Multiple platform build/check report for BioC 3.22 - BUILD results for quantiseqr on lconway

Hostname	OS	Arch (*)	R version	Installed pkgs
nebbiolo2	Linux (Ubuntu 24.04.2 LTS)	x86_64	4.5.1 (2025-06-13) -- "Great Square Root"	4815
palomino8	Windows Server 2022 Datacenter	x64	4.5.1 (2025-06-13 ucrt) -- "Great Square Root"	4550
lconway	macOS 12.7.1 Monterey	x86_64	4.5.1 (2025-06-13) -- "Great Square Root"	4592
kjohnson3	macOS 13.7.1 Ventura	arm64	4.5.1 Patched (2025-06-14 r88325) -- "Great Square Root"	4534
Click on any hostname to see more info about the system (e.g. compilers) () as reported by 'uname -p', except on Windows and Mac OS X*

BUILD results for quantiseqr on lconway

To the developers/maintainers of the quantiseqr package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/quantiseqr.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: quantiseqr

Version: 1.17.0

Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data quantiseqr

StartedAt: 2025-08-06 18:24:32 -0400 (Wed, 06 Aug 2025)

EndedAt: 2025-08-06 18:25:38 -0400 (Wed, 06 Aug 2025)

EllapsedTime: 66.3 seconds

RetCode: 1

Status: ERROR

PackageFile: None

PackageFileSize: NA

Command output

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### Running command:
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###   /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data quantiseqr
###
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* checking for file ‘quantiseqr/DESCRIPTION’ ... OK
* preparing ‘quantiseqr’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘using_quantiseqr.Rmd’ using rmarkdown
2025-08-06 18:25:15.581 R[1206:393725958] XType: com.apple.fonts is not accessible.
2025-08-06 18:25:15.582 R[1206:393725958] XType: XTFontStaticRegistry is enabled.
trying URL 'https://ftp.ncbi.nlm.nih.gov/geo/series/GSE107nnn/GSE107572/suppl//GSE107572_tpm_PBMC_RNAseq.txt.gz?tool=geoquery'
Content type 'application/x-gzip' length 753545 bytes (735 KB)
==================================================
downloaded 735 KB


Quitting from using_quantiseqr.Rmd:297-316 [ex3-retrieve-run]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `quantiseqr::run_quantiseq()`:
! Expecting a matrix/an object with numeric values to be provided
---
Backtrace:
    ▆
 1. └─quantiseqr::run_quantiseq(...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'using_quantiseqr.Rmd' failed with diagnostics:
Expecting a matrix/an object with numeric values to be provided
--- failed re-building ‘using_quantiseqr.Rmd’

SUMMARY: processing the following file failed:
  ‘using_quantiseqr.Rmd’

Error: Vignette re-building failed.
Execution halted