Back to Multiple platform build/check report for BioC 3.23:   simplified   long
ABCDEFGHIJKLMNO[P]QRSTUVWXYZ

This page was generated on 2026-04-10 11:35 -0400 (Fri, 10 Apr 2026).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 24.04.4 LTS)x86_644.6.0 alpha (2026-04-05 r89794) 4917
kjohnson3macOS 13.7.7 Venturaarm64R Under development (unstable) (2026-03-26 r89717) -- "Unsuffered Consequences" 4629
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 1624/2388HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
planet 1.19.0  (landing page)
Victor Yuan
Snapshot Date: 2026-04-09 13:40 -0400 (Thu, 09 Apr 2026)
git_url: https://git.bioconductor.org/packages/planet
git_branch: devel
git_last_commit: 8c6ed45
git_last_commit_date: 2025-10-29 11:05:44 -0400 (Wed, 29 Oct 2025)
nebbiolo1Linux (Ubuntu 24.04.4 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
kjohnson3macOS 13.7.7 Ventura / arm64  OK    ERROR  skippedskipped
See other builds for planet in R Universe.

BUILD results for planet on kjohnson3

To the developers/maintainers of the planet package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/planet.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: planet
Version: 1.19.0
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data planet
StartedAt: 2026-04-09 16:52:55 -0400 (Thu, 09 Apr 2026)
EndedAt: 2026-04-09 16:53:14 -0400 (Thu, 09 Apr 2026)
EllapsedTime: 19.2 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data planet
###
##############################################################################
##############################################################################


* checking for file ‘planet/DESCRIPTION’ ... OK
* preparing ‘planet’:
* checking DESCRIPTION meta-information ... OK
* installing the package (it is needed to build vignettes)
* creating vignettes ... ERROR
--- re-building ‘planet.Rmd’ using rmarkdown

Quitting from planet.Rmd:326-334 [predict_pe]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `dyn.load()`:
! unable to load shared object '/Library/Frameworks/R.framework/Versions/4.6/Resources/library/igraph/libs/igraph.so':
  dlopen(/Library/Frameworks/R.framework/Versions/4.6/Resources/library/igraph/libs/igraph.so, 0x0006): Symbol not found: _R_getRegisteredNamespace
  Referenced from: <D5FEE207-EB8F-3FC2-BC24-84E97E708ECA> /Library/Frameworks/R.framework/Versions/4.6/Resources/library/igraph/libs/igraph.so
  Expected in:     <9885FFC9-0B1B-386C-8515-0CC182A63B5A> /Library/Frameworks/R.framework/Versions/4.6/Resources/lib/libR.dylib
---
Backtrace:
    ▆
 1. ├─x_test %>% predictPreeclampsia()
 2. ├─planet::predictPreeclampsia(.)
 3. └─base::loadNamespace(x)
 4.   ├─base::namespaceImport(...)
 5.   └─base::loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]])
 6.     └─base::library.dynam(lib, package, package.lib)
 7.       └─base::dyn.load(file, DLLpath = DLLpath, ...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'planet.Rmd' failed with diagnostics:
unable to load shared object '/Library/Frameworks/R.framework/Versions/4.6/Resources/library/igraph/libs/igraph.so':
  dlopen(/Library/Frameworks/R.framework/Versions/4.6/Resources/library/igraph/libs/igraph.so, 0x0006): Symbol not found: _R_getRegisteredNamespace
  Referenced from: <D5FEE207-EB8F-3FC2-BC24-84E97E708ECA> /Library/Frameworks/R.framework/Versions/4.6/Resources/library/igraph/libs/igraph.so
  Expected in:     <9885FFC9-0B1B-386C-8515-0CC182A63B5A> /Library/Frameworks/R.framework/Versions/4.6/Resources/lib/libR.dylib
--- failed re-building ‘planet.Rmd’

SUMMARY: processing the following file failed:
  ‘planet.Rmd’

Error: Vignette re-building failed.
Execution halted