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###
### Running command:
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### /home/biocbuild/bbs-3.21-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data puma
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* checking for file ‘puma/DESCRIPTION’ ... OK
* preparing ‘puma’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
-----------------------------------
* installing *source* package ‘puma’ ...
** using staged installation
** libs
using C compiler: ‘gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0’
gcc -I"/home/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG -I/usr/local/include -DSTRICT_R_HEADERS=1 -fpic -g -O2 -Wall -c PMmultimgmos.c -o PMmultimgmos.o
PMmultimgmos.c: In function ‘freemem_mmgmospm’:
PMmultimgmos.c:138:53: warning: implicit declaration of function ‘Free’; did you mean ‘free’? [-Wimplicit-function-declaration]
138 | if (in_param.parameters[j] != NULL) Free(in_param.parameters[j]);
| ^~~~
| free
In file included from PMmultimgmos.c:149:
o8comm.h: In function ‘pmcalparameters’:
o8comm.h:60:15: warning: unused variable ‘xst’ [-Wunused-variable]
60 | X DDOUBLE *xst;
| ^~~
o8comm.h:58:14: warning: unused variable ‘nreset’ [-Wunused-variable]
58 | X IINTEGER nreset;
| ^~~~~~
o8comm.h:56:23: warning: unused variable ‘big’ [-Wunused-variable]
56 | X DDOUBLE *low,*up,big;
| ^~~
o8comm.h:56:20: warning: unused variable ‘up’ [-Wunused-variable]
56 | X DDOUBLE *low,*up,big;
| ^~
o8comm.h:56:15: warning: unused variable ‘low’ [-Wunused-variable]
56 | X DDOUBLE *low,*up,big;
| ^~~
o8comm.h:54:19: warning: unused variable ‘og’ [-Wunused-variable]
54 | X DDOUBLE *ug,*og;
| ^~
o8comm.h:54:15: warning: unused variable ‘ug’ [-Wunused-variable]
54 | X DDOUBLE *ug,*og;
| ^~
o8comm.h:52:20: warning: unused variable ‘meu’ [-Wunused-variable]
52 | X FILE *prou,*meu;
| ^~~
o8comm.h:52:14: warning: unused variable ‘prou’ [-Wunused-variable]
52 | X FILE *prou,*meu;
| ^~~~
o8comm.h:50:33: warning: unused variable ‘lastch’ [-Wunused-variable]
50 | X IINTEGER clow,lastdw,lastup,lastch;
| ^~~~~~
o8comm.h:50:26: warning: unused variable ‘lastup’ [-Wunused-variable]
50 | X IINTEGER clow,lastdw,lastup,lastch;
| ^~~~~~
o8comm.h:50:19: warning: unused variable ‘lastdw’ [-Wunused-variable]
50 | X IINTEGER clow,lastdw,lastup,lastch;
| ^~~~~~
o8comm.h:50:14: warning: unused variable ‘clow’ [-Wunused-variable]
50 | X IINTEGER clow,lastdw,lastup,lastch;
| ^~~~
o8comm.h:49:14: warning: unused variable ‘level’ [-Wunused-variable]
49 | X DDOUBLE level;
| ^~~~~
o8comm.h:47:21: warning: unused variable ‘stmaxl’ [-Wunused-variable]
47 | X DDOUBLE delta1,stmaxl;
| ^~~~~~
o8comm.h:47:14: warning: unused variable ‘delta1’ [-Wunused-variable]
47 | X DDOUBLE delta1,stmaxl;
| ^~~~~~
o8comm.h:46:50: warning: unused variable ‘stptrm’ [-Wunused-variable]
46 | X DDOUBLE alpha,bbeta,theta,sigsm,sigla,delta,stptrm;
| ^~~~~~
o8comm.h:46:44: warning: unused variable ‘delta’ [-Wunused-variable]
46 | X DDOUBLE alpha,bbeta,theta,sigsm,sigla,delta,stptrm;
| ^~~~~
o8comm.h:46:38: warning: unused variable ‘sigla’ [-Wunused-variable]
46 | X DDOUBLE alpha,bbeta,theta,sigsm,sigla,delta,stptrm;
| ^~~~~
o8comm.h:46:32: warning: unused variable ‘sigsm’ [-Wunused-variable]
46 | X DDOUBLE alpha,bbeta,theta,sigsm,sigla,delta,stptrm;
| ^~~~~
o8comm.h:46:26: warning: unused variable ‘theta’ [-Wunused-variable]
46 | X DDOUBLE alpha,bbeta,theta,sigsm,sigla,delta,stptrm;
| ^~~~~
o8comm.h:46:20: warning: unused variable ‘bbeta’ [-Wunused-variable]
46 | X DDOUBLE alpha,bbeta,theta,sigsm,sigla,delta,stptrm;
| ^~~~~
o8comm.h:46:14: warning: unused variable ‘alpha’ [-Wunused-variable]
46 | X DDOUBLE alpha,bbeta,theta,sigsm,sigla,delta,stptrm;
| ^~~~~
o8comm.h:44:40: warning: unused variable ‘taumax’ [-Wunused-variable]
44 | scfmax,updmy0,tauqp,taufac,taumax;
| ^~~~~~
o8comm.h:44:33: warning: unused variable ‘taufac’ [-Wunused-variable]
44 | scfmax,updmy0,tauqp,taufac,taumax;
| ^~~~~~
o8comm.h:44:27: warning: unused variable ‘tauqp’ [-Wunused-variable]
44 | scfmax,updmy0,tauqp,taufac,taumax;
| ^~~~~
o8comm.h:44:20: warning: unused variable ‘updmy0’ [-Wunused-variable]
44 | scfmax,updmy0,tauqp,taufac,taumax;
| ^~~~~~
o8comm.h:44:13: warning: unused variable ‘scfmax’ [-Wunused-variable]
44 | scfmax,updmy0,tauqp,taufac,taumax;
| ^~~~~~
o8comm.h:43:46: warning: unused variable ‘c1d’ [-Wunused-variable]
43 | X DDOUBLE smalld,smallw,rho,rho1,eta,epsx,c1d,
| ^~~
o8comm.h:43:41: warning: unused variable ‘epsx’ [-Wunused-variable]
43 | X DDOUBLE smalld,smallw,rho,rho1,eta,epsx,c1d,
| ^~~~
o8comm.h:43:37: warning: unused variable ‘eta’ [-Wunused-variable]
43 | X DDOUBLE smalld,smallw,rho,rho1,eta,epsx,c1d,
| ^~~
o8comm.h:43:32: warning: unused variable ‘rho1’ [-Wunused-variable]
43 | X DDOUBLE smalld,smallw,rho,rho1,eta,epsx,c1d,
| ^~~~
o8comm.h:43:28: warning: unused variable ‘rho’ [-Wunused-variable]
43 | X DDOUBLE smalld,smallw,rho,rho1,eta,epsx,c1d,
| ^~~
o8comm.h:43:21: warning: unused variable ‘smallw’ [-Wunused-variable]
43 | X DDOUBLE smalld,smallw,rho,rho1,eta,epsx,c1d,
| ^~~~~~
o8comm.h:43:14: warning: unused variable ‘smalld’ [-Wunused-variable]
43 | X DDOUBLE smalld,smallw,rho,rho1,eta,epsx,c1d,
| ^~~~~~
o8comm.h:42:45: warning: unused variable ‘ny’ [-Wunused-variable]
42 | X DDOUBLE del,del0,del01,delmin,tau0,tau,ny;
| ^~
o8comm.h:42:41: warning: unused variable ‘tau’ [-Wunused-variable]
42 | X DDOUBLE del,del0,del01,delmin,tau0,tau,ny;
| ^~~
o8comm.h:42:36: warning: unused variable ‘tau0’ [-Wunused-variable]
42 | X DDOUBLE del,del0,del01,delmin,tau0,tau,ny;
| ^~~~
o8comm.h:42:29: warning: unused variable ‘delmin’ [-Wunused-variable]
42 | X DDOUBLE del,del0,del01,delmin,tau0,tau,ny;
| ^~~~~~
