Vincent Carey
| Snapshot Date: 2024-11-24 13:40 -0500 (Sun, 24 Nov 2024) |
| git_url: https://git.bioconductor.org/packages/rhdf5client |
| git_branch: devel |
| git_last_commit: 65b8c5d |
| git_last_commit_date: 2024-10-29 10:23:22 -0500 (Tue, 29 Oct 2024) |
| Back to Multiple platform build/check report for BioC 3.21: simplified long |
|
This page was generated on 2024-11-25 11:38 -0500 (Mon, 25 Nov 2024).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | R Under development (unstable) (2024-10-21 r87258) -- "Unsuffered Consequences" | 4748 |
| palomino7 | Windows Server 2022 Datacenter | x64 | R Under development (unstable) (2024-10-26 r87273 ucrt) -- "Unsuffered Consequences" | 4459 |
| lconway | macOS 12.7.1 Monterey | x86_64 | R Under development (unstable) (2024-11-20 r87352) -- "Unsuffered Consequences" | 4349 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 1728/2272 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| rhdf5client 1.29.0 (landing page) Vincent Carey
| nebbiolo1 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | OK | OK | OK | | ||||||||
| palomino7 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | | ||||||||
| lconway | macOS 12.7.1 Monterey / x86_64 | OK | OK | OK | OK | | ||||||||
|
To the developers/maintainers of the rhdf5client package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/rhdf5client.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: rhdf5client |
| Version: 1.29.0 |
| Command: rm -rf rhdf5client.buildbin-libdir && mkdir rhdf5client.buildbin-libdir && E:\biocbuild\bbs-3.21-bioc\R\bin\R.exe CMD INSTALL --build --library=rhdf5client.buildbin-libdir rhdf5client_1.29.0.tar.gz |
| StartedAt: 2024-11-25 07:46:40 -0500 (Mon, 25 Nov 2024) |
| EndedAt: 2024-11-25 07:47:43 -0500 (Mon, 25 Nov 2024) |
| EllapsedTime: 63.2 seconds |
| RetCode: 0 |
| Status: OK |
| PackageFile: rhdf5client_1.29.0.zip |
| PackageFileSize: 989.4 KiB |
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### Running command:
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### rm -rf rhdf5client.buildbin-libdir && mkdir rhdf5client.buildbin-libdir && E:\biocbuild\bbs-3.21-bioc\R\bin\R.exe CMD INSTALL --build --library=rhdf5client.buildbin-libdir rhdf5client_1.29.0.tar.gz
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* installing *source* package 'rhdf5client' ...
** using staged installation
** libs
using C compiler: 'gcc.exe (GCC) 13.3.0'
gcc -I"E:/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c extract.c -o extract.o
extract.c: In function 'extractBin':
extract.c:101:52: warning: 'rip' may be used uninitialized [-Wmaybe-uninitialized]
101 | A[ia] = (Rf_isReal(resvec_sexp) ? rdp[ib] : rip[ib]);
| ^
extract.c:89:8: note: 'rip' was declared here
89 | int *rip;
| ^~~
extract.c:101:42: warning: 'rdp' may be used uninitialized [-Wmaybe-uninitialized]
101 | A[ia] = (Rf_isReal(resvec_sexp) ? rdp[ib] : rip[ib]);
| ^
extract.c:90:11: note: 'rdp' was declared here
90 | double *rdp;
| ^~~
gcc -shared -s -static-libgcc -o rhdf5client.dll tmp.def extract.o -LC:/rtools44/x86_64-w64-mingw32.static.posix/lib/x64 -LC:/rtools44/x86_64-w64-mingw32.static.posix/lib -LE:/biocbuild/bbs-3.21-bioc/R/bin/x64 -lR
installing to E:/biocbuild/bbs-3.21-bioc/meat/rhdf5client.buildbin-libdir/00LOCK-rhdf5client/00new/rhdf5client/libs/x64
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* MD5 sums
packaged installation of 'rhdf5client' as rhdf5client_1.29.0.zip
* DONE (rhdf5client)