Multiple platform build/check report for BioC 3.22 - BUILD results for wiggleplotr on lconway

Hostname	OS	Arch (*)	R version	Installed pkgs
nebbiolo2	Linux (Ubuntu 24.04.3 LTS)	x86_64	4.5.1 (2025-06-13) -- "Great Square Root"	4822
lconway	macOS 12.7.1 Monterey	x86_64	4.5.1 (2025-06-13) -- "Great Square Root"	4617
kjohnson3	macOS 13.7.7 Ventura	arm64	4.5.1 Patched (2025-06-14 r88325) -- "Great Square Root"	4564
taishan	Linux (openEuler 24.03 LTS)	aarch64	4.5.0 (2025-04-11) -- "How About a Twenty-Six"	4544
Click on any hostname to see more info about the system (e.g. compilers) () as reported by 'uname -p', except on Windows and Mac OS X*

BUILD results for wiggleplotr on lconway

To the developers/maintainers of the wiggleplotr package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/wiggleplotr.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: wiggleplotr

Version: 1.33.0

Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data wiggleplotr

StartedAt: 2025-09-09 18:56:11 -0400 (Tue, 09 Sep 2025)

EndedAt: 2025-09-09 18:56:52 -0400 (Tue, 09 Sep 2025)

EllapsedTime: 41.2 seconds

RetCode: 1

Status: ERROR

PackageFile: None

PackageFileSize: NA

Command output

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### Running command:
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###   /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data wiggleplotr
###
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* checking for file ‘wiggleplotr/DESCRIPTION’ ... OK
* preparing ‘wiggleplotr’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘wiggleplotr.Rmd’ using rmarkdown
2025-09-09 18:56:35.144 R[88988:242487659] XType: com.apple.fonts is not accessible.
2025-09-09 18:56:35.145 R[88988:242487659] XType: XTFontStaticRegistry is enabled.

Quitting from wiggleplotr.Rmd:169-173 [unnamed-chunk-16]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error:
! Unexpected format to the list of available marts.
Please check the following URL manually, and try ?listMarts for advice.
http://jan2020.archive.ensembl.org:80/biomart/martservice?type=registry&requestid=biomaRt
---
Backtrace:
    ▆
 1. └─biomaRt::useMart("ENSEMBL_MART_ENSEMBL", host = "jan2020.archive.ensembl.org")
 2.   └─biomaRt:::.useMart(...)
 3.     └─biomaRt:::.listMarts(...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'wiggleplotr.Rmd' failed with diagnostics:
Unexpected format to the list of available marts.
Please check the following URL manually, and try ?listMarts for advice.
http://jan2020.archive.ensembl.org:80/biomart/martservice?type=registry&requestid=biomaRt
--- failed re-building ‘wiggleplotr.Rmd’

SUMMARY: processing the following file failed:
  ‘wiggleplotr.Rmd’

Error: Vignette re-building failed.
Execution halted