.127][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:33.128][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:33.129][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:33.130][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-07-26 16:02:33.131][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:33.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:33.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:33.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:33.135][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:33.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:33.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:33.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:33.138][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:33.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:33.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:33.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:33.142][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:33.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:33.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:33.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:33.145][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:33.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:33.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:33.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:33.149][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:33.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:33.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:33.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:33.153][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:33.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:33.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:33.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:33.156][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:33.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:33.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:33.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:33.160][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:33.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:33.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:33.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:33.164][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:33.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:33.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:33.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:33.167][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:33.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:33.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:33.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:33.171][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:33.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:33.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:33.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:33.175][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:33.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:33.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:33.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:33.179][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:33.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:33.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:33.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:33.182][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:33.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:33.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:33.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:33.186][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:33.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:33.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:33.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:33.190][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:33.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:33.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:33.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:33.193][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:33.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:33.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:33.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:33.197][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:33.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:33.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:33.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:33.201][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:33.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:33.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:33.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:33.204][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:33.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:33.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:33.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:33.208][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:33.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:33.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:33.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:33.212][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:33.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:33.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:33.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:33.215][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:33.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:33.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:33.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:33.219][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:33.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:33.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:33.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:33.223][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:33.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:33.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:33.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:33.226][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:33.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:33.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:33.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:33.230][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-26 16:02:33.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:33.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:33.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:33.234][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-26 16:02:33.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:33.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:33.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:33.238][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-26 16:02:33.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:33.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:33.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:33.241][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:33.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:33.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:33.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:33.245][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:33.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:33.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:33.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:33.249][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:33.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:33.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:33.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:33.252][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:33.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:33.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:33.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:33.256][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:33.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:33.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:33.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:33.260][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:33.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:33.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:33.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:33.269][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [4781, 0, 4781, C29H40N2O4, InChI=1S/C29H40N2O4/c1-6-18-17-31-10-8-20-14-27(33-3)29(35-5)16-23(20)25(31)12-21(18)11-24-22-15-28(34-4)26(32-2)13-19(22)7-9-30-24/h13-16,18,21,24-25,30H,6-12,17H2,1-5H3/t18-,21-,24+,25-/m0/s1, ...].
biodb.DEBUG[2025-07-26 16:02:33.270][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:33.271][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:33.272][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:33.276][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:33.281][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:33.282][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:33.283][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:33.284][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:33.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:33.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:33.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:33.287][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:33.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:33.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:33.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:33.291][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:33.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:33.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:33.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:33.295][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:33.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:33.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:33.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:33.298][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:33.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:33.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:33.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:33.302][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:33.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:33.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:33.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:33.305][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:33.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:33.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:33.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:33.309][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:33.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:33.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:33.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:33.312][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:33.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:33.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:33.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:33.316][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:33.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:33.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:33.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:33.320][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:33.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:33.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:33.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:33.323][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:33.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:33.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:33.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:33.327][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:33.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:33.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:33.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:33.330][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:33.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:33.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:33.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:33.334][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:33.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:33.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:33.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:33.338][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:33.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:33.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:33.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:33.341][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:33.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:33.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:33.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:33.345][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:33.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:33.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:33.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:33.349][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-26 16:02:33.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:33.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:33.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:33.352][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-26 16:02:33.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:33.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:33.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:33.356][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:33.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:33.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:33.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:33.359][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:33.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:33.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:33.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:33.363][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:33.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:33.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:33.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:33.367][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:33.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:33.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:33.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:33.370][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-07-26 16:02:33.371][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-07-26 16:02:33.372][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-26 16:02:33.373][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-26 16:02:33.374][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-07-26 16:02:33.375][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:33.376][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:33.377][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:33.377][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:33.378][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:33.379][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:33.380][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:33.381][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:33.382][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:33.383][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:33.384][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:33.385][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:33.385][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:33.386][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:33.387][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:33.388][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:33.389][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:33.390][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:33.391][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:33.392][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:33.393][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:33.394][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:33.394][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:33.395][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:33.396][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:33.397][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:33.398][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:33.399][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:33.400][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:33.401][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:33.402][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:33.402][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:33.403][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:33.404][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:33.405][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:33.406][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:33.407][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-26 16:02:33.408][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:33.409][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:33.410][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:33.410][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:33.411][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:33.412][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:33.413][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:33.414][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:33.415][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:33.416][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:33.417][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:33.418][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:33.419][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:33.419][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:33.420][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:33.421][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:33.422][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:33.423][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:33.424][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:33.425][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:33.426][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:33.427][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:33.428][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:33.428][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:33.429][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:33.430][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:33.431][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:33.432][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:33.433][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:33.434][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:33.435][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:33.436][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:33.437][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:33.438][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:33.438][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:33.439][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:33.440][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:33.441][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:33.442][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:33.443][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:33.444][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:33.445][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:33.446][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:33.447][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:33.447][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:33.448][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:33.449][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:33.450][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-26 16:02:33.451][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:33.452][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:33.453][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:33.454][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:33.455][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:33.456][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:33.456][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:33.457][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:33.458][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:33.459][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:33.460][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:33.461][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-07-26 16:02:33.462][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-07-26 16:02:33.463][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:33.464][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:33.465][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:33.465][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:33.466][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:33.467][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:33.468][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:33.469][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:33.470][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:33.471][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:33.472][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:33.473][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:33.474][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:33.474][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:33.475][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:33.476][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:33.477][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:33.478][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:33.479][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:33.480][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:33.481][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:33.482][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:33.483][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:33.483][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:33.484][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:33.485][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:33.486][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:33.487][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:33.488][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:33.489][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:33.490][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:33.491][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:33.492][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-26 16:02:33.492][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:33.493][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:33.494][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:33.495][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:33.496][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:33.497][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:33.498][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:33.499][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:33.500][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:33.501][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:33.501][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:33.502][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-07-26 16:02:33.503][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:33.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:33.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:33.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:33.507][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:33.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:33.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:33.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:33.511][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:33.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:33.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:33.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:33.514][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:33.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:33.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:33.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:33.518][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:33.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:33.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:33.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:33.526][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:33.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:33.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:33.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:33.530][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:33.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:33.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:33.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:33.533][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:33.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:33.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:33.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:33.537][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:33.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:33.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:33.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:33.540][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:33.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:33.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:33.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:33.544][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:33.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:33.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:33.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:33.548][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:33.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:33.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:33.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:33.551][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:33.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:33.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:33.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:33.555][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:33.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:33.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:33.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:33.558][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:33.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:33.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:33.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:33.562][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:33.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:33.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:33.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:33.566][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:33.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:33.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:33.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:33.569][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:33.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:33.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:33.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:33.573][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:33.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:33.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:33.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:33.577][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:33.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:33.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:33.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:33.580][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:33.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:33.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:33.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:33.584][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:33.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:33.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:33.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:33.588][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:33.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:33.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:33.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:33.591][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:33.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:33.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:33.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:33.595][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-26 16:02:33.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:33.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:33.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:33.598][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-26 16:02:33.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:33.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:33.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:33.602][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-26 16:02:33.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:33.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:33.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:33.606][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:33.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:33.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:33.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:33.609][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:33.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:33.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:33.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:33.613][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:33.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:33.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:33.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:33.617][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:33.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:33.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:33.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:33.620][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:33.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:33.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:33.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:33.624][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:33.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:33.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:33.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:33.632][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [91601, 0, 91601, C29H40N2O4, InChI=1S/C29H40N2O4/c1-6-18-17-31-10-8-20-14-27(33-3)29(35-5)16-23(20)25(31)12-21(18)11-24-22-15-28(34-4)26(32-2)13-19(22)7-9-30-24/h13-16,18,21,24-25,30H,6-12,17H2,1-5H3/t18-,21-,24?,25?/m0/s1, ...].
biodb.DEBUG[2025-07-26 16:02:33.633][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:33.634][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:33.635][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:33.639][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:33.640][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:33.641][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:33.642][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:33.643][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:33.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:33.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:33.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:33.646][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:33.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:33.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:33.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:33.650][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:33.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:33.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:33.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:33.653][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:33.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:33.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:33.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:33.657][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:33.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:33.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:33.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:33.661][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:33.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:33.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:33.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:33.664][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:33.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:33.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:33.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:33.668][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:33.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:33.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:33.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:33.672][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:33.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:33.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:33.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:33.675][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:33.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:33.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:33.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:33.679][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:33.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:33.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:33.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:33.683][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:33.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:33.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:33.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:33.686][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:33.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:33.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:33.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:33.690][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:33.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:33.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:33.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:33.694][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:33.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:33.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:33.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:33.697][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:33.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:33.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:33.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:33.701][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:33.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:33.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:33.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:33.704][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:33.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:33.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:33.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:33.708][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-26 16:02:33.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:33.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:33.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:33.712][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-26 16:02:33.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:33.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:33.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:33.715][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:33.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:33.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:33.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:33.719][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:33.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:33.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:33.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:33.723][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:33.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:33.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:33.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:33.726][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:33.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:33.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:33.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:33.730][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-07-26 16:02:33.731][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-07-26 16:02:33.732][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-26 16:02:33.732][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-26 16:02:33.733][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-07-26 16:02:33.734][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:33.735][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:33.736][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:33.737][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:33.738][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:33.739][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:33.740][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:33.741][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:33.741][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:33.742][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:33.743][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:33.744][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:33.745][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:33.746][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:33.747][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:33.748][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:33.749][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:33.750][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:33.751][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:33.752][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:33.752][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:33.753][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:33.754][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:33.755][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:33.756][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:33.757][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:33.758][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:33.759][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:33.760][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:33.764][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:33.766][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:33.766][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:33.767][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:33.768][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:33.769][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:33.770][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:33.771][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-26 16:02:33.772][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:33.773][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:33.774][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:33.774][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:33.775][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:33.776][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:33.777][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:33.778][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:33.779][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:33.780][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:33.781][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:33.782][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:33.783][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:33.783][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:33.784][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:33.785][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:33.786][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:33.787][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:33.788][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:33.789][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:33.790][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:33.791][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:33.791][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:33.792][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:33.793][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:33.794][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:33.795][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:33.796][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:33.797][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:33.798][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:33.799][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:33.799][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:33.800][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:33.801][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:33.802][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:33.803][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:33.804][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:33.805][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:33.806][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:33.806][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:33.807][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:33.808][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:33.809][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:33.810][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:33.811][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:33.812][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:33.813][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:33.814][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-26 16:02:33.815][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:33.815][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:33.816][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:33.817][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:33.818][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:33.819][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:33.820][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:33.821][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:33.822][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:33.823][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:33.823][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:33.824][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-07-26 16:02:33.825][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-07-26 16:02:33.826][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:33.827][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:33.828][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:33.829][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:33.830][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:33.831][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:33.832][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:33.832][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:33.833][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:33.834][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:33.835][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:33.836][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:33.837][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:33.838][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:33.839][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:33.839][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:33.840][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:33.841][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:33.842][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:33.843][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:33.844][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:33.845][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:33.846][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:33.846][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:33.847][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:33.848][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:33.849][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:33.850][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:33.851][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:33.852][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:33.853][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:33.854][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:33.854][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-26 16:02:33.855][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:33.856][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:33.857][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:33.858][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:33.859][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:33.860][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:33.861][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:33.862][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:33.863][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:33.863][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:33.864][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:33.865][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-07-26 16:02:33.866][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:33.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:33.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:33.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:33.870][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:33.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:33.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:33.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:33.873][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:33.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:33.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:33.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:33.877][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:33.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:33.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:33.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:33.881][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:33.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:33.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:33.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:33.884][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:33.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:33.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:33.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:33.888][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:33.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:33.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:33.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:33.892][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:33.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:33.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:33.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:33.895][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:33.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:33.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:33.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:33.899][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:33.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:33.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:33.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:33.903][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:33.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:33.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:33.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:33.906][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:33.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:33.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:33.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:33.910][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:33.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:33.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:33.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:33.914][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:33.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:33.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:33.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:33.917][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:33.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:33.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:33.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:33.921][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:33.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:33.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:33.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:33.925][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:33.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:33.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:33.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:33.928][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:33.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:33.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:33.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:33.932][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:33.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:33.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:33.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:33.936][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:33.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:33.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:33.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:33.940][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:33.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:33.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:33.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:33.943][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:33.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:33.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:33.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:33.947][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:33.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:33.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:33.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:33.951][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:33.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:33.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:33.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:33.954][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-26 16:02:33.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:33.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:33.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:33.958][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-26 16:02:33.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:33.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:33.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:33.962][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-26 16:02:33.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:33.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:33.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:33.965][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:33.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:33.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:33.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:33.969][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:33.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:33.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:33.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:33.973][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:33.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:33.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:33.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:33.976][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:33.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:33.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:33.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:33.980][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:33.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:33.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:33.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:33.984][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:33.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:33.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:33.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:33.993][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [95147, 0, 95147, C29H40N2O4, InChI=1S/C29H40N2O4/c1-3-18-16(2)14-22-20(18)10-11-21-19-6-4-8-26(33)30-13-5-7-24-28(34)27(29(35)31-24)25(32)12-9-17(19)15-23(21)22/h4,8,10-11,16-24,27H,3,5-7,9,12-15H2,1-2H3,(H,30,33)(H,31,35)/t16-,17-,18-,19+,20+,21-,22+,23+,24+,27?/m1/s1, ...].
