Back to Multiple platform build/check report for BioC 3.22:   simplified   long
ABCDEFGHIJKLMNOPQR[S]TUVWXYZ

This page was generated on 2025-08-06 13:53 -0400 (Wed, 06 Aug 2025).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 24.04.2 LTS)x86_644.5.1 (2025-06-13) -- "Great Square Root" 4813
palomino8Windows Server 2022 Datacenterx644.5.1 (2025-06-13 ucrt) -- "Great Square Root" 4550
lconwaymacOS 12.7.1 Montereyx86_644.5.1 (2025-06-13) -- "Great Square Root" 4592
kjohnson3macOS 13.7.1 Venturaarm644.5.1 Patched (2025-06-14 r88325) -- "Great Square Root" 4534
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 2036/2315HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
spatialDE 1.15.1  (landing page)
Gabriele Sales
Snapshot Date: 2025-08-05 13:25 -0400 (Tue, 05 Aug 2025)
git_url: https://git.bioconductor.org/packages/spatialDE
git_branch: devel
git_last_commit: 361ffda
git_last_commit_date: 2025-04-16 02:22:34 -0400 (Wed, 16 Apr 2025)
nebbiolo2Linux (Ubuntu 24.04.2 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
palomino8Windows Server 2022 Datacenter / x64  OK    ERROR  skippedskipped
lconwaymacOS 12.7.1 Monterey / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published
kjohnson3macOS 13.7.1 Ventura / arm64  OK    OK    OK    OK  UNNEEDED, same version is already published

CHECK results for spatialDE on nebbiolo2

To the developers/maintainers of the spatialDE package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/spatialDE.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: spatialDE
Version: 1.15.1
Command: /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD check --install=check:spatialDE.install-out.txt --library=/home/biocbuild/bbs-3.22-bioc/R/site-library --timings spatialDE_1.15.1.tar.gz
StartedAt: 2025-08-06 03:05:29 -0400 (Wed, 06 Aug 2025)
EndedAt: 2025-08-06 03:10:43 -0400 (Wed, 06 Aug 2025)
EllapsedTime: 314.2 seconds
RetCode: 0
Status:   OK  
CheckDir: spatialDE.Rcheck
Warnings: 0

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD check --install=check:spatialDE.install-out.txt --library=/home/biocbuild/bbs-3.22-bioc/R/site-library --timings spatialDE_1.15.1.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/home/biocbuild/bbs-3.22-bioc/meat/spatialDE.Rcheck’
* using R version 4.5.1 (2025-06-13)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
    GNU Fortran (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
* running under: Ubuntu 24.04.2 LTS
* using session charset: UTF-8
* checking for file ‘spatialDE/DESCRIPTION’ ... OK
* this is package ‘spatialDE’ version ‘1.15.1’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘spatialDE’ can be installed ... NOTE
Found the following notes/warnings:
  Non-staged installation was used
See ‘/home/biocbuild/bbs-3.22-bioc/meat/spatialDE.Rcheck/00install.out’ for details.
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... NOTE
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  mockSVG.Rd: SpatialExperiment-class
  modelSearch.Rd: SpatialExperiment-class
  multiGenePlots.Rd: SpatialExperiment-class
  spatialDE.Rd: SpatialExperiment-class
  spatialPatterns.Rd: SpatialExperiment-class
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking line endings in shell scripts ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
                   user system elapsed
spatial_patterns 12.858  6.988   9.925
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* DONE

Status: 2 NOTEs
See
  ‘/home/biocbuild/bbs-3.22-bioc/meat/spatialDE.Rcheck/00check.log’
for details.

Installation output

spatialDE.Rcheck/00install.out

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD INSTALL spatialDE
###
##############################################################################
##############################################################################


* installing to library ‘/home/biocbuild/bbs-3.22-bioc/R/site-library’
* installing *source* package ‘spatialDE’ ...
** this is package ‘spatialDE’ version ‘1.15.1’
** using non-staged installation via StagedInstall field
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (spatialDE)

Tests output

spatialDE.Rcheck/tests/testthat.Rout


R version 4.5.1 (2025-06-13) -- "Great Square Root"
Copyright (C) 2025 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> library(testthat)
> library(spatialDE)
> 
> test_check("spatialDE")
Loading required package: SingleCellExperiment
Loading required package: SummarizedExperiment
Loading required package: MatrixGenerics
Loading required package: matrixStats

