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This page was generated on 2025-11-05 11:32 -0500 (Wed, 05 Nov 2025).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 24.04.3 LTS)x86_64R Under development (unstable) (2025-10-20 r88955) -- "Unsuffered Consequences" 4818
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 1966/2323HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
shiny.gosling 1.7.0  (landing page)
Appsilon
Snapshot Date: 2025-11-04 13:40 -0500 (Tue, 04 Nov 2025)
git_url: https://git.bioconductor.org/packages/shiny.gosling
git_branch: devel
git_last_commit: 7ae0eab
git_last_commit_date: 2025-10-29 11:26:43 -0500 (Wed, 29 Oct 2025)
nebbiolo1Linux (Ubuntu 24.04.3 LTS) / x86_64  OK    ERROR  skipped

BUILD results for shiny.gosling on nebbiolo1

To the developers/maintainers of the shiny.gosling package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/shiny.gosling.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: shiny.gosling
Version: 1.7.0
Command: /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data shiny.gosling
StartedAt: 2025-11-04 19:57:28 -0500 (Tue, 04 Nov 2025)
EndedAt: 2025-11-04 19:57:54 -0500 (Tue, 04 Nov 2025)
EllapsedTime: 26.0 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data shiny.gosling
###
##############################################################################
##############################################################################


* checking for file ‘shiny.gosling/DESCRIPTION’ ... OK
* preparing ‘shiny.gosling’:
* checking DESCRIPTION meta-information ... OK
* installing the package (it is needed to build vignettes)
* creating vignettes ... ERROR
--- re-building ‘GRanges.Rmd’ using rmarkdown
trying URL 'https://rb.gy/7y3fx'

Quitting from GRanges.Rmd:32-47 [reading-data]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `download.file()`:
! cannot open URL 'https://rb.gy/7y3fx'
---
Backtrace:
    ▆
 1. └─utils::download.file(...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'GRanges.Rmd' failed with diagnostics:
cannot open URL 'https://rb.gy/7y3fx'
--- failed re-building ‘GRanges.Rmd’

--- re-building ‘VCF.Rmd’ using rmarkdown
--- finished re-building ‘VCF.Rmd’

--- re-building ‘intro.Rmd’ using rmarkdown
--- finished re-building ‘intro.Rmd’

--- re-building ‘lineChart.Rmd’ using rmarkdown
--- finished re-building ‘lineChart.Rmd’

--- re-building ‘textAnnotation.Rmd’ using rmarkdown
--- finished re-building ‘textAnnotation.Rmd’

SUMMARY: processing the following file failed:
  ‘GRanges.Rmd’

Error: Vignette re-building failed.
Execution halted