biodb.DEBUG[2025-07-26 16:02:33.994][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-07-26 16:02:33.994][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-07-26 16:02:33.997][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:33.998][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:33.999][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:34.007][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:34.008][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:34.009][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:34.010][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-07-26 16:02:34.012][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.17*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-07-26 16:02:34.014][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-07-26 16:02:34.018][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/039d0a183be9e894c19f49abb7cadca8.content.
sched.DEBUG[2025-07-26 16:02:34.019][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-07-26 16:02:34.021][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:34.022][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:34.023][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:34.027][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:34.028][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:34.029][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:34.029][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:34.030][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:34.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:34.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:34.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:34.034][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:34.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:34.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:34.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:34.038][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:34.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:34.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:34.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:34.041][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:34.042][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:34.043][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:34.047][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:34.048][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:34.049][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:34.049][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:34.050][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:34.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:34.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:34.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:34.054][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:34.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:34.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:34.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:34.058][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:34.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:34.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:34.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:34.061][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:34.062][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:34.063][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:34.067][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:34.068][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:34.069][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:34.069][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:34.070][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:34.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:34.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:34.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:34.074][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:34.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:34.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:34.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:34.078][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:34.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:34.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:34.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:34.081][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-07-26 16:02:34.083][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:34.084][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:34.084][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:34.088][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:34.089][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:34.090][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:34.091][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:34.092][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:34.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:34.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:34.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:34.095][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:34.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:34.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:34.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:34.099][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:34.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:34.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:34.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:34.103][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:34.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:34.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:34.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:34.106][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:34.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:34.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:34.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:34.110][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:34.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:34.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:34.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:34.113][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:34.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:34.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:34.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:34.117][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:34.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:34.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:34.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:34.121][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:34.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:34.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:34.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:34.124][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:34.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:34.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:34.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:34.128][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:34.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:34.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:34.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:34.132][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:34.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:34.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:34.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:34.135][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:34.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:34.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:34.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:34.139][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:34.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:34.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:34.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:34.142][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:34.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:34.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:34.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:34.146][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:34.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:34.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:34.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:34.150][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:34.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:34.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:34.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:34.153][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:34.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:34.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:34.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:34.157][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-26 16:02:34.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:34.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:34.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:34.161][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-26 16:02:34.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:34.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:34.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:34.164][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:34.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:34.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:34.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:34.168][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:34.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:34.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:34.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:34.172][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:34.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:34.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:34.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:34.175][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:34.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:34.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:34.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:34.179][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-07-26 16:02:34.180][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-07-26 16:02:34.181][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-26 16:02:34.182][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-26 16:02:34.182][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-07-26 16:02:34.183][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:34.184][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:34.185][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:34.186][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:34.187][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:34.188][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:34.189][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:34.190][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:34.191][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:34.192][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:34.192][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:34.193][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:34.194][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:34.195][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:34.196][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:34.197][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:34.198][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:34.199][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:34.200][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:34.200][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:34.201][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:34.202][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:34.203][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:34.204][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:34.205][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:34.206][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:34.207][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:34.208][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:34.209][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:34.210][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:34.210][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:34.211][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:34.212][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:34.213][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:34.214][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:34.215][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:34.216][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-26 16:02:34.217][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:34.218][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:34.218][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:34.219][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:34.220][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:34.221][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:34.222][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:34.223][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:34.224][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:34.225][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:34.226][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:34.227][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:34.228][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:34.228][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:34.229][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:34.230][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:34.231][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:34.232][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:34.233][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:34.234][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:34.235][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:34.236][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:34.237][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:34.237][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:34.238][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:34.239][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:34.240][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:34.241][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:34.242][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:34.243][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:34.244][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:34.245][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:34.246][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:34.251][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:34.252][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:34.253][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:34.254][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:34.255][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:34.255][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:34.256][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:34.257][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:34.258][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:34.259][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:34.260][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:34.261][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:34.262][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:34.262][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:34.263][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-26 16:02:34.264][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:34.265][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:34.266][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:34.267][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:34.268][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:34.269][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:34.270][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:34.270][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:34.271][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:34.272][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:34.273][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:34.274][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-07-26 16:02:34.275][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-07-26 16:02:34.276][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:34.277][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:34.278][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:34.278][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:34.279][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:34.280][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:34.281][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:34.282][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:34.283][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:34.284][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:34.285][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:34.286][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:34.286][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:34.287][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:34.288][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:34.289][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:34.290][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:34.291][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:34.292][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:34.293][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:34.294][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:34.295][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:34.295][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:34.296][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:34.297][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:34.298][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:34.299][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:34.300][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:34.301][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:34.302][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:34.302][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:34.303][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:34.304][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:34.305][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:34.306][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:34.307][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:34.308][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-26 16:02:34.309][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:34.310][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:34.311][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:34.311][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:34.312][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:34.313][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:34.314][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:34.315][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:34.316][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:34.317][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:34.318][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:34.319][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-07-26 16:02:34.320][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:34.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:34.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:34.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:34.323][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:34.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:34.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:34.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:34.327][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:34.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:34.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:34.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:34.330][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:34.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:34.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:34.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:34.334][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:34.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:34.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:34.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:34.338][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:34.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:34.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:34.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:34.341][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:34.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:34.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:34.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:34.345][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:34.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:34.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:34.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:34.349][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:34.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:34.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:34.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:34.352][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:34.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:34.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:34.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:34.356][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:34.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:34.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:34.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:34.360][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:34.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:34.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:34.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:34.363][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:34.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:34.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:34.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:34.367][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:34.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:34.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:34.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:34.371][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:34.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:34.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:34.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:34.374][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:34.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:34.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:34.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:34.378][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:34.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:34.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:34.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:34.382][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:34.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:34.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:34.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:34.385][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:34.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:34.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:34.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:34.389][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:34.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:34.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:34.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:34.393][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:34.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:34.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:34.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:34.397][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:34.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:34.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:34.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:34.400][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:34.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:34.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:34.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:34.404][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:34.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:34.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:34.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:34.408][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:34.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:34.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:34.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:34.411][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:34.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:34.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:34.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:34.415][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:34.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:34.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:34.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:34.419][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-26 16:02:34.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:34.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:34.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:34.423][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-26 16:02:34.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:34.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:34.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:34.426][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-26 16:02:34.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:34.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:34.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:34.430][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:34.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:34.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:34.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:34.434][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:34.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:34.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:34.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:34.437][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:34.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:34.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:34.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:34.441][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:34.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:34.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:34.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:34.445][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:34.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:34.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:34.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:34.448][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:34.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:34.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:34.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:34.457][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [636, 0, 636, C24H26O6, InChI=1S/C24H26O6/c1-12(2)6-7-14-19-17(11-16(26)22(14)28-5)29-18-10-15(25)13-8-9-24(3,4)30-23(13)20(18)21(19)27/h6,10-11,25-26H,7-9H2,1-5H3, ...].