Attaching package: 'MatrixGenerics'

The following objects are masked from 'package:matrixStats':

    colAlls, colAnyNAs, colAnys, colAvgsPerRowSet, colCollapse,
    colCounts, colCummaxs, colCummins, colCumprods, colCumsums,
    colDiffs, colIQRDiffs, colIQRs, colLogSumExps, colMadDiffs,
    colMads, colMaxs, colMeans2, colMedians, colMins, colOrderStats,
    colProds, colQuantiles, colRanges, colRanks, colSdDiffs, colSds,
    colSums2, colTabulates, colVarDiffs, colVars, colWeightedMads,
    colWeightedMeans, colWeightedMedians, colWeightedSds,
    colWeightedVars, rowAlls, rowAnyNAs, rowAnys, rowAvgsPerColSet,
    rowCollapse, rowCounts, rowCummaxs, rowCummins, rowCumprods,
    rowCumsums, rowDiffs, rowIQRDiffs, rowIQRs, rowLogSumExps,
    rowMadDiffs, rowMads, rowMaxs, rowMeans2, rowMedians, rowMins,
    rowOrderStats, rowProds, rowQuantiles, rowRanges, rowRanks,
    rowSdDiffs, rowSds, rowSums2, rowTabulates, rowVarDiffs, rowVars,
    rowWeightedMads, rowWeightedMeans, rowWeightedMedians,
    rowWeightedSds, rowWeightedVars

Loading required package: GenomicRanges
Loading required package: stats4
Loading required package: BiocGenerics
Loading required package: generics

Attaching package: 'generics'

The following objects are masked from 'package:base':

    as.difftime, as.factor, as.ordered, intersect, is.element, setdiff,
    setequal, union


Attaching package: 'BiocGenerics'

The following objects are masked from 'package:stats':

    IQR, mad, sd, var, xtabs

The following objects are masked from 'package:base':

    Filter, Find, Map, Position, Reduce, anyDuplicated, aperm, append,
    as.data.frame, basename, cbind, colnames, dirname, do.call,
    duplicated, eval, evalq, get, grep, grepl, is.unsorted, lapply,
    mapply, match, mget, order, paste, pmax, pmax.int, pmin, pmin.int,
    rank, rbind, rownames, sapply, saveRDS, table, tapply, unique,
    unsplit, which.max, which.min

Loading required package: S4Vectors

Attaching package: 'S4Vectors'

The following object is masked from 'package:utils':

    findMatches

The following objects are masked from 'package:base':

    I, expand.grid, unname

Loading required package: IRanges
Loading required package: Seqinfo
Loading required package: Biobase
Welcome to Bioconductor

    Vignettes contain introductory material; view with
    'browseVignettes()'. To cite Bioconductor, see
    'citation("Biobase")', and for packages 'citation("pkgname")'.


Attaching package: 'Biobase'

The following object is masked from 'package:MatrixGenerics':

    rowMedians

The following objects are masked from 'package:matrixStats':

    anyMissing, rowMedians


Models:   0%|          | 0/10 [00:00<?, ?it/s]

  0%|          | 0/100 [00:00<?, ?it/s]

 49%|████▉     | 49/100 [00:00<00:00, 479.01it/s]

 97%|█████████▋| 97/100 [00:00<00:00, 467.51it/s]

                                                 
Models:  10%|█         | 1/10 [00:00<00:01,  4.63it/s]

  0%|          | 0/100 [00:00<?, ?it/s]

 36%|███▌      | 36/100 [00:00<00:00, 359.22it/s]

 72%|███████▏  | 72/100 [00:00<00:00, 345.34it/s]

                                                 
Models:  20%|██        | 2/10 [00:00<00:02,  3.81it/s]

  0%|          | 0/100 [00:00<?, ?it/s]

 34%|███▍      | 34/100 [00:00<00:00, 328.90it/s]

 68%|██████▊   | 68/100 [00:00<00:00, 333.28it/s]

                                                 
Models:  30%|███       | 3/10 [00:00<00:01,  3.54it/s]

  0%|          | 0/100 [00:00<?, ?it/s]