o8comm.h:42:23: warning: unused variable ‘del01’ [-Wunused-variable]
42 | X DDOUBLE del,del0,del01,delmin,tau0,tau,ny;
| ^~~~~
o8comm.h:42:18: warning: unused variable ‘del0’ [-Wunused-variable]
42 | X DDOUBLE del,del0,del01,delmin,tau0,tau,ny;
| ^~~~
o8comm.h:42:14: warning: unused variable ‘del’ [-Wunused-variable]
42 | X DDOUBLE del,del0,del01,delmin,tau0,tau,ny;
| ^~~
o8comm.h:41:14: warning: unused variable ‘iterma’ [-Wunused-variable]
41 | X IINTEGER iterma;
| ^~~~~~
o8comm.h:39:32: warning: unused variable ‘work’ [-Wunused-variable]
39 | *yu,*slack,infeas,*work;
| ^~~~
o8comm.h:39:24: warning: unused variable ‘infeas’ [-Wunused-variable]
39 | *yu,*slack,infeas,*work;
| ^~~~~~
o8comm.h:39:18: warning: unused variable ‘slack’ [-Wunused-variable]
39 | *yu,*slack,infeas,*work;
| ^~~~~
o8comm.h:39:14: warning: unused variable ‘yu’ [-Wunused-variable]
39 | *yu,*slack,infeas,*work;
| ^~
o8comm.h:38:24: warning: unused variable ‘scf0’ [-Wunused-variable]
38 | *resst,scf,scf0,
| ^~~~
o8comm.h:38:20: warning: unused variable ‘scf’ [-Wunused-variable]
38 | *resst,scf,scf0,
| ^~~
o8comm.h:38:14: warning: unused variable ‘resst’ [-Wunused-variable]
38 | *resst,scf,scf0,
| ^~~~~
o8comm.h:37:20: warning: unused variable ‘res1’ [-Wunused-variable]
37 | *res0,*res1,
| ^~~~
o8comm.h:37:14: warning: unused variable ‘res0’ [-Wunused-variable]
37 | *res0,*res1,
| ^~~~
o8comm.h:36:21: warning: unused variable ‘res’ [-Wunused-variable]
36 | *w,*w1,*res,
| ^~~
o8comm.h:36:17: warning: unused variable ‘w1’ [-Wunused-variable]
36 | *w,*w1,*res,
| ^~
o8comm.h:36:14: warning: unused variable ‘w’ [-Wunused-variable]
36 | *w,*w1,*res,
| ^
o8comm.h:35:18: warning: unused variable ‘u0’ [-Wunused-variable]
35 | X DDOUBLE *u,*u0,
| ^~
o8comm.h:35:15: warning: unused variable ‘u’ [-Wunused-variable]
35 | X DDOUBLE *u,*u0,
| ^
o8comm.h:33:32: warning: unused variable ‘clist’ [-Wunused-variable]
33 | *o8bind0, *aalist,*clist;
| ^~~~~
o8comm.h:33:24: warning: unused variable ‘aalist’ [-Wunused-variable]
33 | *o8bind0, *aalist,*clist;
| ^~~~~~
o8comm.h:33:14: warning: unused variable ‘o8bind0’ [-Wunused-variable]
33 | *o8bind0, *aalist,*clist;
| ^~~~~~~
o8comm.h:32:30: warning: unused variable ‘o8bind’ [-Wunused-variable]
32 | X IINTEGER *violis,*alist,*o8bind,
| ^~~~~~
o8comm.h:32:23: warning: unused variable ‘alist’ [-Wunused-variable]
32 | X IINTEGER *violis,*alist,*o8bind,
| ^~~~~
o8comm.h:32:15: warning: unused variable ‘violis’ [-Wunused-variable]
32 | X IINTEGER *violis,*alist,*o8bind,
| ^~~~~~
o8comm.h:30:38: warning: unused variable ‘matsc’ [-Wunused-variable]
30 | X DDOUBLE **a,scalm,scalm2,*diag0,matsc;
| ^~~~~
o8comm.h:30:32: warning: unused variable ‘diag0’ [-Wunused-variable]
30 | X DDOUBLE **a,scalm,scalm2,*diag0,matsc;
| ^~~~~
o8comm.h:30:24: warning: unused variable ‘scalm2’ [-Wunused-variable]
30 | X DDOUBLE **a,scalm,scalm2,*diag0,matsc;
| ^~~~~~
o8comm.h:30:18: warning: unused variable ‘scalm’ [-Wunused-variable]
30 | X DDOUBLE **a,scalm,scalm2,*diag0,matsc;
| ^~~~~
o8comm.h:30:16: warning: unused variable ‘a’ [-Wunused-variable]
30 | X DDOUBLE **a,scalm,scalm2,*diag0,matsc;
| ^
o8comm.h:26:14: warning: unused variable ‘colle’ [-Wunused-variable]
26 | *colle;
| ^~~~~
o8comm.h:25:14: warning: unused variable ‘cscal’ [-Wunused-variable]
25 | *cscal,
| ^~~~~
o8comm.h:24:27: warning: unused variable ‘diag’ [-Wunused-variable]
24 | X DDOUBLE **qr,*betaq,*diag,
| ^~~~
o8comm.h:24:20: warning: unused variable ‘betaq’ [-Wunused-variable]
24 | X DDOUBLE **qr,*betaq,*diag,
| ^~~~~
o8comm.h:24:16: warning: unused variable ‘qr’ [-Wunused-variable]
24 | X DDOUBLE **qr,*betaq,*diag,
| ^~
o8comm.h:23:34: warning: unused variable ‘rank’ [-Wunused-variable]
23 | X IINTEGER *perm,*perm1,*colno,rank;
| ^~~~
o8comm.h:23:28: warning: unused variable ‘colno’ [-Wunused-variable]
23 | X IINTEGER *perm,*perm1,*colno,rank;
| ^~~~~
o8comm.h:23:21: warning: unused variable ‘perm1’ [-Wunused-variable]
23 | X IINTEGER *perm,*perm1,*colno,rank;
| ^~~~~
o8comm.h:23:15: warning: unused variable ‘perm’ [-Wunused-variable]
23 | X IINTEGER *perm,*perm1,*colno,rank;
| ^~~~
o8comm.h:21:21: warning: unused variable ‘gresn’ [-Wunused-variable]
21 | **gres,*gresn;
| ^~~~~
o8comm.h:21:15: warning: unused variable ‘gres’ [-Wunused-variable]
21 | **gres,*gresn;
| ^~~~
o8comm.h:20:38: warning: unused variable ‘gphi1’ [-Wunused-variable]
20 | X DDOUBLE *gradf,gfn,*qgf,*gphi0,*gphi1,
| ^~~~~
o8comm.h:20:31: warning: unused variable ‘gphi0’ [-Wunused-variable]
20 | X DDOUBLE *gradf,gfn,*qgf,*gphi0,*gphi1,
| ^~~~~
o8comm.h:20:26: warning: unused variable ‘qgf’ [-Wunused-variable]
20 | X DDOUBLE *gradf,gfn,*qgf,*gphi0,*gphi1,
| ^~~
o8comm.h:20:21: warning: unused variable ‘gfn’ [-Wunused-variable]
20 | X DDOUBLE *gradf,gfn,*qgf,*gphi0,*gphi1,
| ^~~
o8comm.h:20:15: warning: unused variable ‘gradf’ [-Wunused-variable]
20 | X DDOUBLE *gradf,gfn,*qgf,*gphi0,*gphi1,
| ^~~~~
o8comm.h:18:24: warning: unused variable ‘resmin’ [-Wunused-variable]
18 | *dd,*difx,*resmin;
| ^~~~~~
o8comm.h:18:18: warning: unused variable ‘difx’ [-Wunused-variable]
18 | *dd,*difx,*resmin;
| ^~~~
o8comm.h:18:14: warning: unused variable ‘dd’ [-Wunused-variable]
18 | *dd,*difx,*resmin;
| ^~
o8comm.h:17:42: warning: unused variable ‘d0’ [-Wunused-variable]
17 | X DDOUBLE *donlp2_x,*x0,*x1,*xmin,*d,*d0,
| ^~
o8comm.h:17:39: warning: unused variable ‘d’ [-Wunused-variable]
17 | X DDOUBLE *donlp2_x,*x0,*x1,*xmin,*d,*d0,
| ^
o8comm.h:17:33: warning: unused variable ‘xmin’ [-Wunused-variable]
17 | X DDOUBLE *donlp2_x,*x0,*x1,*xmin,*d,*d0,
| ^~~~
o8comm.h:17:29: warning: unused variable ‘x1’ [-Wunused-variable]
17 | X DDOUBLE *donlp2_x,*x0,*x1,*xmin,*d,*d0,
| ^~
o8comm.h:17:25: warning: unused variable ‘x0’ [-Wunused-variable]
