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This page was generated on 2025-11-01 11:32 -0400 (Sat, 01 Nov 2025).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 24.04.3 LTS)x86_64R Under development (unstable) (2025-10-20 r88955) -- "Unsuffered Consequences" 4774
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Package 1653/2321HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
qPLEXanalyzer 1.29.0  (landing page)
Ashley Sawle
Snapshot Date: 2025-10-31 13:40 -0400 (Fri, 31 Oct 2025)
git_url: https://git.bioconductor.org/packages/qPLEXanalyzer
git_branch: devel
git_last_commit: d72dc3a
git_last_commit_date: 2025-10-29 10:46:08 -0400 (Wed, 29 Oct 2025)
nebbiolo1Linux (Ubuntu 24.04.3 LTS) / x86_64  OK    ERROR  skipped

BUILD results for qPLEXanalyzer on nebbiolo1

To the developers/maintainers of the qPLEXanalyzer package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/qPLEXanalyzer.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: qPLEXanalyzer
Version: 1.29.0
Command: /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data qPLEXanalyzer
StartedAt: 2025-10-31 19:35:45 -0400 (Fri, 31 Oct 2025)
EndedAt: 2025-10-31 19:36:48 -0400 (Fri, 31 Oct 2025)
EllapsedTime: 63.1 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

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### Running command:
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###   /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data qPLEXanalyzer
###
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* checking for file ‘qPLEXanalyzer/DESCRIPTION’ ... OK
* preparing ‘qPLEXanalyzer’:
* checking DESCRIPTION meta-information ... OK
* installing the package (it is needed to build vignettes)
* creating vignettes ... ERROR
--- re-building ‘qPLEXanalyzer.Rmd’ using rmarkdown

Quitting from qPLEXanalyzer.Rmd:427-433 [diffexp]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error:
! 'DSG.FA - FA' is not a valid contrast. Available contrasts:
       DSG.FA_vs_FA
---
Backtrace:
    ▆
 1. └─qPLEXanalyzer::getContrastResults(...)
 2.   └─qPLEXanalyzer:::checkArg_getContrastResults(...)
 3.     └─assertthat::assert_that(is_validContrast(contrast, diffstats))
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'qPLEXanalyzer.Rmd' failed with diagnostics:
'DSG.FA - FA' is not a valid contrast. Available contrasts:
       DSG.FA_vs_FA
--- failed re-building ‘qPLEXanalyzer.Rmd’

SUMMARY: processing the following file failed:
  ‘qPLEXanalyzer.Rmd’

Error: Vignette re-building failed.
Execution halted