biodb.DEBUG[2025-07-26 16:02:34.458][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:34.459][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:34.460][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:34.464][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:34.465][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:34.466][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:34.467][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:34.468][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:34.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:34.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:34.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:34.472][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:34.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:34.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:34.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:34.475][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:34.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:34.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:34.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:34.479][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:34.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:34.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:34.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:34.482][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:34.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:34.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:34.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:34.486][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:34.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:34.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:34.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:34.503][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:34.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:34.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:34.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:34.507][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:34.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:34.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:34.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:34.510][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:34.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:34.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:34.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:34.514][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:34.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:34.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:34.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:34.517][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:34.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:34.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:34.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:34.521][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:34.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:34.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:34.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:34.525][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:34.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:34.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:34.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:34.528][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:34.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:34.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:34.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:34.532][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:34.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:34.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:34.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:34.535][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:34.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:34.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:34.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:34.539][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:34.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:34.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:34.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:34.543][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:34.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:34.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:34.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:34.546][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-26 16:02:34.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:34.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:34.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:34.550][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-26 16:02:34.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:34.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:34.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:34.553][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:34.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:34.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:34.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:34.557][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:34.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:34.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:34.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:34.561][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:34.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:34.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:34.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:34.564][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:34.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:34.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:34.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:34.568][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-07-26 16:02:34.569][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-07-26 16:02:34.570][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-26 16:02:34.570][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-26 16:02:34.571][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-07-26 16:02:34.572][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:34.573][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:34.574][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:34.575][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:34.576][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:34.577][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:34.578][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:34.579][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:34.579][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:34.580][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:34.581][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:34.582][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:34.583][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:34.584][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:34.585][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:34.586][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:34.587][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:34.588][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:34.588][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:34.589][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:34.590][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:34.591][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:34.592][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:34.593][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:34.594][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:34.595][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:34.596][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:34.596][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:34.597][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:34.598][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:34.599][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:34.600][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:34.601][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:34.602][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:34.603][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:34.604][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:34.604][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-26 16:02:34.605][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:34.606][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:34.607][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:34.608][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:34.609][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:34.610][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:34.611][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:34.612][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:34.613][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:34.613][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:34.614][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:34.615][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:34.616][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:34.617][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:34.618][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:34.619][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:34.620][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:34.621][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:34.622][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:34.622][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:34.623][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:34.624][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:34.625][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:34.626][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:34.627][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:34.628][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:34.629][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:34.630][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:34.631][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:34.631][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:34.632][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:34.633][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:34.634][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:34.635][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:34.636][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:34.637][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:34.638][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:34.639][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:34.640][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:34.640][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:34.641][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:34.642][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:34.643][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:34.644][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:34.645][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:34.646][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:34.647][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:34.648][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-26 16:02:34.649][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:34.650][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:34.651][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:34.651][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:34.652][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:34.653][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:34.654][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:34.655][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:34.656][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:34.657][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:34.658][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:34.659][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-07-26 16:02:34.660][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-07-26 16:02:34.661][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:34.662][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:34.663][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:34.663][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:34.664][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:34.665][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:34.666][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:34.667][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:34.668][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:34.669][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:34.670][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:34.671][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:34.672][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:34.673][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:34.674][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:34.674][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:34.675][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:34.676][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:34.677][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:34.678][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:34.679][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:34.680][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:34.681][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:34.682][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:34.683][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:34.684][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:34.685][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:34.685][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:34.686][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:34.687][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:34.688][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:34.689][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:34.690][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-26 16:02:34.691][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:34.692][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:34.693][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:34.694][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:34.695][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:34.696][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:34.696][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:34.697][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:34.698][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:34.699][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:34.700][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:34.701][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-07-26 16:02:34.702][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:34.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:34.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:34.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:34.706][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:34.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:34.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:34.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:34.709][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:34.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:34.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:34.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:34.713][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:34.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:34.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:34.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:34.717][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:34.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:34.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:34.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:34.721][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:34.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:34.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:34.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:34.724][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:34.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:34.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:34.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:34.728][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:34.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:34.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:34.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:34.732][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:34.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:34.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:34.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:34.736][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:34.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:34.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:34.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:34.739][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:34.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:34.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:34.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:34.747][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:34.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:34.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:34.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:34.751][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:34.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:34.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:34.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:34.755][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:34.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:34.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:34.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:34.758][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:34.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:34.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:34.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:34.762][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:34.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:34.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:34.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:34.765][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:34.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:34.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:34.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:34.769][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:34.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:34.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:34.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:34.773][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:34.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:34.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:34.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:34.776][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:34.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:34.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:34.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:34.780][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:34.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:34.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:34.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:34.784][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:34.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:34.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:34.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:34.787][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:34.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:34.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:34.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:34.791][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:34.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:34.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:34.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:34.794][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-26 16:02:34.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:34.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:34.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:34.798][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-26 16:02:34.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:34.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:34.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:34.802][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-26 16:02:34.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:34.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:34.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:34.805][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:34.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:34.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:34.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:34.809][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:34.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:34.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:34.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:34.813][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:34.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:34.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:34.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:34.816][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:34.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:34.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:34.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:34.820][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:34.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:34.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:34.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:34.824][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:34.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:34.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:34.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:34.832][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [64199, 0, 64199, C24H27ClN2O2, InChI=1S/C24H26N2O2.ClH/c27-24(28)20-9-10-23-22(16-20)21(17-25-23)8-4-5-13-26-14-11-19(12-15-26)18-6-2-1-3-7-18;/h1-3,6-7,9-11,16-17,25H,4-5,8,12-15H2,(H,27,28);1H, ...].
biodb.DEBUG[2025-07-26 16:02:34.833][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:34.834][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:34.835][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:34.839][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:34.840][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:34.841][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:34.841][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:34.842][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:34.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:34.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:34.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:34.846][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:34.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:34.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:34.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:34.850][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:34.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:34.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:34.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:34.853][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:34.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:34.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:34.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:34.857][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:34.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:34.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:34.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:34.861][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:34.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:34.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:34.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:34.864][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:34.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:34.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:34.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:34.868][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:34.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:34.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:34.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:34.871][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:34.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:34.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:34.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:34.875][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:34.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:34.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:34.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:34.879][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:34.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:34.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:34.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:34.882][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:34.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:34.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:34.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:34.886][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:34.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:34.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:34.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:34.890][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:34.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:34.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:34.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:34.893][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:34.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:34.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:34.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:34.897][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:34.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:34.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:34.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:34.900][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:34.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:34.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:34.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:34.904][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:34.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:34.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:34.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:34.908][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-26 16:02:34.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:34.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:34.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:34.911][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-26 16:02:34.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:34.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:34.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:34.915][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:34.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:34.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:34.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:34.919][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:34.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:34.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:34.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:34.922][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:34.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:34.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:34.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:34.926][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:34.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:34.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:34.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:34.930][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-07-26 16:02:34.930][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-07-26 16:02:34.931][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-26 16:02:34.932][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-26 16:02:34.933][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-07-26 16:02:34.934][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:34.935][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:34.936][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:34.937][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:34.938][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:34.939][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:34.939][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:34.940][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:34.941][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:34.942][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:34.943][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:34.944][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:34.945][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:34.946][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:34.947][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:34.948][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:34.948][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:34.949][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:34.950][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:34.951][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:34.952][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:34.953][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:34.954][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:34.955][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:34.956][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:34.957][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:34.957][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:34.958][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:34.959][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:34.960][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:34.961][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:34.962][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:34.963][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:34.964][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:34.965][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:34.966][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:34.966][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-26 16:02:34.967][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:34.968][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:34.969][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:34.970][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:34.971][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:34.972][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:34.973][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:34.974][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:34.975][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:34.976][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:34.976][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:34.977][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:34.978][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:34.979][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:34.980][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:34.981][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:34.982][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:34.983][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:34.984][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:34.985][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:34.989][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:34.990][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:34.991][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:34.992][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:34.993][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:34.994][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:34.995][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:34.996][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:34.997][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:34.998][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:34.998][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:34.999][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:35.000][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:35.001][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:35.002][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:35.003][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:35.004][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:35.005][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:35.005][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:35.006][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:35.007][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:35.008][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:35.009][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:35.010][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:35.011][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:35.012][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:35.013][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:35.013][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-26 16:02:35.014][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:35.015][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:35.016][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:35.017][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:35.018][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:35.019][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:35.020][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:35.021][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:35.021][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:35.022][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:35.023][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:35.024][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-07-26 16:02:35.025][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-07-26 16:02:35.026][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:35.027][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:35.028][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:35.029][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:35.029][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:35.030][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:35.031][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:35.032][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:35.033][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:35.034][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:35.035][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:35.036][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:35.036][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:35.037][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:35.038][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:35.039][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:35.040][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:35.041][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:35.042][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:35.043][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:35.044][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:35.045][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:35.045][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:35.046][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:35.047][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:35.048][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:35.049][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:35.050][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:35.051][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:35.052][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:35.052][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:35.053][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:35.054][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-26 16:02:35.055][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:35.056][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:35.057][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:35.058][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:35.059][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:35.060][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:35.060][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:35.061][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:35.062][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:35.063][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:35.064][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:35.065][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-07-26 16:02:35.066][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:35.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:35.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:35.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:35.069][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:35.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:35.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:35.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:35.073][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:35.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:35.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:35.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:35.077][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:35.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:35.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:35.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:35.080][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:35.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:35.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:35.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:35.084][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:35.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:35.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:35.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:35.088][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:35.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:35.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:35.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:35.091][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:35.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:35.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:35.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:35.095][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:35.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:35.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:35.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:35.099][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:35.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:35.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:35.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:35.102][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:35.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:35.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:35.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:35.106][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:35.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:35.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:35.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:35.110][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:35.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:35.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:35.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:35.113][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:35.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:35.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:35.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:35.117][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:35.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:35.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:35.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:35.120][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:35.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:35.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:35.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:35.124][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:35.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:35.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:35.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:35.128][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:35.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:35.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:35.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:35.132][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:35.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:35.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:35.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:35.135][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:35.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:35.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:35.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:35.139][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:35.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:35.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:35.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:35.143][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:35.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:35.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:35.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:35.146][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:35.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:35.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:35.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:35.150][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:35.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:35.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:35.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:35.154][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-26 16:02:35.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:35.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:35.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:35.157][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-26 16:02:35.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:35.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:35.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:35.161][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-26 16:02:35.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:35.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:35.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:35.165][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:35.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:35.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:35.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:35.168][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:35.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:35.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:35.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:35.172][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:35.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:35.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:35.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:35.176][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:35.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:35.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:35.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:35.179][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:35.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:35.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:35.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:35.183][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:35.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:35.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:35.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:35.192][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [65648, 0, 65648, C24H26O6, InChI=1S/C24H26O6/c1-13(2)9-10-23-20(27)22(28-5)11-14-19(26)18-15(25)7-6-8-16(18)29-24(14,23)17(12-22)21(3,4)30-23/h6-9,11,17,25H,10,12H2,1-5H3/t17-,22-,23-,24+/m0/s1, ...].
biodb.DEBUG[2025-07-26 16:02:35.193][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-07-26 16:02:35.194][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-07-26 16:02:35.201][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:35.202][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:35.203][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:35.207][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:35.207][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:35.208][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:35.209][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-07-26 16:02:35.211][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-07-26 16:02:35.214][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-07-26 16:02:35.215][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/2e865a03592d6effdf242ff63104f35a.content.
sched.DEBUG[2025-07-26 16:02:35.216][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
sched.DEBUG[2025-07-26 16:02:35.219][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-07-26 16:02:35.221][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-07-26 16:02:35.223][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/f0c73645ca32490f91d503a462d812b2.content.