17 | X DDOUBLE *donlp2_x,*x0,*x1,*xmin,*d,*d0,
| ^~
o8comm.h:17:15: warning: unused variable ‘donlp2_x’ [-Wunused-variable]
17 | X DDOUBLE *donlp2_x,*x0,*x1,*xmin,*d,*d0,
| ^~~~~~~~
o8comm.h:16:39: warning: unused variable ‘upsim’ [-Wunused-variable]
16 | X DDOUBLE sig,sigmin,dirder,cosphi,upsim;
| ^~~~~
o8comm.h:16:32: warning: unused variable ‘cosphi’ [-Wunused-variable]
16 | X DDOUBLE sig,sigmin,dirder,cosphi,upsim;
| ^~~~~~
o8comm.h:16:25: warning: unused variable ‘dirder’ [-Wunused-variable]
16 | X DDOUBLE sig,sigmin,dirder,cosphi,upsim;
| ^~~~~~
o8comm.h:16:18: warning: unused variable ‘sigmin’ [-Wunused-variable]
16 | X DDOUBLE sig,sigmin,dirder,cosphi,upsim;
| ^~~~~~
o8comm.h:16:14: warning: unused variable ‘sig’ [-Wunused-variable]
16 | X DDOUBLE sig,sigmin,dirder,cosphi,upsim;
| ^~~
o8comm.h:15:70: warning: unused variable ‘d0norm’ [-Wunused-variable]
15 | fxst,donlp2_fmin,b2n,b2n0,xnorm,x0norm,sig0,dscal,ddnorm,d0norm;
| ^~~~~~
o8comm.h:15:63: warning: unused variable ‘ddnorm’ [-Wunused-variable]
15 | fxst,donlp2_fmin,b2n,b2n0,xnorm,x0norm,sig0,dscal,ddnorm,d0norm;
| ^~~~~~
o8comm.h:15:57: warning: unused variable ‘dscal’ [-Wunused-variable]
15 | fxst,donlp2_fmin,b2n,b2n0,xnorm,x0norm,sig0,dscal,ddnorm,d0norm;
| ^~~~~
o8comm.h:15:52: warning: unused variable ‘sig0’ [-Wunused-variable]
15 | fxst,donlp2_fmin,b2n,b2n0,xnorm,x0norm,sig0,dscal,ddnorm,d0norm;
| ^~~~
o8comm.h:15:45: warning: unused variable ‘x0norm’ [-Wunused-variable]
15 | fxst,donlp2_fmin,b2n,b2n0,xnorm,x0norm,sig0,dscal,ddnorm,d0norm;
| ^~~~~~
o8comm.h:15:39: warning: unused variable ‘xnorm’ [-Wunused-variable]
15 | fxst,donlp2_fmin,b2n,b2n0,xnorm,x0norm,sig0,dscal,ddnorm,d0norm;
| ^~~~~
o8comm.h:15:34: warning: unused variable ‘b2n0’ [-Wunused-variable]
15 | fxst,donlp2_fmin,b2n,b2n0,xnorm,x0norm,sig0,dscal,ddnorm,d0norm;
| ^~~~
o8comm.h:15:30: warning: unused variable ‘b2n’ [-Wunused-variable]
15 | fxst,donlp2_fmin,b2n,b2n0,xnorm,x0norm,sig0,dscal,ddnorm,d0norm;
| ^~~
o8comm.h:15:18: warning: unused variable ‘donlp2_fmin’ [-Wunused-variable]
15 | fxst,donlp2_fmin,b2n,b2n0,xnorm,x0norm,sig0,dscal,ddnorm,d0norm;
| ^~~~~~~~~~~
o8comm.h:15:13: warning: unused variable ‘fxst’ [-Wunused-variable]
15 | fxst,donlp2_fmin,b2n,b2n0,xnorm,x0norm,sig0,dscal,ddnorm,d0norm;
| ^~~~
o8comm.h:14:41: warning: unused variable ‘fx1’ [-Wunused-variable]
14 | phi,phi0,phi1,phimin,fx,fx0,fx1,
| ^~~
o8comm.h:14:37: warning: unused variable ‘fx0’ [-Wunused-variable]
14 | phi,phi0,phi1,phimin,fx,fx0,fx1,
| ^~~
o8comm.h:14:27: warning: unused variable ‘phimin’ [-Wunused-variable]
14 | phi,phi0,phi1,phimin,fx,fx0,fx1,
| ^~~~~~
o8comm.h:14:22: warning: unused variable ‘phi1’ [-Wunused-variable]
14 | phi,phi0,phi1,phimin,fx,fx0,fx1,
| ^~~~
o8comm.h:14:17: warning: unused variable ‘phi0’ [-Wunused-variable]
14 | phi,phi0,phi1,phimin,fx,fx0,fx1,
| ^~~~
o8comm.h:14:13: warning: unused variable ‘phi’ [-Wunused-variable]
14 | phi,phi0,phi1,phimin,fx,fx0,fx1,
| ^~~
o8comm.h:13:24: warning: unused variable ‘psimin’ [-Wunused-variable]
13 | psi1,psist,psimin,
| ^~~~~~
o8comm.h:13:18: warning: unused variable ‘psist’ [-Wunused-variable]
13 | psi1,psist,psimin,
| ^~~~~
o8comm.h:13:13: warning: unused variable ‘psi1’ [-Wunused-variable]
13 | psi1,psist,psimin,
| ^~~~
o8comm.h:12:42: warning: unused variable ‘psi0’ [-Wunused-variable]
12 | X DDOUBLE upsi,upsi0,upsi1,upsist,psi,psi0,
| ^~~~
o8comm.h:12:38: warning: unused variable ‘psi’ [-Wunused-variable]
12 | X DDOUBLE upsi,upsi0,upsi1,upsist,psi,psi0,
| ^~~
o8comm.h:12:31: warning: unused variable ‘upsist’ [-Wunused-variable]
12 | X DDOUBLE upsi,upsi0,upsi1,upsist,psi,psi0,
| ^~~~~~
o8comm.h:12:25: warning: unused variable ‘upsi1’ [-Wunused-variable]
12 | X DDOUBLE upsi,upsi0,upsi1,upsist,psi,psi0,
| ^~~~~
o8comm.h:12:19: warning: unused variable ‘upsi0’ [-Wunused-variable]
12 | X DDOUBLE upsi,upsi0,upsi1,upsist,psi,psi0,
| ^~~~~
o8comm.h:12:14: warning: unused variable ‘upsi’ [-Wunused-variable]
12 | X DDOUBLE upsi,upsi0,upsi1,upsist,psi,psi0,
| ^~~~
o8comm.h:10:21: warning: unused variable ‘phase’ [-Wunused-variable]
10 | X IINTEGER itstep,phase;
| ^~~~~
o8comm.h:10:14: warning: unused variable ‘itstep’ [-Wunused-variable]
10 | X IINTEGER itstep,phase;
| ^~~~~~
o8comm.h:9:16: warning: unused variable ‘accinf’ [-Wunused-variable]
9 | X DDOUBLE **accinf;
| ^~~~~~
o8comm.h:8:14: warning: unused variable ‘optite’ [-Wunused-variable]
8 | X RREAL optite;
| ^~~~~~
o8comm.h:7:14: warning: unused variable ‘runtim’ [-Wunused-variable]
7 | X RREAL runtim;
| ^~~~~~
In file included from o8comm.h:5:
o8fuco.h:33:13: warning: unused variable ‘cfuerr’ [-Wunused-variable]
33 | X LLOGICAL *cfuerr;
| ^~~~~~
o8fuco.h:31:13: warning: unused variable ‘gconst’ [-Wunused-variable]
31 | X LLOGICAL *gconst;
| ^~~~~~
o8fuco.h:29:14: warning: unused variable ‘gunit’ [-Wunused-variable]
29 | X IINTEGER **gunit;
| ^~~~~
o8fuco.h:27:13: warning: unused variable ‘nonlinlist’ [-Wunused-variable]
27 | X IINTEGER *nonlinlist;
| ^~~~~~~~~~
o8fuco.h:25:15: warning: unused variable ‘ng’ [-Wunused-variable]
25 | X IINTEGER nh,ng;
| ^~
o8fuco.h:25:12: warning: unused variable ‘nh’ [-Wunused-variable]
25 | X IINTEGER nh,ng;
| ^~
o8fuco.h:20:22: warning: unused variable ‘confuerr’ [-Wunused-variable]
20 | X LLOGICAL ffuerr,*confuerr;
| ^~~~~~~~
o8fuco.h:20:14: warning: unused variable ‘ffuerr’ [-Wunused-variable]
20 | X LLOGICAL ffuerr,*confuerr;
| ^~~~~~
o8fuco.h:18:37: warning: unused variable ‘cgres’ [-Wunused-variable]
18 | X IINTEGER icf,icgf,cfincr,*cres,*cgres;
| ^~~~~
o8fuco.h:18:31: warning: unused variable ‘cres’ [-Wunused-variable]
18 | X IINTEGER icf,icgf,cfincr,*cres,*cgres;
| ^~~~
o8fuco.h:18:23: warning: unused variable ‘cfincr’ [-Wunused-variable]
