Back to Multiple platform build/check report for BioC 3.21: simplified long |
|
This page was generated on 2024-12-24 11:47 -0500 (Tue, 24 Dec 2024).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
nebbiolo1 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | R Under development (unstable) (2024-10-21 r87258) -- "Unsuffered Consequences" | 4754 |
palomino7 | Windows Server 2022 Datacenter | x64 | R Under development (unstable) (2024-10-26 r87273 ucrt) -- "Unsuffered Consequences" | 4472 |
lconway | macOS 12.7.1 Monterey | x86_64 | R Under development (unstable) (2024-11-20 r87352) -- "Unsuffered Consequences" | 4426 |
kjohnson3 | macOS 13.7.1 Ventura | arm64 | R Under development (unstable) (2024-11-20 r87352) -- "Unsuffered Consequences" | 4381 |
kunpeng2 | Linux (openEuler 22.03 LTS-SP1) | aarch64 | R Under development (unstable) (2024-11-24 r87369) -- "Unsuffered Consequences" | 4373 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
Package 1971/2274 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
slalom 1.29.0 (landing page) Davis McCarthy
| nebbiolo1 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | OK | OK | WARNINGS | |||||||||
palomino7 | Windows Server 2022 Datacenter / x64 | OK | OK | WARNINGS | OK | |||||||||
lconway | macOS 12.7.1 Monterey / x86_64 | ERROR | ERROR | skipped | skipped | |||||||||
kjohnson3 | macOS 13.7.1 Ventura / arm64 | ERROR | ERROR | skipped | skipped | |||||||||
kunpeng2 | Linux (openEuler 22.03 LTS-SP1) / aarch64 | OK | OK | WARNINGS | ||||||||||
To the developers/maintainers of the slalom package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/slalom.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. - See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host. |
Package: slalom |
Version: 1.29.0 |
Command: /home/biocbuild/R/R/bin/R CMD INSTALL slalom |
StartedAt: 2024-12-23 20:25:57 -0000 (Mon, 23 Dec 2024) |
EndedAt: 2024-12-23 20:27:17 -0000 (Mon, 23 Dec 2024) |
EllapsedTime: 80.3 seconds |
RetCode: 0 |
Status: OK |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/R/R/bin/R CMD INSTALL slalom ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library’ * installing *source* package ‘slalom’ ... ** using staged installation ** libs using C++ compiler: ‘aarch64-unknown-linux-gnu-g++ (GCC) 14.2.0’ /opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-g++ -std=gnu++17 -I"/home/biocbuild/R/R/include" -DNDEBUG -I'/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/Rcpp/include' -I'/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/RcppArmadillo/include' -I'/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/BH/include' -I/usr/local/include -fPIC -g -O2 -Wall -Werror=format-security -DR_NO_REMAP -c RcppExports.cpp -o RcppExports.o /opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-g++ -std=gnu++17 -I"/home/biocbuild/R/R/include" -DNDEBUG -I'/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/Rcpp/include' -I'/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/RcppArmadillo/include' -I'/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/BH/include' -I/usr/local/include -fPIC -g -O2 -Wall -Werror=format-security -DR_NO_REMAP -c slalom-classes.cpp -o slalom-classes.o slalom-classes.cpp: In member function ‘void SlalomModel::train()’: slalom-classes.cpp:223:20: warning: unused variable ‘meanerr’ [-Wunused-variable] 223 | double meanerr = arma::mean(error); | ^~~~~~~ slalom-classes.cpp:202:12: warning: unused variable ‘meanerr’ [-Wunused-variable] 202 | double meanerr = arma::mean(error); | ^~~~~~~ slalom-classes.cpp: In member function ‘void SlalomModel::update()’: slalom-classes.cpp:262:28: warning: ‘void std::random_shuffle(_RAIter, _RAIter, _Generator&&) [with _RAIter = unsigned int*; _Generator = int (&)(int)]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 262 | std::random_shuffle(kunfix.begin(), kunfix.end(), randWrapper); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /opt/ohpc/pub/compiler/gcc/14.2.0/include/c++/14.2.0/algorithm:61, from /home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/Rcpp/include/RcppCommon.h:65, from /home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:25, from /home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/RcppArmadillo/include/RcppArmadillo.h:29, from slalom-classes.cpp:10: /opt/ohpc/pub/compiler/gcc/14.2.0/include/c++/14.2.0/bits/stl_algo.h:4530:5: note: declared here 4530 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last, | ^~~~~~~~~~~~~~ slalom-classes.cpp: In member function ‘void SlalomModel::updateEpsilon()’: slalom-classes.cpp:431:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare] 431 | for (int i = 0; i < this->epsilon_E1.n_elem; i++) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~ /opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-g++ -std=gnu++17 -shared -L/home/biocbuild/R/R/lib -L/usr/local/lib -o slalom.so RcppExports.o slalom-classes.o -lopenblas -lgfortran -lm -L/home/biocbuild/R/R/lib -lR installing to /home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/00LOCK-slalom/00new/slalom/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (slalom)