 32%|███▏      | 32/100 [00:00<00:00, 319.01it/s]

 64%|██████▍   | 64/100 [00:00<00:00, 313.82it/s]

 96%|█████████▌| 96/100 [00:00<00:00, 314.62it/s]

                                                 
Models:  40%|████      | 4/10 [00:01<00:01,  3.36it/s]

  0%|          | 0/100 [00:00<?, ?it/s]

 32%|███▏      | 32/100 [00:00<00:00, 308.86it/s]

 63%|██████▎   | 63/100 [00:00<00:00, 307.96it/s]

 95%|█████████▌| 95/100 [00:00<00:00, 309.87it/s]

                                                 
Models:  50%|█████     | 5/10 [00:01<00:01,  3.25it/s]

  0%|          | 0/100 [00:00<?, ?it/s]

 32%|███▏      | 32/100 [00:00<00:00, 308.91it/s]

 64%|██████▍   | 64/100 [00:00<00:00, 312.96it/s]

 96%|█████████▌| 96/100 [00:00<00:00, 311.72it/s]

                                                 
Models:  60%|██████    | 6/10 [00:01<00:01,  3.19it/s]

  0%|          | 0/100 [00:00<?, ?it/s]

 32%|███▏      | 32/100 [00:00<00:00, 311.87it/s]

 64%|██████▍   | 64/100 [00:00<00:00, 297.28it/s]

 96%|█████████▌| 96/100 [00:00<00:00, 303.62it/s]

                                                 
Models:  70%|███████   | 7/10 [00:02<00:00,  3.13it/s]

  0%|          | 0/100 [00:00<?, ?it/s]

 32%|███▏      | 32/100 [00:00<00:00, 315.06it/s]

 64%|██████▍   | 64/100 [00:00<00:00, 313.58it/s]

 97%|█████████▋| 97/100 [00:00<00:00, 317.89it/s]

                                                 
Models:  80%|████████  | 8/10 [00:02<00:00,  3.13it/s]

  0%|          | 0/100 [00:00<?, ?it/s]

 34%|███▍      | 34/100 [00:00<00:00, 332.85it/s]

 68%|██████▊   | 68/100 [00:00<00:00, 281.87it/s]

                                                 
Models:  90%|█████████ | 9/10 [00:02<00:00,  3.10it/s]

  0%|          | 0/100 [00:00<?, ?it/s]

 37%|███▋      | 37/100 [00:00<00:00, 368.62it/s]

 74%|███████▍  | 74/100 [00:00<00:00, 355.28it/s]

                                                 
Models: 100%|██████████| 10/10 [00:03<00:00,  3.22it/s]
Models: 100%|██████████| 10/10 [00:03<00:00,  3.27it/s]

Models:   0%|          | 0/10 [00:00<?, ?it/s]

  0%|          | 0/100 [00:00<?, ?it/s]

 50%|█████     | 50/100 [00:00<00:00, 489.04it/s]

 99%|█████████▉| 99/100 [00:00<00:00, 484.36it/s]

                                                 
Models:  10%|█         | 1/10 [00:00<00:01,  4.79it/s]

  0%|          | 0/100 [00:00<?, ?it/s]

 40%|████      | 40/100 [00:00<00:00, 395.21it/s]

 80%|████████  | 80/100 [00:00<00:00, 371.82it/s]

                                                 
Models:  20%|██        | 2/10 [00:00<00:01,  4.05it/s]

  0%|          | 0/100 [00:00<?, ?it/s]

 37%|███▋      | 37/100 [00:00<00:00, 364.04it/s]

 74%|███████▍  | 74/100 [00:00<00:00, 349.13it/s]

                                                 
Models:  30%|███       | 3/10 [00:00<00:01,  3.72it/s]

  0%|          | 0/100 [00:00<?, ?it/s]

 35%|███▌      | 35/100 [00:00<00:00, 349.96it/s]

 70%|███████   | 70/100 [00:00<00:00, 332.68it/s]

                                                 
Models:  40%|████      | 4/10 [00:01<00:01,  3.53it/s]

  0%|          | 0/100 [00:00<?, ?it/s]

 35%|███▌      | 35/100 [00:00<00:00, 347.93it/s]

 70%|███████   | 70/100 [00:00<00:00, 326.08it/s]

