Multiple platform build/check report for BioC 3.21 - BUILD results for variancePartition on kjohnson3

Hostname	OS	Arch (*)	R version	Installed pkgs
nebbiolo1	Linux (Ubuntu 24.04.1 LTS)	x86_64	R Under development (unstable) (2025-01-20 r87609) -- "Unsuffered Consequences"	4609
palomino7	Windows Server 2022 Datacenter	x64	R Under development (unstable) (2025-01-21 r87610 ucrt) -- "Unsuffered Consequences"	4393
lconway	macOS 12.7.1 Monterey	x86_64	R Under development (unstable) (2025-01-20 r87609) -- "Unsuffered Consequences"	3839
kjohnson3	macOS 13.7.1 Ventura	arm64	R Under development (unstable) (2025-01-20 r87609) -- "Unsuffered Consequences"	3835
kunpeng2	Linux (openEuler 22.03 LTS-SP1)	aarch64	R Under development (unstable) (2024-11-24 r87369) -- "Unsuffered Consequences"	4408
Click on any hostname to see more info about the system (e.g. compilers) () as reported by 'uname -p', except on Windows and Mac OS X*

BUILD results for variancePartition on kjohnson3

To the developers/maintainers of the variancePartition package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/variancePartition.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: variancePartition

Version: 1.37.2

Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data variancePartition

StartedAt: 2025-01-23 16:55:32 -0500 (Thu, 23 Jan 2025)

EndedAt: 2025-01-23 16:56:12 -0500 (Thu, 23 Jan 2025)

EllapsedTime: 40.5 seconds

RetCode: 1

Status: ERROR

PackageFile: None

PackageFileSize: NA

Command output

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### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data variancePartition
###
##############################################################################
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* checking for file ‘variancePartition/DESCRIPTION’ ... OK
* preparing ‘variancePartition’:
* checking DESCRIPTION meta-information ... OK
* installing the package to process help pages
Loading required namespace: variancePartition
* saving partial Rd database
* creating vignettes ... ERROR
--- re-building ‘FAQ.Rmd’ using rmarkdown
--- finished re-building ‘FAQ.Rmd’

--- re-building ‘additional_visualization.Rmd’ using rmarkdown
2025-01-23 16:55:42.622 R[90933:366965108] XType: Using static font registry.
--- finished re-building ‘additional_visualization.Rmd’

--- re-building ‘dream.Rmd’ using rmarkdown

Quitting from lines 95-109 [preprocess] (dream.Rmd)
Error: processing vignette 'dream.Rmd' failed with diagnostics:
there is no package called 'edgeR'
--- failed re-building ‘dream.Rmd’

--- re-building ‘errors.Rmd’ using rmarkdown
--- finished re-building ‘errors.Rmd’

--- re-building ‘mvtests.Rmd’ using rmarkdown

Quitting from lines 79-95 [dream] (mvtests.Rmd)
Error: processing vignette 'mvtests.Rmd' failed with diagnostics:
there is no package called 'edgeR'
--- failed re-building ‘mvtests.Rmd’

--- re-building ‘rnd_effects.Rmd’ using rmarkdown
--- finished re-building ‘rnd_effects.Rmd’

--- re-building ‘variancePartition.Rmd’ using rmarkdown

Quitting from lines 489-518 [limma] (variancePartition.Rmd)
Error: processing vignette 'variancePartition.Rmd' failed with diagnostics:
there is no package called 'edgeR'
--- failed re-building ‘variancePartition.Rmd’

SUMMARY: processing the following files failed:
  ‘dream.Rmd’ ‘mvtests.Rmd’ ‘variancePartition.Rmd’

Error: Vignette re-building failed.
Execution halted