18 | X IINTEGER icf,icgf,cfincr,*cres,*cgres;
| ^~~~~~
o8fuco.h:18:18: warning: unused variable ‘icgf’ [-Wunused-variable]
18 | X IINTEGER icf,icgf,cfincr,*cres,*cgres;
| ^~~~
o8fuco.h:18:14: warning: unused variable ‘icf’ [-Wunused-variable]
18 | X IINTEGER icf,icgf,cfincr,*cres,*cgres;
| ^~~
o8fuco.h:16:40: warning: unused variable ‘cold’ [-Wunused-variable]
16 | X LLOGICAL ident,eqres,silent,analyt,cold;
| ^~~~
o8fuco.h:16:33: warning: unused variable ‘analyt’ [-Wunused-variable]
16 | X LLOGICAL ident,eqres,silent,analyt,cold;
| ^~~~~~
o8fuco.h:16:26: warning: unused variable ‘silent’ [-Wunused-variable]
16 | X LLOGICAL ident,eqres,silent,analyt,cold;
| ^~~~~~
o8fuco.h:16:20: warning: unused variable ‘eqres’ [-Wunused-variable]
16 | X LLOGICAL ident,eqres,silent,analyt,cold;
| ^~~~~
o8fuco.h:16:14: warning: unused variable ‘ident’ [-Wunused-variable]
16 | X LLOGICAL ident,eqres,silent,analyt,cold;
| ^~~~~
o8fuco.h:15:37: warning: unused variable ‘singul’ [-Wunused-variable]
15 | X LLOGICAL intakt,te0,te1,te2,te3,singul;
| ^~~~~~
o8fuco.h:15:33: warning: unused variable ‘te3’ [-Wunused-variable]
15 | X LLOGICAL intakt,te0,te1,te2,te3,singul;
| ^~~
o8fuco.h:15:29: warning: unused variable ‘te2’ [-Wunused-variable]
15 | X LLOGICAL intakt,te0,te1,te2,te3,singul;
| ^~~
o8fuco.h:15:25: warning: unused variable ‘te1’ [-Wunused-variable]
15 | X LLOGICAL intakt,te0,te1,te2,te3,singul;
| ^~~
o8fuco.h:15:21: warning: unused variable ‘te0’ [-Wunused-variable]
15 | X LLOGICAL intakt,te0,te1,te2,te3,singul;
| ^~~
o8fuco.h:15:14: warning: unused variable ‘intakt’ [-Wunused-variable]
15 | X LLOGICAL intakt,te0,te1,te2,te3,singul;
| ^~~~~~
o8fuco.h:13:14: warning: unused variable ‘epsdif’ [-Wunused-variable]
13 | X DDOUBLE epsdif;
| ^~~~~~
o8fuco.h:11:13: warning: unused variable ‘name’ [-Wunused-variable]
11 | X char name[41];
| ^~~~
o8fuco.h:9:28: warning: unused variable ‘deldif’ [-Wunused-variable]
9 | X DDOUBLE epsmac,tolmac,deldif;
| ^~~~~~
o8fuco.h:9:21: warning: unused variable ‘tolmac’ [-Wunused-variable]
9 | X DDOUBLE epsmac,tolmac,deldif;
| ^~~~~~
o8fuco.h:9:14: warning: unused variable ‘epsmac’ [-Wunused-variable]
9 | X DDOUBLE epsmac,tolmac,deldif;
| ^~~~~~
o8fuco.h:7:52: warning: unused variable ‘mdualm’ [-Wunused-variable]
7 | X IINTEGER n,nr,nres,nlin,nonlin, nstep, ndualm, mdualm;
| ^~~~~~
o8fuco.h:7:44: warning: unused variable ‘ndualm’ [-Wunused-variable]
7 | X IINTEGER n,nr,nres,nlin,nonlin, nstep, ndualm, mdualm;
| ^~~~~~
o8fuco.h:7:37: warning: unused variable ‘nstep’ [-Wunused-variable]
7 | X IINTEGER n,nr,nres,nlin,nonlin, nstep, ndualm, mdualm;
| ^~~~~
o8fuco.h:7:29: warning: unused variable ‘nonlin’ [-Wunused-variable]
7 | X IINTEGER n,nr,nres,nlin,nonlin, nstep, ndualm, mdualm;
| ^~~~~~
o8fuco.h:7:24: warning: unused variable ‘nlin’ [-Wunused-variable]
7 | X IINTEGER n,nr,nres,nlin,nonlin, nstep, ndualm, mdualm;
| ^~~~
o8fuco.h:7:19: warning: unused variable ‘nres’ [-Wunused-variable]
7 | X IINTEGER n,nr,nres,nlin,nonlin, nstep, ndualm, mdualm;
| ^~~~
o8fuco.h:7:16: warning: unused variable ‘nr’ [-Wunused-variable]
7 | X IINTEGER n,nr,nres,nlin,nonlin, nstep, ndualm, mdualm;
| ^~
o8fuco.h:7:14: warning: unused variable ‘n’ [-Wunused-variable]
7 | X IINTEGER n,nr,nres,nlin,nonlin, nstep, ndualm, mdualm;
| ^
o8fuco.h:5:26: warning: unused variable ‘lup’ [-Wunused-variable]
5 | X LLOGICAL *val,*llow,*lup;
| ^~~
o8fuco.h:5:20: warning: unused variable ‘llow’ [-Wunused-variable]
5 | X LLOGICAL *val,*llow,*lup;
| ^~~~
o8fuco.h:5:15: warning: unused variable ‘val’ [-Wunused-variable]
5 | X LLOGICAL *val,*llow,*lup;
| ^~~
gcc -I"/home/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG -I/usr/local/include -DSTRICT_R_HEADERS=1 -fpic -g -O2 -Wall -c cregistration.c -o cregistration.o
gcc -I"/home/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG -I/usr/local/include -DSTRICT_R_HEADERS=1 -fpic -g -O2 -Wall -c donlp2.c -o donlp2.o
donlp2.c: In function ‘o8st’:
donlp2.c:471:33: warning: variable ‘infiny’ set but not used [-Wunused-but-set-variable]
471 | static DDOUBLE tol1,term, infiny;
| ^~~~~~
donlp2.c: At top level:
donlp2.c:2034:1: warning: "/*" within comment [-Wcomment]
2034 | /* **************************************************************************** */
|
donlp2.c: In function ‘o8opti’:
donlp2.c:2707:1: warning: "/*" within comment [-Wcomment]
2707 | /* inactive
|
donlp2.c:2079:44: warning: variable ‘iumin’ set but not used [-Wunused-but-set-variable]
2079 | static DDOUBLE delsig,delx,sum,term, iumin;
| ^~~~~
gcc -I"/home/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG -I/usr/local/include -DSTRICT_R_HEADERS=1 -fpic -g -O2 -Wall -c gme.c -o gme.o
gme.c: In function ‘gme_expparam_free’:
gme.c:28:9: warning: implicit declaration of function ‘Free’; did you mean ‘free’? [-Wimplicit-function-declaration]
28 | Free(in_param);
| ^~~~
| free
gme.c: In function ‘allocate_matrix’:
gme.c:246:22: warning: implicit declaration of function ‘Calloc’; did you mean ‘calloc’? [-Wimplicit-function-declaration]
246 | c=(double **)Calloc(m,double);
| ^~~~~~
| calloc
gme.c:246:31: error: expected expression before ‘double’
246 | c=(double **)Calloc(m,double);
| ^~~~~~
gme.c:248:39: error: expected expression before ‘double’
248 | c[i]=(double *)Calloc(n,double);
| ^~~~~~
gme.c: In function ‘gme_calparameters’:
gme.c:266:16: warning: variable ‘fstart’ set but not used [-Wunused-but-set-variable]
266 | double fstart;
| ^~~~~~
In file included from gme.c:577:
o8comm.h: In function ‘user_init_size_gme’:
o8comm.h:60:15: warning: unused variable ‘xst’ [-Wunused-variable]
60 | X DDOUBLE *xst;
| ^~~
o8comm.h:58:14: warning: unused variable ‘nreset’ [-Wunused-variable]
58 | X IINTEGER nreset;
