Multiple platform build/check report for BioC 3.22 - BUILD results for vsclust on lconway

Hostname	OS	Arch (*)	R version	Installed pkgs
nebbiolo2	Linux (Ubuntu 24.04.3 LTS)	x86_64	4.5.1 (2025-06-13) -- "Great Square Root"	4821
lconway	macOS 12.7.1 Monterey	x86_64	4.5.1 (2025-06-13) -- "Great Square Root"	4599
kjohnson3	macOS 13.7.7 Ventura	arm64	4.5.1 Patched (2025-06-14 r88325) -- "Great Square Root"	4553
taishan	Linux (openEuler 24.03 LTS)	aarch64	4.5.0 (2025-04-11) -- "How About a Twenty-Six"	4539
Click on any hostname to see more info about the system (e.g. compilers) () as reported by 'uname -p', except on Windows and Mac OS X*

BUILD results for vsclust on lconway

To the developers/maintainers of the vsclust package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/vsclust.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: vsclust

Version: 1.11.1

Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data vsclust

StartedAt: 2025-08-22 18:50:07 -0400 (Fri, 22 Aug 2025)

EndedAt: 2025-08-22 18:54:34 -0400 (Fri, 22 Aug 2025)

EllapsedTime: 267.3 seconds

RetCode: 1

Status: ERROR

PackageFile: None

PackageFileSize: NA

Command output

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### Running command:
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###   /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data vsclust
###
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* checking for file ‘vsclust/DESCRIPTION’ ... OK
* preparing ‘vsclust’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘Integrate_With_Bioconductor_Objects.Rmd’ using rmarkdown
2025-08-22 18:51:07.038 R[55517:92721990] XType: com.apple.fonts is not accessible.
2025-08-22 18:51:07.039 R[55517:92721990] XType: XTFontStaticRegistry is enabled.
--- finished re-building ‘Integrate_With_Bioconductor_Objects.Rmd’

--- re-building ‘Run_VSClust_Workflow.Rmd’ using rmarkdown

Quitting from Run_VSClust_Workflow.Rmd:284-298 [unnamed-chunk-7]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error:
! No result. IDs might not be matching or you do not have any significant enrichments
---
Backtrace:
    ▆
 1. └─vsclust::runFuncEnrich(VSClust_cl, infosource = "KEGG")
 2.   └─shiny::validate(need(!is.null(x), "No result. IDs might not be matching or you do not have any significant enrichments"))
 3.     └─shiny:::reactiveStop(...)
 4.       └─shiny:::stopWithCondition(c("shiny.silent.error", class), message)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'Run_VSClust_Workflow.Rmd' failed with diagnostics:
No result. IDs might not be matching or you do not have any significant enrichments
--- failed re-building ‘Run_VSClust_Workflow.Rmd’

SUMMARY: processing the following file failed:
  ‘Run_VSClust_Workflow.Rmd’

Error: Vignette re-building failed.
Execution halted