sched.DEBUG[2025-07-26 16:02:35.224][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-07-26 16:02:35.227][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:35.227][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:35.228][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:35.236][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:35.237][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:35.238][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:35.239][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:35.240][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:35.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:35.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:35.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:35.243][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:35.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:35.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:35.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:35.247][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:35.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:35.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:35.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:35.251][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:35.252][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:35.252][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:35.256][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:35.257][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:35.258][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:35.259][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:35.260][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:35.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:35.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:35.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:35.263][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:35.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:35.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:35.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:35.267][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:35.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:35.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:35.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:35.270][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:35.271][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:35.272][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:35.276][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:35.277][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:35.277][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:35.278][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:35.279][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:35.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:35.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:35.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:35.283][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:35.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:35.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:35.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:35.287][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:35.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:35.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:35.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:35.290][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-07-26 16:02:35.292][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:35.293][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:35.293][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:35.297][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:35.298][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:35.299][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:35.300][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:35.301][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:35.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:35.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:35.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:35.304][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:35.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:35.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:35.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:35.308][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:35.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:35.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:35.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:35.312][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:35.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:35.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:35.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:35.315][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:35.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:35.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:35.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:35.319][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:35.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:35.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:35.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:35.322][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:35.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:35.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:35.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:35.326][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:35.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:35.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:35.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:35.330][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:35.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:35.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:35.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:35.333][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:35.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:35.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:35.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:35.337][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:35.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:35.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:35.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:35.341][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:35.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:35.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:35.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:35.344][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:35.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:35.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:35.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:35.348][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:35.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:35.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:35.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:35.351][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:35.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:35.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:35.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:35.355][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:35.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:35.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:35.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:35.359][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:35.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:35.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:35.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:35.362][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:35.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:35.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:35.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:35.366][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-26 16:02:35.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:35.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:35.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:35.370][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-26 16:02:35.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:35.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:35.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:35.373][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:35.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:35.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:35.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:35.377][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:35.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:35.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:35.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:35.381][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:35.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:35.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:35.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:35.384][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:35.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:35.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:35.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:35.388][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-07-26 16:02:35.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-07-26 16:02:35.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:35.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:35.392][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-07-26 16:02:35.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-07-26 16:02:35.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:35.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:35.395][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-07-26 16:02:35.396][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-07-26 16:02:35.397][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-26 16:02:35.398][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-26 16:02:35.399][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-07-26 16:02:35.400][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:35.401][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:35.401][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:35.402][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:35.403][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:35.404][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:35.405][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:35.406][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:35.407][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:35.408][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:35.409][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:35.409][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:35.410][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:35.411][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:35.412][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:35.413][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:35.414][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:35.415][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:35.416][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:35.417][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:35.418][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:35.418][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:35.419][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:35.420][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:35.421][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:35.422][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:35.423][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:35.424][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:35.425][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:35.426][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:35.427][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:35.427][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:35.428][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:35.429][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:35.430][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:35.431][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:35.432][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-26 16:02:35.433][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:35.434][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:35.435][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:35.436][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:35.436][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:35.437][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:35.438][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:35.439][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:35.440][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:35.441][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:35.442][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:35.443][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-07-26 16:02:35.444][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-07-26 16:02:35.445][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:35.445][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:35.446][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:35.447][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:35.448][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:35.449][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:35.450][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:35.451][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:35.452][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:35.453][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:35.454][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:35.454][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:35.455][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:35.456][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:35.457][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:35.458][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:35.459][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:35.460][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:35.461][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:35.462][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:35.463][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:35.463][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:35.464][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:35.465][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:35.466][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:35.467][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:35.468][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:35.469][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:35.470][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:35.471][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:35.475][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:35.477][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:35.477][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:35.478][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:35.479][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:35.480][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:35.481][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:35.482][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:35.483][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-26 16:02:35.484][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:35.485][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:35.485][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:35.486][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:35.487][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:35.488][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:35.489][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:35.490][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:35.491][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:35.492][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:35.493][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:35.493][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-07-26 16:02:35.494][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-07-26 16:02:35.495][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:35.496][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:35.497][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-07-26 16:02:35.498][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-07-26 16:02:35.499][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:35.500][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:35.501][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:35.501][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:35.502][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:35.503][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:35.504][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:35.505][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:35.506][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:35.507][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:35.508][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:35.509][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:35.509][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:35.510][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:35.511][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:35.512][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:35.513][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:35.514][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:35.515][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:35.516][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:35.516][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:35.517][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:35.518][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:35.519][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:35.520][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:35.521][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:35.522][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:35.523][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:35.524][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:35.525][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:35.525][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:35.526][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:35.527][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:35.528][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:35.529][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:35.530][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:35.531][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-26 16:02:35.532][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:35.533][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:35.533][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:35.534][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:35.535][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:35.536][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:35.537][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:35.538][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:35.539][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:35.540][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:35.540][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:35.541][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-07-26 16:02:35.542][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:35.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:35.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:35.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:35.546][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:35.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:35.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:35.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:35.550][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:35.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:35.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:35.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:35.553][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:35.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:35.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:35.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:35.557][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:35.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:35.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:35.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:35.560][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:35.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:35.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:35.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:35.564][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:35.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:35.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:35.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:35.568][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:35.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:35.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:35.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:35.571][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:35.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:35.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:35.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:35.575][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:35.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:35.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:35.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:35.579][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:35.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:35.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:35.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:35.582][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:35.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:35.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:35.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:35.586][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:35.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:35.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:35.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:35.590][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:35.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:35.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:35.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:35.593][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:35.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:35.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:35.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:35.597][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:35.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:35.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:35.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:35.601][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:35.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:35.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:35.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:35.604][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:35.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:35.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:35.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:35.608][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:35.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:35.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:35.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:35.611][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:35.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:35.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:35.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:35.615][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:35.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:35.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:35.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:35.619][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:35.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:35.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:35.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:35.623][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:35.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:35.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:35.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:35.626][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:35.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:35.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:35.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:35.630][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:35.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:35.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:35.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:35.634][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:35.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:35.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:35.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:35.637][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:35.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:35.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:35.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:35.641][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-26 16:02:35.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:35.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:35.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:35.645][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-26 16:02:35.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:35.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:35.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:35.648][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-26 16:02:35.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:35.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:35.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:35.652][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:35.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:35.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:35.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:35.656][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:35.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:35.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:35.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:35.659][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:35.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:35.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:35.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:35.663][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:35.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:35.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:35.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:35.667][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:35.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:35.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:35.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:35.670][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:35.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:35.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:35.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:35.680][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [4648, 0, 4648, C30H50, InChI=1S/C30H50/c1-20(2)21-12-17-27(5)22(21)13-18-29(7)24(27)10-11-25-28(6)16-9-15-26(3,4)23(28)14-19-30(25,29)8/h21-25H,1,9-19H2,2-8H3/t21-,22+,23+,24-,25-,27+,28+,29-,30-/m1/s1, ...].
biodb.DEBUG[2025-07-26 16:02:35.681][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:35.682][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:35.682][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:35.686][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:35.687][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:35.688][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:35.689][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:35.690][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:35.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:35.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:35.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:35.694][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:35.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:35.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:35.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:35.697][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:35.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:35.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:35.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:35.701][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:35.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:35.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:35.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:35.705][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:35.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:35.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:35.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:35.708][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:35.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:35.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:35.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:35.712][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:35.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:35.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:35.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:35.720][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:35.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:35.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:35.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:35.724][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:35.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:35.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:35.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:35.728][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:35.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:35.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:35.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:35.731][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:35.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:35.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:35.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:35.735][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:35.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:35.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:35.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:35.739][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:35.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:35.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:35.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:35.743][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:35.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:35.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:35.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:35.746][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:35.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:35.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:35.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:35.750][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:35.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:35.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:35.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:35.753][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:35.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:35.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:35.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:35.757][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:35.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:35.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:35.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:35.761][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-26 16:02:35.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:35.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:35.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:35.764][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-26 16:02:35.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:35.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:35.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:35.768][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:35.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:35.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:35.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:35.771][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:35.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:35.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:35.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:35.775][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:35.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:35.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:35.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:35.779][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:35.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:35.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:35.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:35.782][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-07-26 16:02:35.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-07-26 16:02:35.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:35.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:35.786][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-07-26 16:02:35.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-07-26 16:02:35.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:35.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:35.789][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-07-26 16:02:35.790][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-07-26 16:02:35.791][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-26 16:02:35.792][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-26 16:02:35.793][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-07-26 16:02:35.794][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:35.795][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:35.796][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:35.796][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:35.797][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:35.798][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:35.799][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:35.800][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:35.801][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:35.802][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:35.803][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:35.803][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:35.804][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:35.805][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:35.806][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:35.807][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:35.808][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:35.809][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:35.810][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:35.811][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:35.811][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:35.812][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:35.813][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:35.814][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:35.815][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:35.816][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:35.817][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:35.818][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:35.819][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:35.819][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:35.820][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:35.821][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:35.822][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:35.823][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:35.824][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:35.825][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:35.826][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-26 16:02:35.827][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:35.827][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:35.828][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:35.829][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:35.830][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:35.831][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:35.832][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:35.833][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:35.834][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:35.835][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:35.835][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:35.836][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-07-26 16:02:35.837][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-07-26 16:02:35.838][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:35.839][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:35.840][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:35.841][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:35.842][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:35.843][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:35.843][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:35.844][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:35.845][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:35.846][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:35.847][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:35.848][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:35.849][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:35.850][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:35.851][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:35.852][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:35.852][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:35.853][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:35.854][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:35.855][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:35.856][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:35.857][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:35.858][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:35.859][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:35.860][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:35.861][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:35.861][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:35.862][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:35.863][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:35.864][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:35.865][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:35.866][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:35.867][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:35.868][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:35.869][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:35.870][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:35.870][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:35.871][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:35.872][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-26 16:02:35.873][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:35.874][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:35.875][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:35.876][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:35.877][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:35.878][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:35.879][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:35.879][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:35.880][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:35.881][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:35.882][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:35.883][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-07-26 16:02:35.884][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-07-26 16:02:35.885][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:35.886][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:35.887][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-07-26 16:02:35.888][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-07-26 16:02:35.888][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:35.889][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:35.890][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:35.891][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:35.892][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:35.893][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:35.894][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:35.895][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:35.896][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:35.897][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:35.898][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:35.898][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:35.899][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:35.900][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:35.901][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:35.902][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:35.903][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:35.904][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:35.905][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:35.906][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:35.907][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:35.908][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:35.908][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:35.909][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:35.910][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:35.911][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:35.912][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:35.913][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:35.914][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:35.915][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:35.916][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:35.916][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:35.917][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:35.918][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:35.919][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:35.920][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:35.921][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-26 16:02:35.922][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:35.923][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:35.924][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:35.925][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:35.926][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:35.926][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:35.927][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:35.928][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:35.929][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:35.930][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:35.931][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:35.932][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-07-26 16:02:35.933][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:35.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:35.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:35.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:35.937][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:35.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:35.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:35.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:35.940][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:35.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:35.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:35.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:35.944][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:35.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:35.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:35.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:35.948][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:35.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:35.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:35.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:35.952][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:35.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:35.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:35.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:35.955][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:35.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:35.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:35.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:35.963][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:35.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:35.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:35.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:35.967][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:35.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:35.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:35.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:35.970][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:35.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:35.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:35.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:35.974][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:35.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:35.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:35.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:35.978][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:35.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:35.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:35.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:35.981][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:35.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:35.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:35.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:35.985][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:35.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:35.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:35.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:35.989][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:35.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:35.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:35.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:35.992][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:35.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:35.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:35.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:35.996][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:35.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:35.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:35.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:36.000][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:36.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:36.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:36.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:36.003][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:36.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:36.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:36.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:36.007][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:36.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:36.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:36.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:36.010][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:36.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:36.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:36.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:36.014][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:36.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:36.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:36.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:36.018][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:36.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:36.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:36.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:36.021][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:36.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:36.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:36.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:36.025][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:36.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:36.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:36.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:36.029][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:36.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:36.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:36.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:36.032][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:36.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:36.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:36.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:36.036][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-26 16:02:36.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:36.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:36.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:36.040][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-26 16:02:36.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:36.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:36.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:36.043][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-26 16:02:36.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:36.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:36.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:36.047][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:36.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:36.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:36.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:36.051][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:36.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:36.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:36.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:36.055][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:36.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:36.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:36.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:36.058][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:36.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:36.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:36.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:36.062][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:36.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:36.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:36.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:36.066][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:36.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:36.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:36.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:36.075][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [15440, 0, 15440, C30H50, InChI=1S/C30H50/c1-25(2)15-11-19-29(7)23-13-21-27(5)17-9-10-18-28(6)22-14-24-30(8)20-12-16-26(3)4/h15-18,23-24H,9-14,19-22H2,1-8H3/b27-17+,28-18+,29-23+,30-24+, ...].