| ^~~~~~
o8comm.h:56:23: warning: unused variable ‘big’ [-Wunused-variable]
56 | X DDOUBLE *low,*up,big;
| ^~~
o8comm.h:56:20: warning: unused variable ‘up’ [-Wunused-variable]
56 | X DDOUBLE *low,*up,big;
| ^~
o8comm.h:56:15: warning: unused variable ‘low’ [-Wunused-variable]
56 | X DDOUBLE *low,*up,big;
| ^~~
o8comm.h:54:19: warning: unused variable ‘og’ [-Wunused-variable]
54 | X DDOUBLE *ug,*og;
| ^~
o8comm.h:54:15: warning: unused variable ‘ug’ [-Wunused-variable]
54 | X DDOUBLE *ug,*og;
| ^~
o8comm.h:52:20: warning: unused variable ‘meu’ [-Wunused-variable]
52 | X FILE *prou,*meu;
| ^~~
o8comm.h:52:14: warning: unused variable ‘prou’ [-Wunused-variable]
52 | X FILE *prou,*meu;
| ^~~~
o8comm.h:50:33: warning: unused variable ‘lastch’ [-Wunused-variable]
50 | X IINTEGER clow,lastdw,lastup,lastch;
| ^~~~~~
o8comm.h:50:26: warning: unused variable ‘lastup’ [-Wunused-variable]
50 | X IINTEGER clow,lastdw,lastup,lastch;
| ^~~~~~
o8comm.h:50:19: warning: unused variable ‘lastdw’ [-Wunused-variable]
50 | X IINTEGER clow,lastdw,lastup,lastch;
| ^~~~~~
o8comm.h:50:14: warning: unused variable ‘clow’ [-Wunused-variable]
50 | X IINTEGER clow,lastdw,lastup,lastch;
| ^~~~
o8comm.h:49:14: warning: unused variable ‘level’ [-Wunused-variable]
49 | X DDOUBLE level;
| ^~~~~
o8comm.h:47:21: warning: unused variable ‘stmaxl’ [-Wunused-variable]
47 | X DDOUBLE delta1,stmaxl;
| ^~~~~~
o8comm.h:47:14: warning: unused variable ‘delta1’ [-Wunused-variable]
47 | X DDOUBLE delta1,stmaxl;
| ^~~~~~
o8comm.h:46:50: warning: unused variable ‘stptrm’ [-Wunused-variable]
46 | X DDOUBLE alpha,bbeta,theta,sigsm,sigla,delta,stptrm;
| ^~~~~~
o8comm.h:46:44: warning: unused variable ‘delta’ [-Wunused-variable]
46 | X DDOUBLE alpha,bbeta,theta,sigsm,sigla,delta,stptrm;
| ^~~~~
o8comm.h:46:38: warning: unused variable ‘sigla’ [-Wunused-variable]
46 | X DDOUBLE alpha,bbeta,theta,sigsm,sigla,delta,stptrm;
| ^~~~~
o8comm.h:46:32: warning: unused variable ‘sigsm’ [-Wunused-variable]
46 | X DDOUBLE alpha,bbeta,theta,sigsm,sigla,delta,stptrm;
| ^~~~~
o8comm.h:46:26: warning: unused variable ‘theta’ [-Wunused-variable]
46 | X DDOUBLE alpha,bbeta,theta,sigsm,sigla,delta,stptrm;
| ^~~~~
o8comm.h:46:20: warning: unused variable ‘bbeta’ [-Wunused-variable]
46 | X DDOUBLE alpha,bbeta,theta,sigsm,sigla,delta,stptrm;
| ^~~~~
o8comm.h:46:14: warning: unused variable ‘alpha’ [-Wunused-variable]
46 | X DDOUBLE alpha,bbeta,theta,sigsm,sigla,delta,stptrm;
| ^~~~~
o8comm.h:44:40: warning: unused variable ‘taumax’ [-Wunused-variable]
44 | scfmax,updmy0,tauqp,taufac,taumax;
| ^~~~~~
o8comm.h:44:33: warning: unused variable ‘taufac’ [-Wunused-variable]
44 | scfmax,updmy0,tauqp,taufac,taumax;
| ^~~~~~
o8comm.h:44:27: warning: unused variable ‘tauqp’ [-Wunused-variable]
44 | scfmax,updmy0,tauqp,taufac,taumax;
| ^~~~~
o8comm.h:44:20: warning: unused variable ‘updmy0’ [-Wunused-variable]
44 | scfmax,updmy0,tauqp,taufac,taumax;
| ^~~~~~
o8comm.h:44:13: warning: unused variable ‘scfmax’ [-Wunused-variable]
44 | scfmax,updmy0,tauqp,taufac,taumax;
| ^~~~~~
o8comm.h:43:46: warning: unused variable ‘c1d’ [-Wunused-variable]
43 | X DDOUBLE smalld,smallw,rho,rho1,eta,epsx,c1d,
| ^~~
o8comm.h:43:41: warning: unused variable ‘epsx’ [-Wunused-variable]
43 | X DDOUBLE smalld,smallw,rho,rho1,eta,epsx,c1d,
| ^~~~
o8comm.h:43:37: warning: unused variable ‘eta’ [-Wunused-variable]
43 | X DDOUBLE smalld,smallw,rho,rho1,eta,epsx,c1d,
| ^~~
o8comm.h:43:32: warning: unused variable ‘rho1’ [-Wunused-variable]
43 | X DDOUBLE smalld,smallw,rho,rho1,eta,epsx,c1d,
| ^~~~
o8comm.h:43:28: warning: unused variable ‘rho’ [-Wunused-variable]
43 | X DDOUBLE smalld,smallw,rho,rho1,eta,epsx,c1d,
| ^~~
o8comm.h:43:21: warning: unused variable ‘smallw’ [-Wunused-variable]
43 | X DDOUBLE smalld,smallw,rho,rho1,eta,epsx,c1d,
| ^~~~~~
o8comm.h:43:14: warning: unused variable ‘smalld’ [-Wunused-variable]
43 | X DDOUBLE smalld,smallw,rho,rho1,eta,epsx,c1d,
| ^~~~~~
o8comm.h:42:45: warning: unused variable ‘ny’ [-Wunused-variable]
42 | X DDOUBLE del,del0,del01,delmin,tau0,tau,ny;
| ^~
o8comm.h:42:41: warning: unused variable ‘tau’ [-Wunused-variable]
42 | X DDOUBLE del,del0,del01,delmin,tau0,tau,ny;
| ^~~
o8comm.h:42:36: warning: unused variable ‘tau0’ [-Wunused-variable]
42 | X DDOUBLE del,del0,del01,delmin,tau0,tau,ny;
| ^~~~
o8comm.h:42:29: warning: unused variable ‘delmin’ [-Wunused-variable]
42 | X DDOUBLE del,del0,del01,delmin,tau0,tau,ny;
| ^~~~~~
o8comm.h:42:23: warning: unused variable ‘del01’ [-Wunused-variable]
42 | X DDOUBLE del,del0,del01,delmin,tau0,tau,ny;
| ^~~~~
o8comm.h:42:18: warning: unused variable ‘del0’ [-Wunused-variable]
42 | X DDOUBLE del,del0,del01,delmin,tau0,tau,ny;
| ^~~~
o8comm.h:42:14: warning: unused variable ‘del’ [-Wunused-variable]
42 | X DDOUBLE del,del0,del01,delmin,tau0,tau,ny;
| ^~~
o8comm.h:39:32: warning: unused variable ‘work’ [-Wunused-variable]
39 | *yu,*slack,infeas,*work;
| ^~~~
o8comm.h:39:24: warning: unused variable ‘infeas’ [-Wunused-variable]
39 | *yu,*slack,infeas,*work;
| ^~~~~~
o8comm.h:39:18: warning: unused variable ‘slack’ [-Wunused-variable]
39 | *yu,*slack,infeas,*work;
| ^~~~~
o8comm.h:39:14: warning: unused variable ‘yu’ [-Wunused-variable]
39 | *yu,*slack,infeas,*work;
| ^~
o8comm.h:38:24: warning: unused variable ‘scf0’ [-Wunused-variable]
38 | *resst,scf,scf0,
| ^~~~
o8comm.h:38:20: warning: unused variable ‘scf’ [-Wunused-variable]
38 | *resst,scf,scf0,
| ^~~
o8comm.h:38:14: warning: unused variable ‘resst’ [-Wunused-variable]
38 | *resst,scf,scf0,
| ^~~~~
o8comm.h:37:20: warning: unused variable ‘res1’ [-Wunused-variable]
37 | *res0,*res1,
| ^~~~
o8comm.h:37:14: warning: unused variable ‘res0’ [-Wunused-variable]
37 | *res0,*res1,
| ^~~~
