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This page was generated on 2024-12-24 11:47 -0500 (Tue, 24 Dec 2024).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 24.04.1 LTS)x86_64R Under development (unstable) (2024-10-21 r87258) -- "Unsuffered Consequences" 4754
palomino7Windows Server 2022 Datacenterx64R Under development (unstable) (2024-10-26 r87273 ucrt) -- "Unsuffered Consequences" 4472
lconwaymacOS 12.7.1 Montereyx86_64R Under development (unstable) (2024-11-20 r87352) -- "Unsuffered Consequences" 4426
kjohnson3macOS 13.7.1 Venturaarm64R Under development (unstable) (2024-11-20 r87352) -- "Unsuffered Consequences" 4381
kunpeng2Linux (openEuler 22.03 LTS-SP1)aarch64R Under development (unstable) (2024-11-24 r87369) -- "Unsuffered Consequences" 4373
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 1591/2274HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
pRoloc 1.47.1  (landing page)
Laurent Gatto
Snapshot Date: 2024-12-23 13:40 -0500 (Mon, 23 Dec 2024)
git_url: https://git.bioconductor.org/packages/pRoloc
git_branch: devel
git_last_commit: 11d5560
git_last_commit_date: 2024-11-23 09:31:00 -0500 (Sat, 23 Nov 2024)
nebbiolo1Linux (Ubuntu 24.04.1 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
palomino7Windows Server 2022 Datacenter / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
lconwaymacOS 12.7.1 Monterey / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published
kjohnson3macOS 13.7.1 Ventura / arm64  OK    OK    OK    OK  UNNEEDED, same version is already published
kunpeng2Linux (openEuler 22.03 LTS-SP1) / aarch64  OK    OK    WARNINGS  


CHECK results for pRoloc on kunpeng2

To the developers/maintainers of the pRoloc package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/pRoloc.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.
- See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host.

raw results


Summary

Package: pRoloc
Version: 1.47.1
Command: /home/biocbuild/R/R/bin/R CMD check --install=check:pRoloc.install-out.txt --library=/home/biocbuild/R/R/site-library --no-vignettes --timings pRoloc_1.47.1.tar.gz
StartedAt: 2024-12-24 09:59:59 -0000 (Tue, 24 Dec 2024)
EndedAt: 2024-12-24 10:12:43 -0000 (Tue, 24 Dec 2024)
EllapsedTime: 764.0 seconds
RetCode: 0
Status:   WARNINGS  
CheckDir: pRoloc.Rcheck
Warnings: 6

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/R/R/bin/R CMD check --install=check:pRoloc.install-out.txt --library=/home/biocbuild/R/R/site-library --no-vignettes --timings pRoloc_1.47.1.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/home/biocbuild/bbs-3.21-bioc/meat/pRoloc.Rcheck’
* using R Under development (unstable) (2024-11-24 r87369)
* using platform: aarch64-unknown-linux-gnu
* R was compiled by
    aarch64-unknown-linux-gnu-gcc (GCC) 14.2.0
    GNU Fortran (GCC) 14.2.0
* running under: openEuler 24.03 (LTS)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘pRoloc/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘pRoloc’ version ‘1.47.1’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... INFO
Imports includes 27 non-default packages.
Importing from so many packages makes the package vulnerable to any of
them becoming unavailable.  Move as many as possible to Suggests and
use conditionally.
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘pRoloc’ can be installed ... WARNING
Found the following significant warnings:
  Warning: program compiled against libxml 212 using older 211
See ‘/home/biocbuild/bbs-3.21-bioc/meat/pRoloc.Rcheck/00install.out’ for details.
* used C++ compiler: ‘aarch64-unknown-linux-gnu-g++ (GCC) 14.2.0’
* checking installed package size ... INFO
  installed size is  5.0Mb
  sub-directories of 1Mb or more:
    R      1.2Mb
    libs   2.3Mb
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ...Warning: program compiled against libxml 212 using older 211
 OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... NOTE
Warning: program compiled against libxml 212 using older 211

A namespace must be able to be loaded with just the base namespace
loaded: otherwise if the namespace gets loaded by a saved object, the
session will be unable to start.