biodb.DEBUG[2025-07-26 16:02:36.076][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:36.077][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:36.077][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:36.082][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:36.082][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:36.083][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:36.084][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:36.085][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:36.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:36.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:36.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:36.089][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:36.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:36.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:36.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:36.093][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:36.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:36.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:36.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:36.096][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:36.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:36.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:36.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:36.100][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:36.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:36.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:36.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:36.104][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:36.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:36.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:36.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:36.107][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:36.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:36.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:36.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:36.111][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:36.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:36.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:36.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:36.114][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:36.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:36.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:36.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:36.118][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:36.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:36.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:36.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:36.122][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:36.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:36.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:36.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:36.125][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:36.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:36.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:36.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:36.129][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:36.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:36.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:36.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:36.133][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:36.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:36.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:36.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:36.136][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:36.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:36.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:36.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:36.140][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:36.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:36.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:36.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:36.144][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:36.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:36.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:36.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:36.147][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:36.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:36.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:36.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:36.151][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-26 16:02:36.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:36.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:36.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:36.155][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-26 16:02:36.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:36.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:36.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:36.158][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:36.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:36.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:36.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:36.162][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:36.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:36.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:36.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:36.166][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:36.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:36.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:36.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:36.169][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:36.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:36.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:36.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:36.173][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-07-26 16:02:36.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-07-26 16:02:36.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:36.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:36.177][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-07-26 16:02:36.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-07-26 16:02:36.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:36.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:36.180][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-07-26 16:02:36.181][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-07-26 16:02:36.182][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-26 16:02:36.183][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-26 16:02:36.184][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-07-26 16:02:36.185][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:36.186][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:36.187][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:36.188][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:36.188][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:36.189][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:36.190][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:36.191][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:36.192][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:36.193][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:36.194][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:36.195][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:36.196][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:36.197][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:36.198][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:36.199][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:36.199][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:36.205][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:36.206][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:36.206][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:36.207][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:36.208][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:36.209][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:36.210][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:36.211][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:36.212][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:36.213][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:36.214][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:36.215][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:36.216][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:36.216][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:36.217][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:36.218][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:36.219][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:36.220][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:36.221][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:36.222][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-26 16:02:36.223][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:36.224][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:36.224][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:36.225][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:36.226][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:36.227][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:36.228][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:36.229][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:36.230][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:36.231][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:36.232][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:36.232][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-07-26 16:02:36.233][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-07-26 16:02:36.234][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:36.235][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:36.236][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:36.237][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:36.238][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:36.239][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:36.240][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:36.241][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:36.241][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:36.242][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:36.243][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:36.244][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:36.245][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:36.246][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:36.247][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:36.248][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:36.249][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:36.249][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:36.250][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:36.251][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:36.252][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:36.253][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:36.254][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:36.255][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:36.256][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:36.257][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:36.257][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:36.258][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:36.259][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:36.260][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:36.261][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:36.262][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:36.263][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:36.264][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:36.265][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:36.266][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:36.266][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:36.267][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:36.268][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-26 16:02:36.269][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:36.270][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:36.271][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:36.272][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:36.273][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:36.274][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:36.274][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:36.275][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:36.276][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:36.277][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:36.278][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:36.279][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-07-26 16:02:36.280][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-07-26 16:02:36.281][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:36.281][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:36.282][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-07-26 16:02:36.283][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-07-26 16:02:36.284][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:36.285][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:36.286][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:36.287][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:36.288][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:36.289][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:36.290][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:36.290][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:36.291][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:36.292][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:36.293][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:36.294][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:36.295][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:36.296][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:36.297][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:36.298][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:36.298][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:36.299][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:36.300][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:36.301][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:36.302][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:36.303][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:36.304][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:36.305][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:36.306][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:36.306][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:36.307][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:36.308][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:36.309][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:36.310][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:36.311][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:36.312][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:36.313][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-26 16:02:36.314][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:36.314][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:36.315][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:36.316][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:36.317][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:36.318][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:36.319][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:36.320][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:36.321][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:36.322][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:36.322][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:36.323][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-07-26 16:02:36.324][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:36.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:36.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:36.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:36.328][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:36.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:36.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:36.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:36.332][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:36.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:36.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:36.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:36.335][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:36.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:36.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:36.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:36.339][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:36.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:36.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:36.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:36.343][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:36.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:36.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:36.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:36.347][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:36.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:36.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:36.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:36.350][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:36.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:36.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:36.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:36.354][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:36.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:36.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:36.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:36.358][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:36.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:36.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:36.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:36.361][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:36.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:36.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:36.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:36.365][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:36.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:36.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:36.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:36.369][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:36.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:36.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:36.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:36.372][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:36.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:36.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:36.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:36.376][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:36.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:36.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:36.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:36.380][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:36.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:36.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:36.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:36.384][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:36.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:36.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:36.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:36.387][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:36.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:36.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:36.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:36.391][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:36.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:36.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:36.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:36.395][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:36.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:36.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:36.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:36.398][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:36.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:36.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:36.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:36.402][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:36.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:36.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:36.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:36.406][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:36.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:36.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:36.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:36.409][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:36.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:36.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:36.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:36.413][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-26 16:02:36.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:36.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:36.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:36.417][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-26 16:02:36.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:36.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:36.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:36.421][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-26 16:02:36.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:36.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:36.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:36.424][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:36.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:36.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:36.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:36.428][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:36.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:36.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:36.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:36.432][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:36.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:36.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:36.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:36.436][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:36.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:36.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:36.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:36.439][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:36.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:36.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:36.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:36.443][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:36.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:36.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:36.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:36.456][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [62447, 0, 62447, C30H50, InChI=1S/C30H50/c1-21(2)11-9-12-22(3)23-15-19-29(7)24(23)13-14-26-28(6)18-10-17-27(4,5)25(28)16-20-30(26,29)8/h11,23-26H,3,9-10,12-20H2,1-2,4-8H3/t23-,24-,25+,26-,28+,29-,30-/m1/s1, ...].
biodb.DEBUG[2025-07-26 16:02:36.457][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-07-26 16:02:36.458][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-07-26 16:02:36.461][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:36.462][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:36.463][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:36.467][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:36.468][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:36.468][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:36.469][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-07-26 16:02:36.472][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.29*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-07-26 16:02:36.474][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-07-26 16:02:36.477][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/aad5aa7c63b98774a5df46d96a4e7cac.content.
sched.DEBUG[2025-07-26 16:02:36.477][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-07-26 16:02:36.480][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:36.480][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:36.481][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:36.485][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:36.486][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:36.487][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:36.488][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:36.489][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:36.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:36.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:36.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:36.492][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:36.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:36.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:36.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:36.496][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:36.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:36.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:36.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:36.500][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:36.501][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:36.501][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:36.505][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:36.506][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:36.507][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:36.508][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:36.509][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:36.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:36.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:36.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:36.512][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:36.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:36.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:36.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:36.516][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:36.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:36.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:36.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:36.520][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:36.521][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:36.521][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:36.525][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:36.526][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:36.527][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:36.528][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:36.529][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:36.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:36.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:36.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:36.532][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:36.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:36.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:36.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:36.536][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:36.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:36.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:36.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:36.540][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-07-26 16:02:36.541][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:36.542][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:36.543][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:36.547][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:36.547][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:36.548][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:36.549][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:36.550][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:36.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:36.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:36.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:36.554][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:36.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:36.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:36.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:36.557][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:36.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:36.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:36.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:36.561][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:36.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:36.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:36.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:36.565][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:36.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:36.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:36.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:36.568][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:36.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:36.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:36.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:36.572][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:36.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:36.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:36.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:36.575][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:36.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:36.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:36.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:36.579][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:36.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:36.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:36.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:36.583][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:36.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:36.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:36.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:36.586][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:36.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:36.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:36.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:36.590][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:36.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:36.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:36.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:36.594][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:36.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:36.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:36.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:36.597][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:36.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:36.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:36.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:36.601][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:36.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:36.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:36.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:36.605][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:36.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:36.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:36.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:36.608][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:36.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:36.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:36.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:36.612][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:36.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:36.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:36.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:36.616][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-26 16:02:36.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:36.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:36.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:36.619][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-26 16:02:36.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:36.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:36.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:36.623][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:36.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:36.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:36.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:36.627][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:36.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:36.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:36.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:36.630][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:36.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:36.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:36.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:36.634][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:36.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:36.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:36.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:36.637][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-07-26 16:02:36.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-07-26 16:02:36.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:36.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:36.641][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-07-26 16:02:36.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-07-26 16:02:36.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:36.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:36.645][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-07-26 16:02:36.646][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-07-26 16:02:36.646][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-26 16:02:36.647][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-26 16:02:36.648][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-07-26 16:02:36.649][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:36.650][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:36.651][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:36.652][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:36.653][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:36.654][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:36.655][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:36.655][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:36.656][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:36.657][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:36.658][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:36.659][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:36.660][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:36.661][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:36.662][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:36.663][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:36.664][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:36.664][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:36.665][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:36.666][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:36.667][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:36.668][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:36.669][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:36.670][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:36.671][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:36.672][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:36.673][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:36.673][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:36.674][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:36.675][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:36.676][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:36.677][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:36.678][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:36.679][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:36.680][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:36.681][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:36.682][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-26 16:02:36.683][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:36.683][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:36.684][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:36.685][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:36.686][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:36.691][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:36.692][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:36.693][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:36.694][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:36.695][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:36.696][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:36.697][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-07-26 16:02:36.698][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-07-26 16:02:36.699][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:36.700][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:36.700][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:36.701][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:36.702][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:36.703][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:36.704][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:36.705][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:36.706][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:36.707][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:36.708][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:36.709][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:36.709][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:36.710][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:36.711][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:36.712][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:36.713][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:36.714][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:36.715][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:36.716][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:36.717][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:36.717][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:36.718][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:36.719][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:36.720][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:36.721][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:36.722][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:36.723][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:36.724][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:36.725][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:36.726][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:36.726][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:36.727][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:36.728][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:36.729][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:36.730][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:36.731][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:36.732][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:36.733][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-26 16:02:36.734][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:36.735][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:36.735][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:36.736][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:36.737][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:36.738][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:36.739][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:36.740][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:36.741][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:36.742][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:36.742][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:36.743][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-07-26 16:02:36.744][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-07-26 16:02:36.745][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:36.746][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:36.747][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-07-26 16:02:36.748][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-07-26 16:02:36.749][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:36.750][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:36.751][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:36.751][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:36.752][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:36.753][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:36.754][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:36.755][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:36.756][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:36.757][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:36.758][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:36.759][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:36.759][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:36.760][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:36.761][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:36.762][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:36.763][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:36.764][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:36.765][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:36.766][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:36.767][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:36.767][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:36.768][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:36.769][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:36.770][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:36.771][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:36.772][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:36.773][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:36.774][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:36.775][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:36.775][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:36.776][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:36.777][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:36.778][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:36.779][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:36.780][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:36.781][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-26 16:02:36.782][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:36.783][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:36.783][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:36.784][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:36.785][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:36.786][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:36.787][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:36.788][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:36.789][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:36.790][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:36.791][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:36.791][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-07-26 16:02:36.792][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:36.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:36.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:36.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:36.796][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:36.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:36.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:36.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:36.800][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:36.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:36.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:36.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:36.803][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:36.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:36.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:36.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:36.807][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:36.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:36.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:36.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:36.811][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:36.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:36.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:36.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:36.814][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:36.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:36.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:36.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:36.818][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:36.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:36.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:36.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:36.822][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:36.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:36.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:36.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:36.825][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:36.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:36.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:36.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:36.829][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:36.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:36.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:36.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:36.833][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:36.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:36.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:36.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:36.836][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:36.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:36.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:36.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:36.840][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:36.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:36.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:36.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:36.844][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:36.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:36.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:36.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:36.848][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:36.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:36.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:36.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:36.851][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:36.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:36.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:36.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:36.855][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:36.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:36.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:36.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:36.859][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:36.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:36.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:36.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:36.862][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:36.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:36.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:36.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:36.866][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:36.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:36.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:36.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:36.870][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:36.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:36.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:36.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:36.873][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:36.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:36.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:36.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:36.877][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:36.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:36.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:36.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:36.881][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:36.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:36.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:36.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:36.884][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:36.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:36.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:36.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:36.888][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:36.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:36.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:36.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:36.892][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-26 16:02:36.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:36.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:36.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:36.896][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-26 16:02:36.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:36.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:36.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:36.899][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-26 16:02:36.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:36.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:36.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:36.903][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:36.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:36.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:36.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:36.907][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:36.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:36.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:36.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:36.910][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:36.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:36.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:36.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:36.914][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:36.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:36.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:36.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:36.918][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:36.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:36.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:36.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:36.921][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:36.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:36.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:36.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:36.935][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [4781, 0, 4781, C29H40N2O4, InChI=1S/C29H40N2O4/c1-6-18-17-31-10-8-20-14-27(33-3)29(35-5)16-23(20)25(31)12-21(18)11-24-22-15-28(34-4)26(32-2)13-19(22)7-9-30-24/h13-16,18,21,24-25,30H,6-12,17H2,1-5H3/t18-,21-,24+,25-/m0/s1, ...].