                                                 
Models:  50%|█████     | 5/10 [00:01<00:01,  3.42it/s]

  0%|          | 0/100 [00:00<?, ?it/s]

 37%|███▋      | 37/100 [00:00<00:00, 367.12it/s]

 74%|███████▍  | 74/100 [00:00<00:00, 347.67it/s]

                                                 
Models:  60%|██████    | 6/10 [00:01<00:01,  3.42it/s]

  0%|          | 0/100 [00:00<?, ?it/s]

 37%|███▋      | 37/100 [00:00<00:00, 359.08it/s]

 73%|███████▎  | 73/100 [00:00<00:00, 345.23it/s]

                                                 
Models:  70%|███████   | 7/10 [00:01<00:00,  3.42it/s]

  0%|          | 0/100 [00:00<?, ?it/s]

 36%|███▌      | 36/100 [00:00<00:00, 357.20it/s]

 72%|███████▏  | 72/100 [00:00<00:00, 338.67it/s]

                                                 
Models:  80%|████████  | 8/10 [00:02<00:00,  3.40it/s]

  0%|          | 0/100 [00:00<?, ?it/s]

 36%|███▌      | 36/100 [00:00<00:00, 357.93it/s]

 72%|███████▏  | 72/100 [00:00<00:00, 341.68it/s]

                                                 
Models:  90%|█████████ | 9/10 [00:02<00:00,  3.41it/s]

  0%|          | 0/100 [00:00<?, ?it/s]

 38%|███▊      | 38/100 [00:00<00:00, 374.60it/s]

 76%|███████▌  | 76/100 [00:00<00:00, 357.54it/s]

                                                 
Models: 100%|██████████| 10/10 [00:02<00:00,  3.45it/s]
Models: 100%|██████████| 10/10 [00:02<00:00,  3.51it/s]
/home/biocbuild/.cache/R/basilisk/1.21.5/spatialDE/1.15.1/env/lib/python3.11/site-packages/pandas/core/internals/blocks.py:351: RuntimeWarning: invalid value encountered in log
  result = func(self.values, **kwargs)

Models:   0%|          | 0/10 [00:00<?, ?it/s]

  0%|          | 0/100 [00:00<?, ?it/s]

 48%|████▊     | 48/100 [00:00<00:00, 475.99it/s]

100%|██████████| 100/100 [00:00<00:00, 497.80it/s]

                                                  
Models:  10%|█         | 1/10 [00:00<00:01,  4.89it/s]

  0%|          | 0/100 [00:00<?, ?it/s]

 40%|████      | 40/100 [00:00<00:00, 389.42it/s]

 79%|███████▉  | 79/100 [00:00<00:00, 369.35it/s]

                                                 
Models:  20%|██        | 2/10 [00:00<00:01,  4.09it/s]

  0%|          | 0/100 [00:00<?, ?it/s]

 37%|███▋      | 37/100 [00:00<00:00, 368.03it/s]

 74%|███████▍  | 74/100 [00:00<00:00, 353.35it/s]

                                                 
Models:  30%|███       | 3/10 [00:00<00:01,  3.80it/s]

  0%|          | 0/100 [00:00<?, ?it/s]

 36%|███▌      | 36/100 [00:00<00:00, 351.95it/s]

 72%|███████▏  | 72/100 [00:00<00:00, 335.17it/s]

                                                 
Models:  40%|████      | 4/10 [00:01<00:01,  3.60it/s]

  0%|          | 0/100 [00:00<?, ?it/s]

 35%|███▌      | 35/100 [00:00<00:00, 345.05it/s]

 70%|███████   | 70/100 [00:00<00:00, 330.12it/s]

                                                 
Models:  50%|█████     | 5/10 [00:01<00:01,  3.49it/s]

  0%|          | 0/100 [00:00<?, ?it/s]

 35%|███▌      | 35/100 [00:00<00:00, 342.80it/s]

 70%|███████   | 70/100 [00:00<00:00, 325.43it/s]

                                                 
Models:  60%|██████    | 6/10 [00:01<00:01,  3.41it/s]

  0%|          | 0/100 [00:00<?, ?it/s]

 35%|███▌      | 35/100 [00:00<00:00, 348.31it/s]