Probably some imports need to be declared in the NAMESPACE file.
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking whether startup messages can be suppressed ... NOTE
Warning: program compiled against libxml 212 using older 211

It looks like this package (or a package it requires) has a startup
message which cannot be suppressed: see ?packageStartupMessage.
* checking dependencies in R code ... NOTE
Warning: program compiled against libxml 212 using older 211
':::' calls which should be '::':
  ‘MLInterfaces:::.macroF1’ ‘MLInterfaces:::.precision’
  ‘MLInterfaces:::.recall’ ‘MLInterfaces:::es2df’
  See the note in ?`:::` about the use of this operator.
Unexported object imported by a ':::' call: ‘caret:::predict.plsda’
  See the note in ?`:::` about the use of this operator.
There are ::: calls to the package's namespace in its code. A package
  almost never needs to use ::: for its own objects:
  ‘getAttributesOfInterest0’ ‘getAttributesOfInterestX’
* checking S3 generic/method consistency ... WARNING
Warning: program compiled against libxml 212 using older 211
See section ‘Generic functions and methods’ in the ‘Writing R
Extensions’ manual.
* checking replacement functions ... WARNING
Warning: program compiled against libxml 212 using older 211
The argument of a replacement function which corresponds to the right
hand side must be named ‘value’.
* checking foreign function calls ... NOTE
Warning: program compiled against libxml 212 using older 211
See chapter ‘System and foreign language interfaces’ in the ‘Writing R
Extensions’ manual.
* checking R code for possible problems ... NOTE
Found the following possibly unsafe calls:
File ‘pRoloc/R/annotation.R’:
  unlockBinding("params", .pRolocEnv)

Warning: program compiled against libxml 212 using older 211
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... NOTE
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  GenRegRes-class.Rd: MSnSet-class
  MLearn-methods.Rd: MSnSet-class, xvalSpec, MLearn
  QSep-class.Rd: MSnSet-class, Versioned-class
  SpatProtVis-class.Rd: MSnSet-class
  clustDist.Rd: MSnSet-class
  getMarkerClasses.Rd: MSnSet-class
  getMarkers.Rd: MSnSet-class
  getPredictions.Rd: MSnSet-class
  highlightOnPlot.Rd: FeaturesOfInterest-class
  knnClassification.Rd: MSnSet-class, knn
  knnOptimisation.Rd: MSnSet-class, knn
  knntlClassification.Rd: MSnSet-class
  knntlOptimisation.Rd: MSnSet-class
  ksvmClassification.Rd: MSnSet-class, ksvm
  ksvmOptimisation.Rd: MSnSet-class, ksvm
  makeGoSet.Rd: MSnSet-class
  minMarkers.Rd: MSnSet-class
  move2Ds.Rd: MSnSetList
  nbClassification.Rd: MSnSet-class, naiveBayes
  nbOptimisation.Rd: MSnSet-class, naiveBayes
  nnetClassification.Rd: MSnSet-class, nnet
  nnetOptimisation.Rd: MSnSet-class, nnet
  orgQuants.Rd: MSnSet-class
  perTurboClassification.Rd: MSnSet-class, ginv
  perTurboOptimisation.Rd: MSnSet-class, ginv
  phenoDisco.Rd: filterNA
  plot2Ds.Rd: MSnSet-class, MSnSetList
  plsdaClassification.Rd: MSnSet-class, plsda
  plsdaOptimisation.Rd: MSnSet-class, plsda
  rfClassification.Rd: MSnSet-class, randomForest
  rfOptimisation.Rd: MSnSet-class, randomForest
  sampleMSnSet.Rd: MSnSet-class
  svmClassification.Rd: MSnSet-class, svm
  svmOptimisation.Rd: MSnSet-class, svm
  testMSnSet.Rd: MSnSet-class
  testMarkers.Rd: MSnSet-class
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
* checking for missing documentation entries ... WARNING
Warning: program compiled against libxml 212 using older 211
All user-level objects in a package should have documentation entries.
See chapter ‘Writing R documentation files’ in the ‘Writing R
Extensions’ manual.
* checking for code/documentation mismatches ... WARNING
Warning: program compiled against libxml 212 using older 211
Warning: program compiled against libxml 212 using older 211
Warning: program compiled against libxml 212 using older 211
* checking Rd \usage sections ... NOTE
Warning: program compiled against libxml 212 using older 211
The \usage entries for S3 methods should use the \method markup and not
their full name.
See chapter ‘Writing R documentation files’ in the ‘Writing R
Extensions’ manual.
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... WARNING
  Warning: program compiled against libxml 212 using older 211
* checking data for ASCII and uncompressed saves ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking compilation flags in Makevars ... OK
* checking for GNU extensions in Makefiles ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking use of PKG_*FLAGS in Makefiles ... OK
* checking compiled code ... NOTE
Note: information on .o files is not available
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
                         user system elapsed
perTurboClassification 15.989  0.140  16.169
nnetClassification      7.945  0.115   8.072
rfClassification        7.549  0.084   7.651
svmClassification       7.581  0.024   7.624
ClustDist-class         6.883  0.439  11.033
SpatProtVis-class       7.019  0.195   7.231
ClustDistList-class     6.270  0.260   8.599
ksvmClassification      6.288  0.188   6.488
clustDist               4.818  0.108   6.934
addGoAnnotations        4.673  0.089   7.863
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 6 WARNINGs, 8 NOTEs
See
  ‘/home/biocbuild/bbs-3.21-bioc/meat/pRoloc.Rcheck/00check.log’
for details.