biodb.DEBUG[2025-07-26 16:02:36.936][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:36.937][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:36.938][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:36.942][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:36.943][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:36.944][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:36.945][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:36.946][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:36.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:36.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:36.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:36.949][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:36.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:36.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:36.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:36.953][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:36.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:36.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:36.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:36.957][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:36.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:36.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:36.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:36.960][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:36.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:36.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:36.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:36.964][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:36.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:36.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:36.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:36.967][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:36.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:36.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:36.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:36.971][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:36.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:36.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:36.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:36.975][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:36.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:36.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:36.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:36.978][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:36.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:36.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:36.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:36.982][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:36.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:36.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:36.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:36.985][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:36.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:36.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:36.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:36.989][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:36.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:36.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:36.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:36.993][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:36.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:36.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:36.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:36.996][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:36.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:36.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:36.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:37.000][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:37.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:37.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:37.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:37.004][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:37.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:37.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:37.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:37.007][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:37.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:37.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:37.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:37.011][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-26 16:02:37.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:37.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:37.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:37.015][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-26 16:02:37.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:37.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:37.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:37.018][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:37.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:37.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:37.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:37.022][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:37.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:37.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:37.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:37.025][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:37.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:37.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:37.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:37.029][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:37.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:37.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:37.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:37.033][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-07-26 16:02:37.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-07-26 16:02:37.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:37.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:37.036][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-07-26 16:02:37.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-07-26 16:02:37.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:37.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:37.040][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-07-26 16:02:37.041][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-07-26 16:02:37.042][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-26 16:02:37.042][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-26 16:02:37.043][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-07-26 16:02:37.044][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:37.045][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:37.046][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:37.047][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:37.048][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:37.049][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:37.050][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:37.050][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:37.051][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:37.052][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:37.053][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:37.054][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:37.055][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:37.056][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:37.057][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:37.058][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:37.058][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:37.059][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:37.060][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:37.061][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:37.062][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:37.063][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:37.064][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:37.065][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:37.066][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:37.067][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:37.067][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:37.068][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:37.069][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:37.070][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:37.071][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:37.072][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:37.073][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:37.074][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:37.075][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:37.076][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:37.076][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-26 16:02:37.077][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:37.078][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:37.079][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:37.080][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:37.081][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:37.082][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:37.083][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:37.084][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:37.085][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:37.086][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:37.086][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:37.087][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-07-26 16:02:37.088][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-07-26 16:02:37.089][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:37.090][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:37.091][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:37.092][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:37.093][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:37.094][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:37.095][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:37.096][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:37.096][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:37.097][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:37.098][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:37.099][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:37.100][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:37.101][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:37.102][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:37.103][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:37.104][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:37.104][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:37.105][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:37.106][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:37.107][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:37.108][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:37.109][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:37.110][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:37.111][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:37.112][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:37.113][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:37.114][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:37.114][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:37.115][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:37.116][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:37.117][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:37.118][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:37.119][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:37.120][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:37.121][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:37.122][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:37.122][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:37.123][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-26 16:02:37.124][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:37.125][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:37.126][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:37.127][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:37.128][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:37.129][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:37.130][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:37.131][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:37.132][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:37.132][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:37.133][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:37.134][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-07-26 16:02:37.135][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-07-26 16:02:37.136][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:37.137][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:37.138][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-07-26 16:02:37.139][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-07-26 16:02:37.140][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:37.141][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:37.142][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:37.142][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:37.143][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:37.144][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:37.145][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:37.146][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:37.147][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:37.148][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:37.149][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:37.150][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:37.151][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:37.152][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:37.152][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:37.153][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:37.154][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:37.155][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:37.156][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:37.157][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:37.158][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:37.159][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:37.160][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:37.161][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:37.162][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:37.163][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:37.163][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:37.164][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:37.165][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:37.166][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:37.167][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:37.168][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:37.169][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-26 16:02:37.170][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:37.171][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:37.176][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:37.177][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:37.178][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:37.179][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:37.179][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:37.180][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:37.181][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:37.182][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:37.183][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:37.184][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-07-26 16:02:37.185][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:37.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:37.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:37.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:37.188][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:37.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:37.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:37.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:37.192][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:37.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:37.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:37.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:37.196][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:37.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:37.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:37.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:37.199][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:37.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:37.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:37.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:37.203][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:37.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:37.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:37.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:37.207][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:37.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:37.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:37.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:37.210][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:37.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:37.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:37.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:37.214][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:37.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:37.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:37.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:37.218][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:37.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:37.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:37.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:37.221][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:37.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:37.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:37.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:37.225][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:37.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:37.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:37.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:37.229][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:37.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:37.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:37.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:37.232][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:37.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:37.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:37.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:37.236][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:37.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:37.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:37.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:37.240][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:37.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:37.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:37.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:37.243][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:37.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:37.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:37.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:37.247][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:37.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:37.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:37.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:37.251][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:37.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:37.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:37.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:37.254][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:37.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:37.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:37.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:37.258][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:37.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:37.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:37.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:37.262][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:37.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:37.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:37.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:37.265][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:37.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:37.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:37.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:37.269][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:37.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:37.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:37.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:37.273][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-26 16:02:37.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:37.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:37.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:37.276][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-26 16:02:37.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:37.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:37.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:37.280][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-26 16:02:37.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:37.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:37.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:37.284][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:37.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:37.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:37.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:37.287][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:37.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:37.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:37.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:37.291][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:37.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:37.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:37.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:37.295][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:37.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:37.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:37.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:37.298][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:37.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:37.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:37.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:37.302][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:37.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:37.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:37.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:37.311][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [91601, 0, 91601, C29H40N2O4, InChI=1S/C29H40N2O4/c1-6-18-17-31-10-8-20-14-27(33-3)29(35-5)16-23(20)25(31)12-21(18)11-24-22-15-28(34-4)26(32-2)13-19(22)7-9-30-24/h13-16,18,21,24-25,30H,6-12,17H2,1-5H3/t18-,21-,24?,25?/m0/s1, ...].
biodb.DEBUG[2025-07-26 16:02:37.312][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:37.313][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:37.313][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:37.318][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:37.318][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:37.319][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:37.320][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:37.321][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:37.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:37.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:37.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:37.325][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:37.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:37.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:37.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:37.328][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:37.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:37.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:37.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:37.332][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:37.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:37.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:37.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:37.336][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:37.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:37.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:37.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:37.339][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:37.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:37.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:37.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:37.343][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:37.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:37.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:37.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:37.347][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:37.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:37.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:37.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:37.350][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:37.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:37.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:37.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:37.354][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:37.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:37.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:37.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:37.358][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:37.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:37.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:37.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:37.361][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:37.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:37.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:37.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:37.365][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:37.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:37.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:37.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:37.369][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:37.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:37.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:37.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:37.372][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:37.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:37.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:37.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:37.376][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:37.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:37.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:37.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:37.380][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:37.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:37.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:37.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:37.383][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:37.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:37.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:37.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:37.387][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-26 16:02:37.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:37.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:37.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:37.391][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-26 16:02:37.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:37.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:37.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:37.394][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:37.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:37.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:37.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:37.398][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:37.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:37.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:37.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:37.402][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:37.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:37.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:37.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:37.406][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:37.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:37.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:37.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:37.409][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-07-26 16:02:37.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-07-26 16:02:37.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:37.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:37.413][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-07-26 16:02:37.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-07-26 16:02:37.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:37.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:37.421][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-07-26 16:02:37.422][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-07-26 16:02:37.423][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-26 16:02:37.424][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-26 16:02:37.425][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-07-26 16:02:37.426][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:37.427][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:37.428][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:37.428][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:37.429][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:37.430][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:37.431][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:37.432][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:37.433][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:37.434][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:37.435][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:37.436][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:37.436][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:37.437][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:37.438][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:37.439][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:37.440][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:37.441][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:37.442][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:37.443][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:37.444][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:37.445][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:37.445][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:37.446][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:37.447][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:37.448][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:37.449][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:37.450][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:37.451][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:37.452][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:37.453][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:37.453][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:37.454][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:37.455][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:37.456][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:37.457][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:37.458][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-26 16:02:37.459][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:37.460][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:37.460][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:37.461][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:37.462][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:37.463][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:37.464][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:37.465][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:37.466][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:37.467][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:37.468][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:37.468][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-07-26 16:02:37.469][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-07-26 16:02:37.470][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:37.471][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:37.472][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:37.473][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:37.474][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:37.475][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:37.476][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:37.477][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:37.477][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:37.478][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:37.479][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:37.480][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:37.481][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:37.482][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:37.483][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:37.484][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:37.485][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:37.485][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:37.486][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:37.487][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:37.488][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:37.489][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:37.490][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:37.491][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:37.492][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:37.493][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:37.493][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:37.494][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:37.495][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:37.496][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:37.497][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:37.498][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:37.499][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:37.500][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:37.501][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:37.501][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:37.502][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:37.503][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:37.504][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-26 16:02:37.505][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:37.506][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:37.507][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:37.508][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:37.509][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:37.510][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:37.510][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:37.511][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:37.512][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:37.513][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:37.514][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:37.515][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-07-26 16:02:37.516][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-07-26 16:02:37.517][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:37.517][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:37.518][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-07-26 16:02:37.519][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-07-26 16:02:37.520][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:37.521][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:37.522][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:37.523][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:37.524][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:37.525][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:37.526][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:37.526][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:37.527][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:37.528][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:37.529][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:37.530][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:37.531][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:37.532][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:37.533][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:37.534][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:37.534][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:37.535][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:37.536][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:37.537][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:37.538][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:37.539][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:37.540][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:37.541][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:37.542][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:37.543][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:37.543][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:37.544][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:37.545][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:37.546][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:37.547][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:37.548][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:37.549][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-26 16:02:37.550][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:37.551][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:37.551][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:37.552][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:37.553][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:37.554][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:37.555][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:37.556][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:37.557][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:37.558][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:37.559][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:37.560][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-07-26 16:02:37.561][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:37.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:37.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:37.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:37.564][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:37.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:37.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:37.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:37.568][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:37.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:37.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:37.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:37.572][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:37.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:37.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:37.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:37.575][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:37.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:37.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:37.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:37.579][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:37.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:37.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:37.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:37.583][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:37.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:37.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:37.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:37.587][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:37.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:37.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:37.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:37.590][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:37.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:37.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:37.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:37.594][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:37.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:37.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:37.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:37.598][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:37.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:37.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:37.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:37.601][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:37.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:37.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:37.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:37.605][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:37.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:37.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:37.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:37.609][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:37.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:37.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:37.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:37.612][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:37.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:37.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:37.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:37.616][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:37.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:37.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:37.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:37.620][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:37.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:37.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:37.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:37.624][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:37.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:37.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:37.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:37.627][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:37.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:37.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:37.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:37.631][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:37.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:37.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:37.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:37.635][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:37.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:37.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:37.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:37.639][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:37.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:37.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:37.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:37.642][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:37.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:37.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:37.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:37.646][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:37.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:37.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:37.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:37.650][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-26 16:02:37.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:37.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:37.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:37.653][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-26 16:02:37.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:37.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:37.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:37.661][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-26 16:02:37.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:37.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:37.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:37.665][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:37.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:37.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:37.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:37.669][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:37.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:37.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:37.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:37.672][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:37.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:37.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:37.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:37.676][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:37.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:37.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:37.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:37.680][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:37.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:37.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:37.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:37.683][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:37.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:37.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:37.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:37.692][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [95147, 0, 95147, C29H40N2O4, InChI=1S/C29H40N2O4/c1-3-18-16(2)14-22-20(18)10-11-21-19-6-4-8-26(33)30-13-5-7-24-28(34)27(29(35)31-24)25(32)12-9-17(19)15-23(21)22/h4,8,10-11,16-24,27H,3,5-7,9,12-15H2,1-2H3,(H,30,33)(H,31,35)/t16-,17-,18-,19+,20+,21-,22+,23+,24+,27?/m1/s1, ...].