 70%|███████   | 70/100 [00:00<00:00, 341.39it/s]

                                                 
Models:  70%|███████   | 7/10 [00:01<00:00,  3.40it/s]

  0%|          | 0/100 [00:00<?, ?it/s]

 36%|███▌      | 36/100 [00:00<00:00, 352.69it/s]

 72%|███████▏  | 72/100 [00:00<00:00, 336.43it/s]

                                                 
Models:  80%|████████  | 8/10 [00:02<00:00,  3.39it/s]

  0%|          | 0/100 [00:00<?, ?it/s]

 38%|███▊      | 38/100 [00:00<00:00, 371.34it/s]

 76%|███████▌  | 76/100 [00:00<00:00, 355.29it/s]

                                                 
Models:  90%|█████████ | 9/10 [00:02<00:00,  3.43it/s]

  0%|          | 0/100 [00:00<?, ?it/s]

 39%|███▉      | 39/100 [00:00<00:00, 385.44it/s]

 78%|███████▊  | 78/100 [00:00<00:00, 375.24it/s]

                                                 
Models: 100%|██████████| 10/10 [00:02<00:00,  3.52it/s]
Models: 100%|██████████| 10/10 [00:02<00:00,  3.55it/s]

Models:   0%|          | 0/10 [00:00<?, ?it/s]

  0%|          | 0/100 [00:00<?, ?it/s]

 48%|████▊     | 48/100 [00:00<00:00, 476.33it/s]

100%|██████████| 100/100 [00:00<00:00, 499.47it/s]

                                                  
Models:  10%|█         | 1/10 [00:00<00:01,  4.91it/s]

  0%|          | 0/100 [00:00<?, ?it/s]

 41%|████      | 41/100 [00:00<00:00, 403.12it/s]

 82%|████████▏ | 82/100 [00:00<00:00, 383.02it/s]

                                                 
Models:  20%|██        | 2/10 [00:00<00:01,  4.19it/s]

  0%|          | 0/100 [00:00<?, ?it/s]

 38%|███▊      | 38/100 [00:00<00:00, 373.79it/s]

 76%|███████▌  | 76/100 [00:00<00:00, 363.22it/s]

                                                 
Models:  30%|███       | 3/10 [00:00<00:01,  3.89it/s]

  0%|          | 0/100 [00:00<?, ?it/s]

 36%|███▌      | 36/100 [00:00<00:00, 349.30it/s]

 71%|███████   | 71/100 [00:00<00:00, 342.11it/s]

                                                 
Models:  40%|████      | 4/10 [00:01<00:01,  3.67it/s]

  0%|          | 0/100 [00:00<?, ?it/s]

 36%|███▌      | 36/100 [00:00<00:00, 353.05it/s]

 72%|███████▏  | 72/100 [00:00<00:00, 340.46it/s]

                                                 
Models:  50%|█████     | 5/10 [00:01<00:01,  3.56it/s]

  0%|          | 0/100 [00:00<?, ?it/s]

 35%|███▌      | 35/100 [00:00<00:00, 345.53it/s]

 70%|███████   | 70/100 [00:00<00:00, 332.48it/s]

                                                 
Models:  60%|██████    | 6/10 [00:01<00:01,  3.49it/s]

  0%|          | 0/100 [00:00<?, ?it/s]

 36%|███▌      | 36/100 [00:00<00:00, 351.02it/s]

 72%|███████▏  | 72/100 [00:00<00:00, 341.87it/s]

                                                 
Models:  70%|███████   | 7/10 [00:01<00:00,  3.46it/s]

  0%|          | 0/100 [00:00<?, ?it/s]

 37%|███▋      | 37/100 [00:00<00:00, 361.63it/s]

 74%|███████▍  | 74/100 [00:00<00:00, 345.90it/s]

                                                 
Models:  80%|████████  | 8/10 [00:02<00:00,  3.45it/s]

  0%|          | 0/100 [00:00<?, ?it/s]

 37%|███▋      | 37/100 [00:00<00:00, 368.55it/s]

 74%|███████▍  | 74/100 [00:00<00:00, 354.45it/s]

                                                 
Models:  90%|█████████ | 9/10 [00:02<00:00,  3.47it/s]

  0%|          | 0/100 [00:00<?, ?it/s]