o8comm.h:36:21: warning: unused variable ‘res’ [-Wunused-variable]
36 | *w,*w1,*res,
| ^~~
o8comm.h:36:17: warning: unused variable ‘w1’ [-Wunused-variable]
36 | *w,*w1,*res,
| ^~
o8comm.h:36:14: warning: unused variable ‘w’ [-Wunused-variable]
36 | *w,*w1,*res,
| ^
o8comm.h:35:18: warning: unused variable ‘u0’ [-Wunused-variable]
35 | X DDOUBLE *u,*u0,
| ^~
o8comm.h:35:15: warning: unused variable ‘u’ [-Wunused-variable]
35 | X DDOUBLE *u,*u0,
| ^
o8comm.h:33:32: warning: unused variable ‘clist’ [-Wunused-variable]
33 | *o8bind0, *aalist,*clist;
| ^~~~~
o8comm.h:33:24: warning: unused variable ‘aalist’ [-Wunused-variable]
33 | *o8bind0, *aalist,*clist;
| ^~~~~~
o8comm.h:33:14: warning: unused variable ‘o8bind0’ [-Wunused-variable]
33 | *o8bind0, *aalist,*clist;
| ^~~~~~~
o8comm.h:32:30: warning: unused variable ‘o8bind’ [-Wunused-variable]
32 | X IINTEGER *violis,*alist,*o8bind,
| ^~~~~~
o8comm.h:32:23: warning: unused variable ‘alist’ [-Wunused-variable]
32 | X IINTEGER *violis,*alist,*o8bind,
| ^~~~~
o8comm.h:32:15: warning: unused variable ‘violis’ [-Wunused-variable]
32 | X IINTEGER *violis,*alist,*o8bind,
| ^~~~~~
o8comm.h:30:38: warning: unused variable ‘matsc’ [-Wunused-variable]
30 | X DDOUBLE **a,scalm,scalm2,*diag0,matsc;
| ^~~~~
o8comm.h:30:32: warning: unused variable ‘diag0’ [-Wunused-variable]
30 | X DDOUBLE **a,scalm,scalm2,*diag0,matsc;
| ^~~~~
o8comm.h:30:24: warning: unused variable ‘scalm2’ [-Wunused-variable]
30 | X DDOUBLE **a,scalm,scalm2,*diag0,matsc;
| ^~~~~~
o8comm.h:30:18: warning: unused variable ‘scalm’ [-Wunused-variable]
30 | X DDOUBLE **a,scalm,scalm2,*diag0,matsc;
| ^~~~~
o8comm.h:30:16: warning: unused variable ‘a’ [-Wunused-variable]
30 | X DDOUBLE **a,scalm,scalm2,*diag0,matsc;
| ^
o8comm.h:26:14: warning: unused variable ‘colle’ [-Wunused-variable]
26 | *colle;
| ^~~~~
o8comm.h:25:14: warning: unused variable ‘cscal’ [-Wunused-variable]
25 | *cscal,
| ^~~~~
o8comm.h:24:27: warning: unused variable ‘diag’ [-Wunused-variable]
24 | X DDOUBLE **qr,*betaq,*diag,
| ^~~~
o8comm.h:24:20: warning: unused variable ‘betaq’ [-Wunused-variable]
24 | X DDOUBLE **qr,*betaq,*diag,
| ^~~~~
o8comm.h:24:16: warning: unused variable ‘qr’ [-Wunused-variable]
24 | X DDOUBLE **qr,*betaq,*diag,
| ^~
o8comm.h:23:34: warning: unused variable ‘rank’ [-Wunused-variable]
23 | X IINTEGER *perm,*perm1,*colno,rank;
| ^~~~
o8comm.h:23:28: warning: unused variable ‘colno’ [-Wunused-variable]
23 | X IINTEGER *perm,*perm1,*colno,rank;
| ^~~~~
o8comm.h:23:21: warning: unused variable ‘perm1’ [-Wunused-variable]
23 | X IINTEGER *perm,*perm1,*colno,rank;
| ^~~~~
o8comm.h:23:15: warning: unused variable ‘perm’ [-Wunused-variable]
23 | X IINTEGER *perm,*perm1,*colno,rank;
| ^~~~
o8comm.h:21:21: warning: unused variable ‘gresn’ [-Wunused-variable]
21 | **gres,*gresn;
| ^~~~~
o8comm.h:21:15: warning: unused variable ‘gres’ [-Wunused-variable]
21 | **gres,*gresn;
| ^~~~
o8comm.h:20:38: warning: unused variable ‘gphi1’ [-Wunused-variable]
20 | X DDOUBLE *gradf,gfn,*qgf,*gphi0,*gphi1,
| ^~~~~
o8comm.h:20:31: warning: unused variable ‘gphi0’ [-Wunused-variable]
20 | X DDOUBLE *gradf,gfn,*qgf,*gphi0,*gphi1,
| ^~~~~
o8comm.h:20:26: warning: unused variable ‘qgf’ [-Wunused-variable]
20 | X DDOUBLE *gradf,gfn,*qgf,*gphi0,*gphi1,
| ^~~
o8comm.h:20:21: warning: unused variable ‘gfn’ [-Wunused-variable]
20 | X DDOUBLE *gradf,gfn,*qgf,*gphi0,*gphi1,
| ^~~
o8comm.h:20:15: warning: unused variable ‘gradf’ [-Wunused-variable]
20 | X DDOUBLE *gradf,gfn,*qgf,*gphi0,*gphi1,
| ^~~~~
o8comm.h:18:24: warning: unused variable ‘resmin’ [-Wunused-variable]
18 | *dd,*difx,*resmin;
| ^~~~~~
o8comm.h:18:18: warning: unused variable ‘difx’ [-Wunused-variable]
18 | *dd,*difx,*resmin;
| ^~~~
o8comm.h:18:14: warning: unused variable ‘dd’ [-Wunused-variable]
18 | *dd,*difx,*resmin;
| ^~
o8comm.h:17:42: warning: unused variable ‘d0’ [-Wunused-variable]
17 | X DDOUBLE *donlp2_x,*x0,*x1,*xmin,*d,*d0,
| ^~
o8comm.h:17:39: warning: unused variable ‘d’ [-Wunused-variable]
17 | X DDOUBLE *donlp2_x,*x0,*x1,*xmin,*d,*d0,
| ^
o8comm.h:17:33: warning: unused variable ‘xmin’ [-Wunused-variable]
17 | X DDOUBLE *donlp2_x,*x0,*x1,*xmin,*d,*d0,
| ^~~~
o8comm.h:17:29: warning: unused variable ‘x1’ [-Wunused-variable]
17 | X DDOUBLE *donlp2_x,*x0,*x1,*xmin,*d,*d0,
| ^~
o8comm.h:17:25: warning: unused variable ‘x0’ [-Wunused-variable]
17 | X DDOUBLE *donlp2_x,*x0,*x1,*xmin,*d,*d0,
| ^~
o8comm.h:17:15: warning: unused variable ‘donlp2_x’ [-Wunused-variable]
17 | X DDOUBLE *donlp2_x,*x0,*x1,*xmin,*d,*d0,
| ^~~~~~~~
o8comm.h:16:39: warning: unused variable ‘upsim’ [-Wunused-variable]
16 | X DDOUBLE sig,sigmin,dirder,cosphi,upsim;
| ^~~~~
o8comm.h:16:32: warning: unused variable ‘cosphi’ [-Wunused-variable]
16 | X DDOUBLE sig,sigmin,dirder,cosphi,upsim;
| ^~~~~~
o8comm.h:16:25: warning: unused variable ‘dirder’ [-Wunused-variable]
16 | X DDOUBLE sig,sigmin,dirder,cosphi,upsim;
| ^~~~~~
o8comm.h:16:18: warning: unused variable ‘sigmin’ [-Wunused-variable]
16 | X DDOUBLE sig,sigmin,dirder,cosphi,upsim;
| ^~~~~~
o8comm.h:16:14: warning: unused variable ‘sig’ [-Wunused-variable]
16 | X DDOUBLE sig,sigmin,dirder,cosphi,upsim;
| ^~~
o8comm.h:15:70: warning: unused variable ‘d0norm’ [-Wunused-variable]
15 | fxst,donlp2_fmin,b2n,b2n0,xnorm,x0norm,sig0,dscal,ddnorm,d0norm;
| ^~~~~~
o8comm.h:15:63: warning: unused variable ‘ddnorm’ [-Wunused-variable]
15 | fxst,donlp2_fmin,b2n,b2n0,xnorm,x0norm,sig0,dscal,ddnorm,d0norm;
| ^~~~~~
o8comm.h:15:57: warning: unused variable ‘dscal’ [-Wunused-variable]
15 | fxst,donlp2_fmin,b2n,b2n0,xnorm,x0norm,sig0,dscal,ddnorm,d0norm;
| ^~~~~
o8comm.h:15:52: warning: unused variable ‘sig0’ [-Wunused-variable]
15 | fxst,donlp2_fmin,b2n,b2n0,xnorm,x0norm,sig0,dscal,ddnorm,d0norm;
