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### Running command:
###
###   /home/biocbuild/R/R/bin/R CMD check --install=check:plyxp.install-out.txt --library=/home/biocbuild/R/R/site-library --no-vignettes --timings plyxp_1.3.9.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.22-bioc/meat/plyxp.Rcheck’
* using R version 4.5.0 (2025-04-11)
* using platform: aarch64-unknown-linux-gnu
* R was compiled by
    aarch64-unknown-linux-gnu-gcc (GCC) 14.2.0
    GNU Fortran (GCC) 14.2.0
* running under: openEuler 24.03 (LTS)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘plyxp/DESCRIPTION’ ... OK
* this is package ‘plyxp’ version ‘1.3.9’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘plyxp’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... ERROR
Running examples in ‘plyxp-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: vectors
> ### Title: S7 classes for vctrs and S4 Vectors
> ### Aliases: vectors class_vctrs class_s4_vctrs class_DF
> ### Keywords: datasets
> 
> ### ** Examples
> 
> # used for defining methods on S7 generics
> 
> S7::method(vec_slice, class_vctrs)
Error in as_dispatch(generic, class = class, object = object) : 
  Can't dispatch on unions; must be a concrete type
Calls: <Anonymous> -> as_dispatch
Execution halted
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 ERROR
See
  ‘/home/biocbuild/bbs-3.22-bioc/meat/plyxp.Rcheck/00check.log’
for details.

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###
### Running command:
###
###   /home/biocbuild/R/R/bin/R CMD INSTALL plyxp
###
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* installing to library ‘/home/biocbuild/R/R-4.5.0/site-library’
* installing *source* package ‘plyxp’ ...
** this is package ‘plyxp’ version ‘1.3.9’
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** byte-compile and prepare package for lazy loading
Creating a generic function for ‘rownames’ from package ‘base’ in package ‘plyxp’
Creating a generic function for ‘colnames’ from package ‘base’ in package ‘plyxp’
Creating a generic function for ‘nrow’ from package ‘base’ in package ‘plyxp’
Creating a generic function for ‘ncol’ from package ‘base’ in package ‘plyxp’
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (plyxp)

R version 4.5.0 (2025-04-11) -- "How About a Twenty-Six"
Copyright (C) 2025 The R Foundation for Statistical Computing
Platform: aarch64-unknown-linux-gnu

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> library("testthat")
> library("plyxp")

Attaching package: 'plyxp'

The following object is masked from 'package:stats':

    filter

> 
> test_check("plyxp")
[ FAIL 0 | WARN 0 | SKIP 6 | PASS 172 ]

══ Skipped tests (6) ═══════════════════════════════════════════════════════════
• On CRAN (6): 'test_printing.R:2:3', 'test_printing.R:6:3',
  'test_printing.R:13:3', 'test_printing.R:20:3', 'test_printing.R:24:3',
  'test_printing.R:28:3'

[ FAIL 0 | WARN 0 | SKIP 6 | PASS 172 ]
> 
> proc.time()
   user  system elapsed 
 18.923   1.741  20.734