 38%|███▊      | 38/100 [00:00<00:00, 379.70it/s]

 76%|███████▌  | 76/100 [00:00<00:00, 376.60it/s]

                                                 
Models: 100%|██████████| 10/10 [00:02<00:00,  3.54it/s]
Models: 100%|██████████| 10/10 [00:02<00:00,  3.60it/s]

Models:   0%|          | 0/10 [00:00<?, ?it/s]

  0%|          | 0/100 [00:00<?, ?it/s]

 49%|████▉     | 49/100 [00:00<00:00, 488.01it/s]

                                                 
Models:  10%|█         | 1/10 [00:00<00:01,  5.03it/s]

  0%|          | 0/100 [00:00<?, ?it/s]

 41%|████      | 41/100 [00:00<00:00, 405.95it/s]

 82%|████████▏ | 82/100 [00:00<00:00, 382.48it/s]

                                                 
Models:  20%|██        | 2/10 [00:00<00:01,  4.24it/s]

  0%|          | 0/100 [00:00<?, ?it/s]

 38%|███▊      | 38/100 [00:00<00:00, 372.56it/s]

 76%|███████▌  | 76/100 [00:00<00:00, 355.40it/s]

                                                 
Models:  30%|███       | 3/10 [00:00<00:01,  3.89it/s]

  0%|          | 0/100 [00:00<?, ?it/s]

 36%|███▌      | 36/100 [00:00<00:00, 354.11it/s]

 72%|███████▏  | 72/100 [00:00<00:00, 345.45it/s]

                                                 
Models:  40%|████      | 4/10 [00:01<00:01,  3.69it/s]

  0%|          | 0/100 [00:00<?, ?it/s]

 36%|███▌      | 36/100 [00:00<00:00, 351.85it/s]

 72%|███████▏  | 72/100 [00:00<00:00, 338.51it/s]

                                                 
Models:  50%|█████     | 5/10 [00:01<00:01,  3.57it/s]

  0%|          | 0/100 [00:00<?, ?it/s]

 35%|███▌      | 35/100 [00:00<00:00, 349.77it/s]

 70%|███████   | 70/100 [00:00<00:00, 337.82it/s]

                                                 
Models:  60%|██████    | 6/10 [00:01<00:01,  3.49it/s]

  0%|          | 0/100 [00:00<?, ?it/s]

 37%|███▋      | 37/100 [00:00<00:00, 359.89it/s]

 73%|███████▎  | 73/100 [00:00<00:00, 347.35it/s]

                                                 
Models:  70%|███████   | 7/10 [00:01<00:00,  3.48it/s]

  0%|          | 0/100 [00:00<?, ?it/s]

 38%|███▊      | 38/100 [00:00<00:00, 371.33it/s]

 76%|███████▌  | 76/100 [00:00<00:00, 354.26it/s]

                                                 
Models:  80%|████████  | 8/10 [00:02<00:00,  3.50it/s]

  0%|          | 0/100 [00:00<?, ?it/s]

 39%|███▉      | 39/100 [00:00<00:00, 380.17it/s]

 78%|███████▊  | 78/100 [00:00<00:00, 357.37it/s]

                                                 
Models:  90%|█████████ | 9/10 [00:02<00:00,  3.52it/s]

  0%|          | 0/100 [00:00<?, ?it/s]

 40%|████      | 40/100 [00:00<00:00, 391.99it/s]

 80%|████████  | 80/100 [00:00<00:00, 382.45it/s]

                                                 
Models: 100%|██████████| 10/10 [00:02<00:00,  3.60it/s]
Models: 100%|██████████| 10/10 [00:02<00:00,  3.64it/s]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 29 ]
> 
> proc.time()
   user  system elapsed 
 41.717   7.397  41.322

Example timings

spatialDE.Rcheck/spatialDE-Ex.timings

nameusersystemelapsed
FSV_sig2.6131.3322.916
mockSVG0.2190.0160.235
modelSearch1.2310.6201.027
model_search1.0430.5920.827
multiGenePlots1.9130.4171.807
regress_out0.0870.0080.094
run0.5830.2630.508
spatialDE0.6250.3430.532
spatialPatterns0.7500.5470.666
spatial_patterns12.858 6.988 9.925
stabilize0.0500.0400.044