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This page was generated on 2025-11-05 11:32 -0500 (Wed, 05 Nov 2025).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 24.04.3 LTS)x86_64R Under development (unstable) (2025-10-20 r88955) -- "Unsuffered Consequences" 4818
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 1621/2323HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
proDA 1.25.0  (landing page)
Constantin Ahlmann-Eltze
Snapshot Date: 2025-11-04 13:40 -0500 (Tue, 04 Nov 2025)
git_url: https://git.bioconductor.org/packages/proDA
git_branch: devel
git_last_commit: df3313e
git_last_commit_date: 2025-10-29 10:53:21 -0500 (Wed, 29 Oct 2025)
nebbiolo1Linux (Ubuntu 24.04.3 LTS) / x86_64  OK    ERROR  skipped

BUILD results for proDA on nebbiolo1

To the developers/maintainers of the proDA package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/proDA.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: proDA
Version: 1.25.0
Command: /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data proDA
StartedAt: 2025-11-04 19:17:16 -0500 (Tue, 04 Nov 2025)
EndedAt: 2025-11-04 19:18:34 -0500 (Tue, 04 Nov 2025)
EllapsedTime: 78.1 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

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### Running command:
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###   /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data proDA
###
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* checking for file ‘proDA/DESCRIPTION’ ... OK
* preparing ‘proDA’:
* checking DESCRIPTION meta-information ... OK
* installing the package (it is needed to build vignettes)
* creating vignettes ... ERROR
--- re-building ‘Introduction.Rmd’ using rmarkdown
--- finished re-building ‘Introduction.Rmd’

--- re-building ‘data-import.Rmd’ using rmarkdown

Quitting from data-import.Rmd:357-377 [unnamed-chunk-19]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `library()`:
! there is no package called 'DEP'
---
Backtrace:
    ▆
 1. └─base::library(DEP)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'data-import.Rmd' failed with diagnostics:
there is no package called 'DEP'
--- failed re-building ‘data-import.Rmd’

SUMMARY: processing the following file failed:
  ‘data-import.Rmd’

Error: Vignette re-building failed.
Execution halted