| ^~~~
o8comm.h:15:45: warning: unused variable ‘x0norm’ [-Wunused-variable]
15 | fxst,donlp2_fmin,b2n,b2n0,xnorm,x0norm,sig0,dscal,ddnorm,d0norm;
| ^~~~~~
o8comm.h:15:39: warning: unused variable ‘xnorm’ [-Wunused-variable]
15 | fxst,donlp2_fmin,b2n,b2n0,xnorm,x0norm,sig0,dscal,ddnorm,d0norm;
| ^~~~~
o8comm.h:15:34: warning: unused variable ‘b2n0’ [-Wunused-variable]
15 | fxst,donlp2_fmin,b2n,b2n0,xnorm,x0norm,sig0,dscal,ddnorm,d0norm;
| ^~~~
o8comm.h:15:30: warning: unused variable ‘b2n’ [-Wunused-variable]
15 | fxst,donlp2_fmin,b2n,b2n0,xnorm,x0norm,sig0,dscal,ddnorm,d0norm;
| ^~~
o8comm.h:15:18: warning: unused variable ‘donlp2_fmin’ [-Wunused-variable]
15 | fxst,donlp2_fmin,b2n,b2n0,xnorm,x0norm,sig0,dscal,ddnorm,d0norm;
| ^~~~~~~~~~~
o8comm.h:15:13: warning: unused variable ‘fxst’ [-Wunused-variable]
15 | fxst,donlp2_fmin,b2n,b2n0,xnorm,x0norm,sig0,dscal,ddnorm,d0norm;
| ^~~~
o8comm.h:14:41: warning: unused variable ‘fx1’ [-Wunused-variable]
14 | phi,phi0,phi1,phimin,fx,fx0,fx1,
| ^~~
o8comm.h:14:37: warning: unused variable ‘fx0’ [-Wunused-variable]
14 | phi,phi0,phi1,phimin,fx,fx0,fx1,
| ^~~
o8comm.h:14:34: warning: unused variable ‘fx’ [-Wunused-variable]
14 | phi,phi0,phi1,phimin,fx,fx0,fx1,
| ^~
o8comm.h:14:27: warning: unused variable ‘phimin’ [-Wunused-variable]
14 | phi,phi0,phi1,phimin,fx,fx0,fx1,
| ^~~~~~
o8comm.h:14:22: warning: unused variable ‘phi1’ [-Wunused-variable]
14 | phi,phi0,phi1,phimin,fx,fx0,fx1,
| ^~~~
o8comm.h:14:17: warning: unused variable ‘phi0’ [-Wunused-variable]
14 | phi,phi0,phi1,phimin,fx,fx0,fx1,
| ^~~~
o8comm.h:14:13: warning: unused variable ‘phi’ [-Wunused-variable]
14 | phi,phi0,phi1,phimin,fx,fx0,fx1,
| ^~~
o8comm.h:13:24: warning: unused variable ‘psimin’ [-Wunused-variable]
13 | psi1,psist,psimin,
| ^~~~~~
o8comm.h:13:18: warning: unused variable ‘psist’ [-Wunused-variable]
13 | psi1,psist,psimin,
| ^~~~~
o8comm.h:13:13: warning: unused variable ‘psi1’ [-Wunused-variable]
13 | psi1,psist,psimin,
| ^~~~
o8comm.h:12:42: warning: unused variable ‘psi0’ [-Wunused-variable]
12 | X DDOUBLE upsi,upsi0,upsi1,upsist,psi,psi0,
| ^~~~
o8comm.h:12:38: warning: unused variable ‘psi’ [-Wunused-variable]
12 | X DDOUBLE upsi,upsi0,upsi1,upsist,psi,psi0,
| ^~~
o8comm.h:12:31: warning: unused variable ‘upsist’ [-Wunused-variable]
12 | X DDOUBLE upsi,upsi0,upsi1,upsist,psi,psi0,
| ^~~~~~
o8comm.h:12:25: warning: unused variable ‘upsi1’ [-Wunused-variable]
12 | X DDOUBLE upsi,upsi0,upsi1,upsist,psi,psi0,
| ^~~~~
o8comm.h:12:19: warning: unused variable ‘upsi0’ [-Wunused-variable]
12 | X DDOUBLE upsi,upsi0,upsi1,upsist,psi,psi0,
| ^~~~~
o8comm.h:12:14: warning: unused variable ‘upsi’ [-Wunused-variable]
12 | X DDOUBLE upsi,upsi0,upsi1,upsist,psi,psi0,
| ^~~~
o8comm.h:10:21: warning: unused variable ‘phase’ [-Wunused-variable]
10 | X IINTEGER itstep,phase;
| ^~~~~
o8comm.h:10:14: warning: unused variable ‘itstep’ [-Wunused-variable]
10 | X IINTEGER itstep,phase;
| ^~~~~~
o8comm.h:9:16: warning: unused variable ‘accinf’ [-Wunused-variable]
9 | X DDOUBLE **accinf;
| ^~~~~~
o8comm.h:8:14: warning: unused variable ‘optite’ [-Wunused-variable]
8 | X RREAL optite;
| ^~~~~~
o8comm.h:7:14: warning: unused variable ‘runtim’ [-Wunused-variable]
7 | X RREAL runtim;
| ^~~~~~
In file included from o8comm.h:5:
o8fuco.h:33:13: warning: unused variable ‘cfuerr’ [-Wunused-variable]
33 | X LLOGICAL *cfuerr;
| ^~~~~~
o8fuco.h:31:13: warning: unused variable ‘gconst’ [-Wunused-variable]
31 | X LLOGICAL *gconst;
| ^~~~~~
o8fuco.h:29:14: warning: unused variable ‘gunit’ [-Wunused-variable]
29 | X IINTEGER **gunit;
| ^~~~~
o8fuco.h:27:13: warning: unused variable ‘nonlinlist’ [-Wunused-variable]
27 | X IINTEGER *nonlinlist;
| ^~~~~~~~~~
o8fuco.h:25:15: warning: unused variable ‘ng’ [-Wunused-variable]
25 | X IINTEGER nh,ng;
| ^~
o8fuco.h:25:12: warning: unused variable ‘nh’ [-Wunused-variable]
25 | X IINTEGER nh,ng;
| ^~
o8fuco.h:20:22: warning: unused variable ‘confuerr’ [-Wunused-variable]
20 | X LLOGICAL ffuerr,*confuerr;
| ^~~~~~~~
o8fuco.h:20:14: warning: unused variable ‘ffuerr’ [-Wunused-variable]
20 | X LLOGICAL ffuerr,*confuerr;
| ^~~~~~
o8fuco.h:18:37: warning: unused variable ‘cgres’ [-Wunused-variable]
18 | X IINTEGER icf,icgf,cfincr,*cres,*cgres;
| ^~~~~
o8fuco.h:18:31: warning: unused variable ‘cres’ [-Wunused-variable]
18 | X IINTEGER icf,icgf,cfincr,*cres,*cgres;
| ^~~~
o8fuco.h:18:23: warning: unused variable ‘cfincr’ [-Wunused-variable]
18 | X IINTEGER icf,icgf,cfincr,*cres,*cgres;
| ^~~~~~
o8fuco.h:18:18: warning: unused variable ‘icgf’ [-Wunused-variable]
18 | X IINTEGER icf,icgf,cfincr,*cres,*cgres;
| ^~~~
o8fuco.h:18:14: warning: unused variable ‘icf’ [-Wunused-variable]
18 | X IINTEGER icf,icgf,cfincr,*cres,*cgres;
| ^~~
o8fuco.h:16:40: warning: unused variable ‘cold’ [-Wunused-variable]
16 | X LLOGICAL ident,eqres,silent,analyt,cold;
| ^~~~
o8fuco.h:16:33: warning: unused variable ‘analyt’ [-Wunused-variable]
16 | X LLOGICAL ident,eqres,silent,analyt,cold;
| ^~~~~~
o8fuco.h:16:26: warning: unused variable ‘silent’ [-Wunused-variable]
16 | X LLOGICAL ident,eqres,silent,analyt,cold;
| ^~~~~~
o8fuco.h:16:20: warning: unused variable ‘eqres’ [-Wunused-variable]
16 | X LLOGICAL ident,eqres,silent,analyt,cold;
| ^~~~~
o8fuco.h:16:14: warning: unused variable ‘ident’ [-Wunused-variable]
16 | X LLOGICAL ident,eqres,silent,analyt,cold;
| ^~~~~
o8fuco.h:15:37: warning: unused variable ‘singul’ [-Wunused-variable]
15 | X LLOGICAL intakt,te0,te1,te2,te3,singul;
| ^~~~~~
o8fuco.h:15:33: warning: unused variable ‘te3’ [-Wunused-variable]
15 | X LLOGICAL intakt,te0,te1,te2,te3,singul;
| ^~~
o8fuco.h:15:29: warning: unused variable ‘te2’ [-Wunused-variable]
