Back to Multiple platform build/check report for BioC 3.21: simplified long |
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This page was generated on 2024-12-23 11:47 -0500 (Mon, 23 Dec 2024).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
nebbiolo1 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | R Under development (unstable) (2024-10-21 r87258) -- "Unsuffered Consequences" | 4754 |
palomino7 | Windows Server 2022 Datacenter | x64 | R Under development (unstable) (2024-10-26 r87273 ucrt) -- "Unsuffered Consequences" | 4472 |
lconway | macOS 12.7.1 Monterey | x86_64 | R Under development (unstable) (2024-11-20 r87352) -- "Unsuffered Consequences" | 4426 |
kjohnson3 | macOS 13.7.1 Ventura | arm64 | R Under development (unstable) (2024-11-20 r87352) -- "Unsuffered Consequences" | 4381 |
kunpeng2 | Linux (openEuler 22.03 LTS-SP1) | aarch64 | R Under development (unstable) (2024-11-24 r87369) -- "Unsuffered Consequences" | 4372 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
Package 2229/2274 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
velociraptor 1.17.0 (landing page) Kevin Rue-Albrecht
| nebbiolo1 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | OK | OK | WARNINGS | |||||||||
palomino7 | Windows Server 2022 Datacenter / x64 | OK | OK | WARNINGS | OK | |||||||||
lconway | macOS 12.7.1 Monterey / x86_64 | OK | OK | WARNINGS | OK | |||||||||
kjohnson3 | macOS 13.7.1 Ventura / arm64 | OK | OK | WARNINGS | OK | |||||||||
kunpeng2 | Linux (openEuler 22.03 LTS-SP1) / aarch64 | OK | ERROR | skipped | ||||||||||
To the developers/maintainers of the velociraptor package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/velociraptor.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. - See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host. |
Package: velociraptor |
Version: 1.17.0 |
Command: /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data velociraptor |
StartedAt: 2024-12-23 03:23:42 -0000 (Mon, 23 Dec 2024) |
EndedAt: 2024-12-23 03:24:57 -0000 (Mon, 23 Dec 2024) |
EllapsedTime: 75.0 seconds |
RetCode: 1 |
Status: ERROR |
PackageFile: None |
PackageFileSize: NA |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data velociraptor ### ############################################################################## ############################################################################## * checking for file ‘velociraptor/DESCRIPTION’ ... OK * preparing ‘velociraptor’: * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘velociraptor.Rmd’ using rmarkdown /home/biocbuild/.cache/R/basilisk/1.19.0/velociraptor/1.17.0/env/lib/python3.10/site-packages/anndata/utils.py:429: FutureWarning: Importing read_csv from `anndata` is deprecated. Import anndata.io.read_csv instead. warnings.warn(msg, FutureWarning) /home/biocbuild/.cache/R/basilisk/1.19.0/velociraptor/1.17.0/env/lib/python3.10/site-packages/anndata/utils.py:429: FutureWarning: Importing read_excel from `anndata` is deprecated. Import anndata.io.read_excel instead. warnings.warn(msg, FutureWarning) /home/biocbuild/.cache/R/basilisk/1.19.0/velociraptor/1.17.0/env/lib/python3.10/site-packages/anndata/utils.py:429: FutureWarning: Importing read_hdf from `anndata` is deprecated. Import anndata.io.read_hdf instead. warnings.warn(msg, FutureWarning) /home/biocbuild/.cache/R/basilisk/1.19.0/velociraptor/1.17.0/env/lib/python3.10/site-packages/anndata/utils.py:429: FutureWarning: Importing read_loom from `anndata` is deprecated. Import anndata.io.read_loom instead. warnings.warn(msg, FutureWarning) /home/biocbuild/.cache/R/basilisk/1.19.0/velociraptor/1.17.0/env/lib/python3.10/site-packages/anndata/utils.py:429: FutureWarning: Importing read_mtx from `anndata` is deprecated. Import anndata.io.read_mtx instead. warnings.warn(msg, FutureWarning) /home/biocbuild/.cache/R/basilisk/1.19.0/velociraptor/1.17.0/env/lib/python3.10/site-packages/anndata/utils.py:429: FutureWarning: Importing read_text from `anndata` is deprecated. Import anndata.io.read_text instead. warnings.warn(msg, FutureWarning) /home/biocbuild/.cache/R/basilisk/1.19.0/velociraptor/1.17.0/env/lib/python3.10/site-packages/anndata/utils.py:429: FutureWarning: Importing read_umi_tools from `anndata` is deprecated. Import anndata.io.read_umi_tools instead. warnings.warn(msg, FutureWarning) Quitting from lines 76-82 [unnamed-chunk-5] (velociraptor.Rmd) Error: processing vignette 'velociraptor.Rmd' failed with diagnostics: AttributeError: module 'scipy.linalg' has no attribute 'tril' Run `reticulate::py_last_error()` for details. --- failed re-building ‘velociraptor.Rmd’ SUMMARY: processing the following file failed: ‘velociraptor.Rmd’ Error: Vignette re-building failed. Execution halted