Back to Multiple platform build/check report for BioC 3.21: simplified long |
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This page was generated on 2025-02-03 12:37 -0500 (Mon, 03 Feb 2025).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
nebbiolo1 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | R Under development (unstable) (2025-01-20 r87609) -- "Unsuffered Consequences" | 4704 |
palomino7 | Windows Server 2022 Datacenter | x64 | R Under development (unstable) (2025-01-21 r87610 ucrt) -- "Unsuffered Consequences" | 4467 |
lconway | macOS 12.7.1 Monterey | x86_64 | R Under development (unstable) (2025-01-22 r87618) -- "Unsuffered Consequences" | 4478 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
Package 1660/2289 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
rawDiag 1.3.4 (landing page) Christian Panse
| nebbiolo1 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | OK | OK | OK | |||||||||
palomino7 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | |||||||||
lconway | macOS 12.7.1 Monterey / x86_64 | OK | OK | OK | OK | |||||||||
To the developers/maintainers of the rawDiag package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/rawDiag.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
Package: rawDiag |
Version: 1.3.4 |
Command: /home/biocbuild/bbs-3.21-bioc/R/bin/R CMD check --install=check:rawDiag.install-out.txt --library=/home/biocbuild/bbs-3.21-bioc/R/site-library --timings rawDiag_1.3.4.tar.gz |
StartedAt: 2025-02-03 01:32:42 -0500 (Mon, 03 Feb 2025) |
EndedAt: 2025-02-03 01:35:06 -0500 (Mon, 03 Feb 2025) |
EllapsedTime: 144.3 seconds |
RetCode: 0 |
Status: OK |
CheckDir: rawDiag.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.21-bioc/R/bin/R CMD check --install=check:rawDiag.install-out.txt --library=/home/biocbuild/bbs-3.21-bioc/R/site-library --timings rawDiag_1.3.4.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/home/biocbuild/bbs-3.21-bioc/meat/rawDiag.Rcheck’ * using R Under development (unstable) (2025-01-20 r87609) * using platform: x86_64-pc-linux-gnu * R was compiled by gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0 GNU Fortran (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0 * running under: Ubuntu 24.04.1 LTS * using session charset: UTF-8 * checking for file ‘rawDiag/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘rawDiag’ version ‘1.3.4’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘rawDiag’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking whether startup messages can be suppressed ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... Running ‘testthat.R’ OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking re-building of vignette outputs ... OK * checking PDF version of manual ... OK * DONE Status: OK
rawDiag.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.21-bioc/R/bin/R CMD INSTALL rawDiag ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.21-bioc/R/site-library’ * installing *source* package ‘rawDiag’ ... ** this is package ‘rawDiag’ version ‘1.3.4’ ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (rawDiag)
rawDiag.Rcheck/tests/testthat.Rout
R Under development (unstable) (2025-01-20 r87609) -- "Unsuffered Consequences" Copyright (C) 2025 The R Foundation for Statistical Computing Platform: x86_64-pc-linux-gnu R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > #R > > library(testthat) > > suppressPackageStartupMessages(library(rawDiag)) > > rawDiag::checkRawrr() [1] TRUE > > rawrr::installRawrrExe() NULL > > test_check("rawDiag") [ FAIL 0 | WARN 1 | SKIP 0 | PASS 14 ] [ FAIL 0 | WARN 1 | SKIP 0 | PASS 14 ] > > proc.time() user system elapsed 6.488 1.492 8.206
rawDiag.Rcheck/rawDiag-Ex.timings
name | user | system | elapsed | |
buildRawDiagShinyApp | 0.000 | 0.000 | 0.001 | |
dot-fillNAgaps | 0 | 0 | 0 | |
is.rawDiag | 1.788 | 0.489 | 2.434 | |
plotChargeState | 3.151 | 0.758 | 4.058 | |
plotCycleLoad | 2.629 | 0.545 | 3.303 | |
plotCycleTime | 2.038 | 0.563 | 2.728 | |
plotInjectionTime | 2.118 | 0.584 | 2.840 | |
plotLockMassCorrection | 1.947 | 0.530 | 2.635 | |
plotMassDistribution | 1.878 | 0.610 | 2.653 | |
plotMzDistribution | 1.940 | 0.532 | 2.590 | |
plotPrecursorHeatmap | 2.043 | 0.575 | 2.752 | |
plotScanTime | 2.015 | 0.528 | 2.703 | |
plotTicBasepeak | 1.960 | 0.517 | 2.751 | |
rawDiagServer | 0 | 0 | 0 | |
rawDiagUI | 0.001 | 0.000 | 0.001 | |
readRaw | 1.769 | 0.616 | 2.490 | |