Multiple platform build/check report for BioC 3.23 - BUILD results for wpm on kunpeng2

Hostname	OS	Arch (*)	R version	Installed pkgs
nebbiolo1	Linux (Ubuntu 24.04.4 LTS)	x86_64	4.6.0 alpha (2026-04-05 r89794)	4957
kjohnson3	macOS 13.7.7 Ventura	arm64	4.6.0 alpha (2026-04-08 r89818)	4686
kunpeng2	Linux (openEuler 24.03 LTS)	aarch64	R Under development (unstable) (2025-02-19 r87757) -- "Unsuffered Consequences"	4627
Click on any hostname to see more info about the system (e.g. compilers) () as reported by 'uname -p', except on Windows and Mac OS X*

BUILD results for wpm on kunpeng2

To the developers/maintainers of the wpm package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/wpm.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.
- See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host.

raw results

Summary

Package: wpm

Version: 1.21.0

Command: /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data wpm

StartedAt: 2026-04-17 02:26:28 -0000 (Fri, 17 Apr 2026)

EndedAt: 2026-04-17 02:26:36 -0000 (Fri, 17 Apr 2026)

EllapsedTime: 8.0 seconds

RetCode: 1

Status: ERROR

PackageFile: None

PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data wpm
###
##############################################################################
##############################################################################


* checking for file ‘wpm/DESCRIPTION’ ... OK
* preparing ‘wpm’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘wpm_vignette.Rmd’ using rmarkdown

Quitting from wpm_vignette.Rmd:423-432 [create an MSnSet object]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `dyn.load()`:
! unable to load shared object '/home/biocbuild/R/R-devel_2025-02-19/site-library/ncdf4/libs/ncdf4.so':
  libnetcdf.so.19: cannot open shared object file: No such file or directory
---
Backtrace:
    ▆
 1. └─base::loadNamespace(x)
 2.   ├─base::namespaceImport(...)
 3.   └─base::loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]])
 4.     ├─base::namespaceImport(...)
 5.     └─base::loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]])
 6.       └─base::library.dynam(lib, package, package.lib)
 7.         └─base::dyn.load(file, DLLpath = DLLpath, ...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'wpm_vignette.Rmd' failed with diagnostics:
unable to load shared object '/home/biocbuild/R/R-devel_2025-02-19/site-library/ncdf4/libs/ncdf4.so':
  libnetcdf.so.19: cannot open shared object file: No such file or directory
--- failed re-building ‘wpm_vignette.Rmd’

SUMMARY: processing the following file failed:
  ‘wpm_vignette.Rmd’

Error: Vignette re-building failed.
Execution halted