biodb.DEBUG[2025-07-26 16:02:37.693][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-07-26 16:02:37.694][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-07-26 16:02:37.696][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:37.697][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:37.698][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:37.702][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:37.703][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:37.704][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:37.705][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-07-26 16:02:37.707][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.17*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-07-26 16:02:37.709][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-07-26 16:02:37.713][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/039d0a183be9e894c19f49abb7cadca8.content.
sched.DEBUG[2025-07-26 16:02:37.714][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-07-26 16:02:37.716][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:37.717][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:37.718][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:37.722][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:37.723][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:37.724][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:37.725][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:37.726][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:37.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:37.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:37.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:37.729][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:37.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:37.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:37.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:37.733][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:37.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:37.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:37.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:37.737][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:37.737][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:37.738][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:37.742][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:37.743][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:37.744][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:37.744][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:37.746][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:37.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:37.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:37.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:37.749][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:37.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:37.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:37.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:37.753][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:37.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:37.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:37.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:37.756][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:37.757][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:37.758][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:37.762][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:37.763][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:37.763][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:37.764][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:37.765][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:37.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:37.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:37.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:37.769][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:37.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:37.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:37.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:37.773][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:37.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:37.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:37.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-26 16:02:37.776][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-07-26 16:02:37.778][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:37.779][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:37.779][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:37.783][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:37.784][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:37.785][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:37.786][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:37.787][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:37.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:37.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:37.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:37.790][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:37.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:37.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:37.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:37.794][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:37.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:37.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:37.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:37.798][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:37.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:37.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:37.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:37.801][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:37.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:37.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:37.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:37.805][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:37.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:37.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:37.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:37.809][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:37.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:37.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:37.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:37.812][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:37.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:37.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:37.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:37.816][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:37.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:37.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:37.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:37.820][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:37.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:37.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:37.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:37.823][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:37.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:37.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:37.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:37.827][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:37.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:37.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:37.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:37.831][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:37.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:37.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:37.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:37.834][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:37.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:37.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:37.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:37.838][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:37.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:37.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:37.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:37.842][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:37.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:37.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:37.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:37.845][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:37.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:37.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:37.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:37.849][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:37.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:37.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:37.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:37.853][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-26 16:02:37.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:37.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:37.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:37.856][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-26 16:02:37.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:37.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:37.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:37.860][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:37.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:37.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:37.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:37.864][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:37.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:37.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:37.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:37.867][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:37.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:37.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:37.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:37.871][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:37.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:37.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:37.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:37.875][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-07-26 16:02:37.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-07-26 16:02:37.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:37.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:37.878][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-07-26 16:02:37.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-07-26 16:02:37.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:37.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:37.882][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-07-26 16:02:37.883][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-07-26 16:02:37.884][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-26 16:02:37.885][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-26 16:02:37.886][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-07-26 16:02:37.886][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:37.887][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:37.888][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:37.889][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:37.890][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:37.891][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:37.892][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:37.893][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:37.894][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:37.895][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:37.896][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:37.896][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:37.897][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:37.898][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:37.899][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:37.900][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:37.905][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:37.907][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:37.907][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:37.908][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:37.909][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:37.910][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:37.911][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:37.912][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:37.913][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:37.914][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:37.915][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:37.915][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:37.916][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:37.917][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:37.918][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:37.919][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:37.920][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:37.921][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:37.922][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:37.923][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:37.923][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-26 16:02:37.924][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:37.925][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:37.926][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:37.927][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:37.928][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:37.929][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:37.930][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:37.931][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:37.932][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:37.932][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:37.933][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:37.934][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-07-26 16:02:37.935][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-07-26 16:02:37.936][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:37.937][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:37.938][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:37.939][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:37.939][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:37.940][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:37.941][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:37.942][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:37.943][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:37.944][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:37.945][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:37.946][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:37.947][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:37.947][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:37.948][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:37.949][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:37.950][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:37.951][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:37.952][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:37.953][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:37.954][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:37.954][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:37.955][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:37.956][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:37.957][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:37.958][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:37.959][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:37.960][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:37.961][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:37.962][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:37.963][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:37.964][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:37.964][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:37.965][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:37.966][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:37.967][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:37.968][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:37.969][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:37.970][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-26 16:02:37.971][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:37.972][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:37.972][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:37.973][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:37.974][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:37.975][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:37.976][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:37.977][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:37.978][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:37.979][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:37.979][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:37.980][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-07-26 16:02:37.981][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-07-26 16:02:37.982][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:37.983][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:37.984][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-07-26 16:02:37.985][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-07-26 16:02:37.986][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:37.987][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:37.988][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:37.988][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:37.989][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:37.990][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:37.991][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:37.992][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:37.993][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:37.994][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:37.995][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:37.996][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:37.996][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:37.997][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:37.998][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:37.999][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:38.000][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:38.001][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:38.002][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:38.003][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:38.003][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:38.004][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:38.005][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:38.006][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:38.007][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:38.008][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:38.009][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:38.010][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:38.011][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:38.012][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:38.012][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:38.013][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:38.014][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:38.015][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:38.016][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:38.017][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:38.018][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-26 16:02:38.019][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:38.020][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:38.020][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:38.021][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:38.022][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:38.023][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:38.024][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:38.025][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:38.026][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:38.027][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:38.028][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:38.029][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-07-26 16:02:38.029][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:38.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:38.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:38.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:38.033][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:38.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:38.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:38.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:38.037][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:38.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:38.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:38.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:38.040][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:38.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:38.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:38.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:38.044][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:38.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:38.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:38.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:38.048][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:38.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:38.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:38.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:38.052][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:38.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:38.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:38.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:38.055][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:38.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:38.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:38.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:38.059][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:38.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:38.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:38.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:38.063][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:38.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:38.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:38.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:38.066][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:38.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:38.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:38.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:38.070][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:38.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:38.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:38.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:38.074][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:38.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:38.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:38.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:38.078][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:38.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:38.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:38.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:38.081][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:38.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:38.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:38.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:38.085][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:38.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:38.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:38.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:38.089][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:38.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:38.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:38.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:38.092][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:38.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:38.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:38.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:38.096][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:38.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:38.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:38.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:38.100][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:38.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:38.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:38.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:38.103][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:38.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:38.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:38.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:38.107][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:38.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:38.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:38.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:38.111][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:38.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:38.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:38.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:38.115][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:38.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:38.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:38.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:38.118][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:38.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:38.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:38.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:38.122][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:38.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:38.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:38.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:38.126][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:38.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:38.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:38.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:38.130][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-26 16:02:38.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:38.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:38.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:38.133][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-26 16:02:38.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:38.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:38.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:38.137][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-26 16:02:38.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:38.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:38.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:38.141][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:38.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:38.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:38.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:38.149][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:38.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:38.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:38.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:38.153][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:38.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:38.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:38.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:38.156][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:38.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:38.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:38.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:38.160][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:38.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:38.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:38.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:38.164][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:38.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:38.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:38.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:38.173][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [636, 0, 636, C24H26O6, InChI=1S/C24H26O6/c1-12(2)6-7-14-19-17(11-16(26)22(14)28-5)29-18-10-15(25)13-8-9-24(3,4)30-23(13)20(18)21(19)27/h6,10-11,25-26H,7-9H2,1-5H3, ...].
