Back to Multiple platform build/check report for BioC 3.21: simplified long |
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This page was generated on 2024-12-23 11:41 -0500 (Mon, 23 Dec 2024).
Hostname | OS | Arch (*) | R version | Installed pkgs |
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nebbiolo1 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | R Under development (unstable) (2024-10-21 r87258) -- "Unsuffered Consequences" | 4754 |
palomino7 | Windows Server 2022 Datacenter | x64 | R Under development (unstable) (2024-10-26 r87273 ucrt) -- "Unsuffered Consequences" | 4472 |
lconway | macOS 12.7.1 Monterey | x86_64 | R Under development (unstable) (2024-11-20 r87352) -- "Unsuffered Consequences" | 4426 |
kjohnson3 | macOS 13.7.1 Ventura | arm64 | R Under development (unstable) (2024-11-20 r87352) -- "Unsuffered Consequences" | 4381 |
kunpeng2 | Linux (openEuler 22.03 LTS-SP1) | aarch64 | R Under development (unstable) (2024-11-24 r87369) -- "Unsuffered Consequences" | 4372 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
Package 2116/2274 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
ternarynet 1.51.0 (landing page) McCall N. Matthew
| nebbiolo1 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | ERROR | ERROR | skipped | |||||||||
palomino7 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | |||||||||
lconway | macOS 12.7.1 Monterey / x86_64 | ERROR | ERROR | skipped | skipped | |||||||||
kjohnson3 | macOS 13.7.1 Ventura / arm64 | ERROR | ERROR | skipped | skipped | |||||||||
kunpeng2 | Linux (openEuler 22.03 LTS-SP1) / aarch64 | ERROR | ERROR | skipped | ||||||||||
To the developers/maintainers of the ternarynet package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/ternarynet.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
Package: ternarynet |
Version: 1.51.0 |
Command: /home/biocbuild/bbs-3.21-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data ternarynet |
StartedAt: 2024-12-22 19:27:32 -0500 (Sun, 22 Dec 2024) |
EndedAt: 2024-12-22 19:27:34 -0500 (Sun, 22 Dec 2024) |
EllapsedTime: 2.0 seconds |
RetCode: 1 |
Status: ERROR |
PackageFile: None |
PackageFileSize: NA |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.21-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data ternarynet ### ############################################################################## ############################################################################## * checking for file ‘ternarynet/DESCRIPTION’ ... OK * preparing ‘ternarynet’: * checking DESCRIPTION meta-information ... OK * cleaning src * running ‘cleanup’ * installing the package to build vignettes ----------------------------------- * installing *source* package ‘ternarynet’ ... ** using staged installation ** libs using C compiler: ‘gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0’ using C++ compiler: ‘g++ (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0’ gcc -I"/home/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG -I/usr/local/include -DSTRICT_R_HEADERS=1 -fpic -g -O2 -Wall -c array.c -o array.o gcc -I"/home/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG -I/usr/local/include -DSTRICT_R_HEADERS=1 -fpic -g -O2 -Wall -c gn.c -o gn.o gn.c: In function ‘score’: gn.c:486: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 486 | #pragma omp parallel for | gn.c:493: warning: ignoring ‘#pragma omp atomic’ [-Wunknown-pragmas] 493 | #pragma omp atomic | gcc -I"/home/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG -I/usr/local/include -DSTRICT_R_HEADERS=1 -fpic -g -O2 -Wall -c gn_Rwrap.c -o gn_Rwrap.o gcc -I"/home/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG -I/usr/local/include -DSTRICT_R_HEADERS=1 -fpic -g -O2 -Wall -c init.c -o init.o g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG -I/usr/local/include -DSTRICT_R_HEADERS=1 -fpic -g -O2 -Wall -DR_NO_REMAP -c tnetfit.cc -o tnetfit.o tnetfit.cc: In function ‘SEXPREC* tnetfit(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)’: tnetfit.cc:35:32: error: ‘coerceVector’ was not declared in this scope; did you mean ‘Rf_coerceVector’? 35 | perturbationType = INTEGER(coerceVector(RperturbationType, INTSXP))[0]; | ^~~~~~~~~~~~ | Rf_coerceVector In file included from /home/biocbuild/bbs-3.21-bioc/R/include/Rdefines.h:41, from tnetfit.cc:12: tnetfit.cc:220:23: error: ‘allocVector’ was not declared in this scope; did you mean ‘Rf_allocVector’? 220 | PROTECT(Routput = allocVector(VECSXP, 14)); | ^~~~~~~~~~~ /home/biocbuild/bbs-3.21-bioc/R/include/Rinternals.h:388:36: note: in definition of macro ‘PROTECT’ 388 | #define PROTECT(s) Rf_protect(s) | ^ tnetfit.cc:311:33: error: ‘ScalarReal’ was not declared in this scope; did you mean ‘Rf_ScalarReal’? 311 | SET_VECTOR_ELT(Routput, 10, ScalarReal(newScore)); | ^~~~~~~~~~ | Rf_ScalarReal tnetfit.cc:315:33: error: ‘ScalarInteger’ was not declared in this scope; did you mean ‘Rf_ScalarInteger’? 315 | SET_VECTOR_ELT(Routput, 12, ScalarInteger(stage_count)); | ^~~~~~~~~~~~~ | Rf_ScalarInteger tnetfit.cc:320:29: error: ‘mkChar’ was not declared in this scope 320 | SET_STRING_ELT(Rnames,0,mkChar("degreeObj")); | ^~~~~~ tnetfit.cc:334:5: error: ‘setAttrib’ was not declared in this scope; did you mean ‘Rf_setAttrib’? 334 | setAttrib(Routput, R_NamesSymbol, Rnames); | ^~~~~~~~~ | Rf_setAttrib tnetfit.cc:73:39: warning: unused variable ‘tempi’ [-Wunused-variable] 73 | int nOutcomes=3, l0, stage_count, tempi, jtrans, nTransition; | ^~~~~ make: *** [/home/biocbuild/bbs-3.21-bioc/R/etc/Makeconf:200: tnetfit.o] Error 1 ERROR: compilation failed for package ‘ternarynet’ * removing ‘/tmp/Rtmp38jUBq/Rinst179e3d920d3b8/ternarynet’ ----------------------------------- ERROR: package installation failed