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This page was generated on 2024-12-24 11:46 -0500 (Tue, 24 Dec 2024).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 24.04.1 LTS)x86_64R Under development (unstable) (2024-10-21 r87258) -- "Unsuffered Consequences" 4754
palomino7Windows Server 2022 Datacenterx64R Under development (unstable) (2024-10-26 r87273 ucrt) -- "Unsuffered Consequences" 4472
lconwaymacOS 12.7.1 Montereyx86_64R Under development (unstable) (2024-11-20 r87352) -- "Unsuffered Consequences" 4426
kjohnson3macOS 13.7.1 Venturaarm64R Under development (unstable) (2024-11-20 r87352) -- "Unsuffered Consequences" 4381
kunpeng2Linux (openEuler 22.03 LTS-SP1)aarch64R Under development (unstable) (2024-11-24 r87369) -- "Unsuffered Consequences" 4373
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 2237/2274HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
visiumStitched 0.99.15  (landing page)
Nicholas J. Eagles
Snapshot Date: 2024-12-23 13:40 -0500 (Mon, 23 Dec 2024)
git_url: https://git.bioconductor.org/packages/visiumStitched
git_branch: devel
git_last_commit: 4c54019
git_last_commit_date: 2024-12-13 11:30:46 -0500 (Fri, 13 Dec 2024)
nebbiolo1Linux (Ubuntu 24.04.1 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
palomino7Windows Server 2022 Datacenter / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
lconwaymacOS 12.7.1 Monterey / x86_64  OK    ERROR  skippedskipped
kjohnson3macOS 13.7.1 Ventura / arm64  OK    ERROR  skippedskipped
kunpeng2Linux (openEuler 22.03 LTS-SP1) / aarch64  OK    OK    TIMEOUT  

BUILD results for visiumStitched on kjohnson3

To the developers/maintainers of the visiumStitched package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/visiumStitched.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: visiumStitched
Version: 0.99.15
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data visiumStitched
StartedAt: 2024-12-23 17:53:23 -0500 (Mon, 23 Dec 2024)
EndedAt: 2024-12-23 17:54:20 -0500 (Mon, 23 Dec 2024)
EllapsedTime: 56.6 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data visiumStitched
###
##############################################################################
##############################################################################


* checking for file ‘visiumStitched/DESCRIPTION’ ... OK
* preparing ‘visiumStitched’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘misc.Rmd’ using rmarkdown

Quitting from lines 52-62 [normalized_data_download] (misc.Rmd)
Error: processing vignette 'misc.Rmd' failed with diagnostics:
not all 'rnames' found or unique.
--- failed re-building ‘misc.Rmd’

--- re-building ‘visiumStitched.Rmd’ using rmarkdown

Quitting from lines 134-145 [spaceranger_dir] (visiumStitched.Rmd)
Error: processing vignette 'visiumStitched.Rmd' failed with diagnostics:
not all 'rnames' found or unique.
--- failed re-building ‘visiumStitched.Rmd’

SUMMARY: processing the following files failed:
  ‘misc.Rmd’ ‘visiumStitched.Rmd’

Error: Vignette re-building failed.
Execution halted