15 | X LLOGICAL intakt,te0,te1,te2,te3,singul;
| ^~~
o8fuco.h:15:25: warning: unused variable ‘te1’ [-Wunused-variable]
15 | X LLOGICAL intakt,te0,te1,te2,te3,singul;
| ^~~
o8fuco.h:15:21: warning: unused variable ‘te0’ [-Wunused-variable]
15 | X LLOGICAL intakt,te0,te1,te2,te3,singul;
| ^~~
o8fuco.h:15:14: warning: unused variable ‘intakt’ [-Wunused-variable]
15 | X LLOGICAL intakt,te0,te1,te2,te3,singul;
| ^~~~~~
o8fuco.h:13:14: warning: unused variable ‘epsdif’ [-Wunused-variable]
13 | X DDOUBLE epsdif;
| ^~~~~~
o8fuco.h:11:13: warning: unused variable ‘name’ [-Wunused-variable]
11 | X char name[41];
| ^~~~
o8fuco.h:9:28: warning: unused variable ‘deldif’ [-Wunused-variable]
9 | X DDOUBLE epsmac,tolmac,deldif;
| ^~~~~~
o8fuco.h:9:21: warning: unused variable ‘tolmac’ [-Wunused-variable]
9 | X DDOUBLE epsmac,tolmac,deldif;
| ^~~~~~
o8fuco.h:9:14: warning: unused variable ‘epsmac’ [-Wunused-variable]
9 | X DDOUBLE epsmac,tolmac,deldif;
| ^~~~~~
o8fuco.h:7:52: warning: unused variable ‘mdualm’ [-Wunused-variable]
7 | X IINTEGER n,nr,nres,nlin,nonlin, nstep, ndualm, mdualm;
| ^~~~~~
o8fuco.h:7:44: warning: unused variable ‘ndualm’ [-Wunused-variable]
7 | X IINTEGER n,nr,nres,nlin,nonlin, nstep, ndualm, mdualm;
| ^~~~~~
o8fuco.h:7:19: warning: unused variable ‘nres’ [-Wunused-variable]
7 | X IINTEGER n,nr,nres,nlin,nonlin, nstep, ndualm, mdualm;
| ^~~~
o8fuco.h:7:16: warning: unused variable ‘nr’ [-Wunused-variable]
7 | X IINTEGER n,nr,nres,nlin,nonlin, nstep, ndualm, mdualm;
| ^~
o8fuco.h:5:26: warning: unused variable ‘lup’ [-Wunused-variable]
5 | X LLOGICAL *val,*llow,*lup;
| ^~~
o8fuco.h:5:20: warning: unused variable ‘llow’ [-Wunused-variable]
5 | X LLOGICAL *val,*llow,*lup;
| ^~~~
o8fuco.h:5:15: warning: unused variable ‘val’ [-Wunused-variable]
5 | X LLOGICAL *val,*llow,*lup;
| ^~~
In file included from gme.c:663:
o8cons.h: In function ‘solchk_gme’:
o8cons.h:11:5: warning: unused variable ‘tp4’ [-Wunused-variable]
11 | tp3,tp4;
| ^~~
o8cons.h:11:1: warning: unused variable ‘tp3’ [-Wunused-variable]
11 | tp3,tp4;
| ^~~
o8cons.h:10:21: warning: unused variable ‘tp2’ [-Wunused-variable]
10 | tm4,tm3,tm2,tm1,tp1,tp2,
| ^~~
o8cons.h:10:17: warning: unused variable ‘tp1’ [-Wunused-variable]
10 | tm4,tm3,tm2,tm1,tp1,tp2,
| ^~~
o8cons.h:10:13: warning: unused variable ‘tm1’ [-Wunused-variable]
10 | tm4,tm3,tm2,tm1,tp1,tp2,
| ^~~
o8cons.h:10:9: warning: unused variable ‘tm2’ [-Wunused-variable]
10 | tm4,tm3,tm2,tm1,tp1,tp2,
| ^~~
o8cons.h:10:5: warning: unused variable ‘tm3’ [-Wunused-variable]
10 | tm4,tm3,tm2,tm1,tp1,tp2,
| ^~~
o8cons.h:10:1: warning: unused variable ‘tm4’ [-Wunused-variable]
10 | tm4,tm3,tm2,tm1,tp1,tp2,
| ^~~
o8cons.h:9:22: warning: unused variable ‘tm5’ [-Wunused-variable]
9 | tm10,tm9,tm8,tm7,tm6,tm5,
| ^~~
o8cons.h:9:18: warning: unused variable ‘tm6’ [-Wunused-variable]
9 | tm10,tm9,tm8,tm7,tm6,tm5,
| ^~~
o8cons.h:9:14: warning: unused variable ‘tm7’ [-Wunused-variable]
9 | tm10,tm9,tm8,tm7,tm6,tm5,
| ^~~
o8cons.h:9:10: warning: unused variable ‘tm8’ [-Wunused-variable]
9 | tm10,tm9,tm8,tm7,tm6,tm5,
| ^~~
o8cons.h:9:6: warning: unused variable ‘tm9’ [-Wunused-variable]
9 | tm10,tm9,tm8,tm7,tm6,tm5,
| ^~~
o8cons.h:9:1: warning: unused variable ‘tm10’ [-Wunused-variable]
9 | tm10,tm9,tm8,tm7,tm6,tm5,
| ^~~~
o8cons.h:8:5: warning: unused variable ‘tm12’ [-Wunused-variable]
8 | c45,tm12,
| ^~~~
o8cons.h:8:1: warning: unused variable ‘c45’ [-Wunused-variable]
8 | c45,tm12,
| ^~~
o8cons.h:7:22: warning: unused variable ‘p9’ [-Wunused-variable]
7 | onep5,p2,p4,p5,p7,p8,p9,
| ^~
o8cons.h:7:19: warning: unused variable ‘p8’ [-Wunused-variable]
7 | onep5,p2,p4,p5,p7,p8,p9,
| ^~
o8cons.h:7:16: warning: unused variable ‘p7’ [-Wunused-variable]
7 | onep5,p2,p4,p5,p7,p8,p9,
| ^~
o8cons.h:7:13: warning: unused variable ‘p5’ [-Wunused-variable]
7 | onep5,p2,p4,p5,p7,p8,p9,
| ^~
o8cons.h:7:10: warning: unused variable ‘p4’ [-Wunused-variable]
7 | onep5,p2,p4,p5,p7,p8,p9,
| ^~
o8cons.h:7:7: warning: unused variable ‘p2’ [-Wunused-variable]
7 | onep5,p2,p4,p5,p7,p8,p9,
| ^~
o8cons.h:7:1: warning: unused variable ‘onep5’ [-Wunused-variable]
7 | onep5,p2,p4,p5,p7,p8,p9,
| ^~~~~
o8cons.h:6:20: warning: unused variable ‘onep3’ [-Wunused-variable]
6 | twom2,twop4,twop11,onep3,
| ^~~~~
o8cons.h:6:13: warning: unused variable ‘twop11’ [-Wunused-variable]
6 | twom2,twop4,twop11,onep3,
| ^~~~~~
o8cons.h:6:7: warning: unused variable ‘twop4’ [-Wunused-variable]
6 | twom2,twop4,twop11,onep3,
| ^~~~~
o8cons.h:6:1: warning: unused variable ‘twom2’ [-Wunused-variable]
6 | twom2,twop4,twop11,onep3,
| ^~~~~
o8cons.h:5:10: warning: unused variable ‘seven’ [-Wunused-variable]
5 | five,six,seven,
| ^~~~~
o8cons.h:5:6: warning: unused variable ‘six’ [-Wunused-variable]
5 | five,six,seven,
| ^~~
o8cons.h:5:1: warning: unused variable ‘five’ [-Wunused-variable]
5 | five,six,seven,
| ^~~~
o8cons.h:4:41: warning: unused variable ‘four’ [-Wunused-variable]
4 | extern const DDOUBLE zero,one,two,three,four,
| ^~~~
o8cons.h:4:35: warning: unused variable ‘three’ [-Wunused-variable]
4 | extern const DDOUBLE zero,one,two,three,four,
| ^~~~~
o8cons.h:4:31: warning: unused variable ‘two’ [-Wunused-variable]
4 | extern const DDOUBLE zero,one,two,three,four,
| ^~~
o8cons.h:4:27: warning: unused variable ‘one’ [-Wunused-variable]
4 | extern const DDOUBLE zero,one,two,three,four,
| ^~~
o8cons.h:4:22: warning: unused variable ‘zero’ [-Wunused-variable]
4 | extern const DDOUBLE zero,one,two,three,four,
| ^~~~
make: *** [/home/biocbuild/bbs-3.21-bioc/R/etc/Makeconf:195: gme.o] Error 1
ERROR: compilation failed for package ‘puma’
* removing ‘/tmp/RtmpqTJioi/Rinstf2f50423717e8/puma’
-----------------------------------
ERROR: package installation failed