biodb.DEBUG[2025-07-26 16:02:38.174][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:38.175][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:38.175][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:38.179][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:38.180][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:38.181][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:38.182][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:38.183][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:38.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:38.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:38.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:38.187][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:38.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:38.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:38.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:38.190][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:38.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:38.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:38.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:38.194][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:38.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:38.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:38.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:38.198][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:38.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:38.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:38.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:38.201][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:38.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:38.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:38.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:38.205][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:38.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:38.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:38.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:38.209][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:38.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:38.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:38.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:38.212][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:38.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:38.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:38.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:38.216][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:38.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:38.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:38.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:38.219][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:38.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:38.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:38.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:38.223][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:38.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:38.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:38.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:38.227][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:38.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:38.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:38.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:38.230][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:38.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:38.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:38.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:38.234][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:38.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:38.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:38.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:38.237][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:38.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:38.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:38.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:38.241][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:38.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:38.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:38.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:38.245][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:38.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:38.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:38.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:38.248][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-26 16:02:38.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:38.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:38.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:38.252][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-26 16:02:38.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:38.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:38.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:38.256][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:38.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:38.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:38.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:38.259][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:38.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:38.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:38.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:38.263][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:38.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:38.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:38.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:38.266][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:38.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:38.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:38.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:38.270][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-07-26 16:02:38.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-07-26 16:02:38.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:38.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:38.274][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-07-26 16:02:38.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-07-26 16:02:38.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:38.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:38.277][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-07-26 16:02:38.278][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-07-26 16:02:38.279][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-26 16:02:38.280][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-26 16:02:38.281][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-07-26 16:02:38.282][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:38.283][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:38.284][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:38.285][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:38.286][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:38.287][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:38.287][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:38.288][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:38.289][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:38.290][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:38.291][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:38.292][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:38.293][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:38.294][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:38.295][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:38.296][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:38.296][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:38.297][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:38.298][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:38.299][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:38.300][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:38.301][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:38.302][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:38.303][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:38.304][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:38.305][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:38.306][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:38.306][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:38.307][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:38.308][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:38.309][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:38.310][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:38.311][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:38.312][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:38.313][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:38.314][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:38.315][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-26 16:02:38.316][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:38.317][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:38.317][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:38.318][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:38.319][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:38.320][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:38.321][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:38.322][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:38.323][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:38.324][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:38.325][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:38.326][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-07-26 16:02:38.326][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-07-26 16:02:38.327][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:38.328][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:38.329][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:38.330][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:38.331][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:38.332][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:38.333][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:38.334][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:38.335][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:38.336][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:38.337][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:38.338][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:38.338][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:38.339][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:38.340][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:38.341][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:38.342][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:38.343][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:38.344][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:38.345][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:38.346][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:38.347][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:38.347][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:38.348][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:38.349][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:38.350][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:38.351][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:38.352][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:38.353][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:38.354][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:38.355][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:38.356][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:38.357][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:38.357][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:38.358][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:38.359][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:38.360][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:38.361][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:38.362][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-26 16:02:38.363][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:38.364][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:38.365][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:38.366][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:38.366][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:38.367][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:38.368][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:38.369][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:38.370][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:38.371][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:38.372][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:38.373][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-07-26 16:02:38.374][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-07-26 16:02:38.375][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:38.375][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:38.376][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-07-26 16:02:38.377][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-07-26 16:02:38.378][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:38.379][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:38.380][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:38.381][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:38.382][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:38.383][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:38.384][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:38.389][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:38.390][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:38.391][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:38.392][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:38.392][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:38.393][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:38.394][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:38.395][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:38.396][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:38.397][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:38.398][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:38.399][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:38.400][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:38.400][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:38.401][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:38.402][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:38.403][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:38.404][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:38.405][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:38.406][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:38.407][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:38.407][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:38.408][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:38.409][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:38.410][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:38.411][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-26 16:02:38.412][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:38.413][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:38.414][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:38.415][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:38.415][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:38.416][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:38.417][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:38.418][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:38.419][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:38.420][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:38.421][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:38.422][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-07-26 16:02:38.423][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:38.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:38.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:38.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:38.426][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:38.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:38.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:38.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:38.430][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:38.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:38.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:38.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:38.434][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:38.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:38.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:38.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:38.437][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:38.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:38.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:38.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:38.441][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:38.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:38.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:38.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:38.445][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:38.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:38.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:38.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:38.448][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:38.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:38.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:38.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:38.452][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:38.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:38.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:38.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:38.456][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:38.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:38.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:38.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:38.459][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:38.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:38.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:38.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:38.463][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:38.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:38.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:38.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:38.466][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:38.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:38.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:38.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:38.470][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:38.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:38.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:38.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:38.474][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:38.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:38.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:38.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:38.477][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:38.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:38.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:38.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:38.481][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:38.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:38.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:38.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:38.485][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:38.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:38.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:38.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:38.488][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:38.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:38.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:38.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:38.492][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:38.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:38.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:38.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:38.495][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:38.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:38.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:38.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:38.499][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:38.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:38.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:38.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:38.503][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:38.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:38.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:38.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:38.506][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:38.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:38.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:38.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:38.510][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-26 16:02:38.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:38.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:38.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:38.514][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-26 16:02:38.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:38.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:38.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:38.517][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-26 16:02:38.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:38.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:38.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:38.521][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:38.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:38.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:38.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:38.525][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:38.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:38.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:38.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:38.528][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:38.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:38.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:38.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:38.532][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:38.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:38.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:38.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:38.536][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:38.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:38.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:38.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:38.540][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:38.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:38.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:38.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:38.549][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [64199, 0, 64199, C24H27ClN2O2, InChI=1S/C24H26N2O2.ClH/c27-24(28)20-9-10-23-22(16-20)21(17-25-23)8-4-5-13-26-14-11-19(12-15-26)18-6-2-1-3-7-18;/h1-3,6-7,9-11,16-17,25H,4-5,8,12-15H2,(H,27,28);1H, ...].
biodb.DEBUG[2025-07-26 16:02:38.549][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-26 16:02:38.550][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:38.551][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:38.555][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:38.556][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:38.557][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:38.558][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-26 16:02:38.559][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:38.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:38.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:38.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:38.563][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:38.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:38.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:38.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:38.566][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:38.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:38.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:38.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:38.570][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:38.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:38.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:38.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:38.574][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:38.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:38.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:38.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:38.577][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:38.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:38.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:38.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:38.581][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:38.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:38.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:38.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:38.585][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:38.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:38.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:38.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:38.588][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:38.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:38.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:38.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:38.592][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:38.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:38.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:38.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:38.596][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:38.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:38.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:38.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:38.599][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:38.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:38.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:38.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:38.603][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:38.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:38.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:38.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:38.607][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:38.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:38.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:38.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:38.610][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:38.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:38.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:38.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:38.614][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:38.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:38.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:38.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:38.618][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:38.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:38.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:38.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:38.622][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:38.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:38.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:38.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:38.625][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-26 16:02:38.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:38.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:38.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:38.634][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-26 16:02:38.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:38.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:38.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:38.637][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:38.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:38.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:38.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:38.641][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:38.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:38.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:38.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:38.644][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:38.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:38.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:38.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:38.648][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:38.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:38.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:38.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:38.652][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-07-26 16:02:38.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-07-26 16:02:38.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:38.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:38.655][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-07-26 16:02:38.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-07-26 16:02:38.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:38.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:38.659][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-07-26 16:02:38.660][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-07-26 16:02:38.661][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-26 16:02:38.661][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-26 16:02:38.662][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-07-26 16:02:38.663][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:38.664][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:38.665][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:38.666][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:38.667][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:38.668][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:38.669][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:38.669][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:38.670][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:38.671][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:38.672][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:38.673][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:38.674][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:38.675][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:38.676][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:38.676][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:38.677][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:38.678][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:38.679][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:38.680][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:38.681][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:38.682][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:38.683][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:38.684][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:38.685][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:38.685][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:38.686][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:38.687][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:38.688][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:38.689][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:38.690][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:38.691][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:38.692][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:38.693][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:38.693][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:38.694][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:38.695][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-26 16:02:38.696][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:38.697][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:38.698][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:38.699][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:38.700][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:38.701][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:38.701][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:38.702][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:38.703][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:38.704][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:38.705][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:38.706][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-07-26 16:02:38.707][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-07-26 16:02:38.708][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:38.708][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:38.709][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:38.710][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:38.711][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:38.712][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:38.713][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:38.714][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:38.715][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:38.716][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:38.717][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:38.717][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:38.718][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:38.719][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:38.720][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:38.721][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:38.722][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:38.723][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:38.724][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:38.725][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:38.726][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:38.727][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:38.728][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:38.729][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:38.729][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:38.730][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:38.731][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:38.732][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-26 16:02:38.733][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:38.734][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:38.735][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:38.736][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:38.737][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:38.737][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:38.738][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:38.739][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:38.740][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:38.741][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:38.742][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-26 16:02:38.743][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:38.744][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:38.745][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:38.745][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:38.746][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:38.747][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:38.748][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:38.749][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:38.750][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:38.751][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:38.752][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:38.753][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-07-26 16:02:38.754][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-07-26 16:02:38.754][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:38.755][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:38.756][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-07-26 16:02:38.757][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-07-26 16:02:38.758][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:38.759][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:38.760][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:38.761][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:38.762][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:38.763][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:38.763][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:38.764][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:38.765][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:38.766][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:38.767][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:38.768][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:38.769][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:38.770][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:38.771][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:38.772][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:38.772][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:38.773][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:38.774][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:38.775][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:38.776][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:38.777][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:38.778][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:38.779][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:38.780][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:38.781][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:38.782][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:38.782][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:38.783][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:38.784][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:38.785][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:38.786][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:38.787][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-26 16:02:38.788][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:38.789][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:38.790][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:38.791][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:38.791][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:38.792][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:38.793][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:38.794][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:38.795][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:38.796][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:38.797][ef$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:38.798][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-07-26 16:02:38.799][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:38.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:38.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:38.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:38.802][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:38.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:38.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:38.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:38.806][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-26 16:02:38.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-26 16:02:38.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:38.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:38.810][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:38.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:38.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:38.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:38.813][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:38.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:38.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:38.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:38.817][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-26 16:02:38.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-26 16:02:38.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:38.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:38.821][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:38.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:38.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:38.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:38.825][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:38.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:38.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:38.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:38.828][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-26 16:02:38.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-26 16:02:38.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:38.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:38.832][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:38.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:38.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:38.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:38.836][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:38.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:38.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:38.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:38.839][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-26 16:02:38.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-26 16:02:38.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:38.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:38.843][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:38.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:38.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:38.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:38.847][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:38.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:38.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:38.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:38.850][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-26 16:02:38.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-26 16:02:38.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:38.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:38.854][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:38.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:38.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:38.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:38.858][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:38.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:38.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:38.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:38.861][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-26 16:02:38.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-26 16:02:38.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:38.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:38.865][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:38.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:38.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:38.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:38.873][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:38.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:38.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:38.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:38.877][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:38.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-26 16:02:38.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:38.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:38.880][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:38.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:38.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:38.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:38.884][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:38.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:38.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:38.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:38.888][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:38.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-26 16:02:38.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:38.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:38.891][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-26 16:02:38.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:38.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:38.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:38.895][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-26 16:02:38.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:38.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:38.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:38.898][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-26 16:02:38.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-26 16:02:38.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:38.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:38.902][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:38.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:38.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:38.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:38.906][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:38.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:38.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:38.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:38.909][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-26 16:02:38.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-26 16:02:38.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:38.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:38.913][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:38.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:38.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:38.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:38.917][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:38.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:38.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:38.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:38.920][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-26 16:02:38.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-26 16:02:38.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:38.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:38.929][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [65648, 0, 65648, C24H26O6, InChI=1S/C24H26O6/c1-13(2)9-10-23-20(27)22(28-5)11-14-19(26)18-15(25)7-6-8-16(18)29-24(14,23)17(12-22)21(3,4)30-23/h6-9,11,17,25H,10,12H2,1-5H3/t17-,22-,23-,24+/m0/s1, ...].
biodb.DEBUG[2025-07-26 16:02:38.930][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-07-26 16:02:38.931][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2025-07-26 16:02:38.936][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-07-26 16:02:38.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-07-26 16:02:38.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:38.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:38.940][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-07-26 16:02:38.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-07-26 16:02:38.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:38.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-26 16:02:38.943][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-07-26 16:02:38.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-07-26 16:02:38.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-26 16:02:38.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-07-26 16:02:38.949][biodb$terminate] Closing BiodbMain instance...
biodb.INFO [2025-07-26 16:02:38.950][self$deleteConn] Connector "chebi" deleted.
biodb.DEBUG[2025-07-26 16:02:38.951][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2025-07-26 16:02:38.952][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-26 16:02:38.953][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-26 16:02:38.953][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2025-07-26 16:02:38.954][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-26 16:02:38.955][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2025-07-26 16:02:38.956][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 1264 ]
> 
> proc.time()
   user  system elapsed 
 58.386   1.167  61.639

'R CMD check' output

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### Running command:
###
###   /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD check --test-dir=longtests --no-stop-on-test-error --no-codoc --no-examples --no-manual --ignore-vignettes --check-subdirs=no biodbChebi_1.15.1.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.22-bioc-longtests/meat/biodbChebi.Rcheck’
* using R version 4.5.1 (2025-06-13)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
    GNU Fortran (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
* running under: Ubuntu 24.04.2 LTS
* using session charset: UTF-8
* using options ‘--no-codoc --no-examples --no-manual --ignore-vignettes --no-stop-on-test-error’
* checking for file ‘biodbChebi/DESCRIPTION’ ... OK
* this is package ‘biodbChebi’ version ‘1.15.1’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘biodbChebi’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... SKIPPED
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... SKIPPED
* checking examples ... SKIPPED
* checking for unstated dependencies in ‘longtests’ ... OK
* checking tests in ‘longtests’ ...
  Running ‘testthat.R’
 OK
* DONE

Status: OK

Installation output

biodbChebi.Rcheck/00install.out

* installing *source* package ‘biodbChebi’ ...
** this is package ‘biodbChebi’ version ‘1.15.1’
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (biodbChebi)