Installation output

pRoloc.Rcheck/00install.out

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/R/R/bin/R CMD INSTALL pRoloc
###
##############################################################################
##############################################################################


* installing to library ‘/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library’
* installing *source* package ‘pRoloc’ ...
** using staged installation
** libs
using C++ compiler: ‘aarch64-unknown-linux-gnu-g++ (GCC) 14.2.0’
/opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-g++ -std=gnu++17 -I"/home/biocbuild/R/R/include" -DNDEBUG  -I'/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/Rcpp/include' -I'/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/RcppArmadillo/include' -I/usr/local/include    -fPIC  -g -O2  -Wall -Werror=format-security -DR_NO_REMAP -c RcppExports.cpp -o RcppExports.o
/opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-g++ -std=gnu++17 -I"/home/biocbuild/R/R/include" -DNDEBUG  -I'/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/Rcpp/include' -I'/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/RcppArmadillo/include' -I/usr/local/include    -fPIC  -g -O2  -Wall -Werror=format-security -DR_NO_REMAP -c dmvtCpp.cpp -o dmvtCpp.o
/opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-g++ -std=gnu++17 -I"/home/biocbuild/R/R/include" -DNDEBUG  -I'/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/Rcpp/include' -I'/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/RcppArmadillo/include' -I/usr/local/include    -fPIC  -g -O2  -Wall -Werror=format-security -DR_NO_REMAP -c pRoloc.cpp -o pRoloc.o
/opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-g++ -std=gnu++17 -shared -L/home/biocbuild/R/R/lib -L/usr/local/lib -o pRoloc.so RcppExports.o dmvtCpp.o pRoloc.o -lopenblas -lgfortran -lm -L/home/biocbuild/R/R/lib -lR
installing to /home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/00LOCK-pRoloc/00new/pRoloc/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
Warning: program compiled against libxml 212 using older 211
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
Warning: program compiled against libxml 212 using older 211
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
Warning: program compiled against libxml 212 using older 211
** testing if installed package keeps a record of temporary installation path
* DONE (pRoloc)

Tests output

pRoloc.Rcheck/tests/testthat.Rout


R Under development (unstable) (2024-11-24 r87369) -- "Unsuffered Consequences"
Copyright (C) 2024 The R Foundation for Statistical Computing
Platform: aarch64-unknown-linux-gnu

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> 
> # The setting of R_TESTS exists to work around an R bug. See
> # https://github.com/hadley/testthat/issues/144
> # We should remove it when the issue is resolved.
> Sys.setenv("R_TESTS" = "")
> 
> library("testthat")
> library("pRoloc")
Loading required package: MSnbase
Loading required package: BiocGenerics
Loading required package: generics

Attaching package: 'generics'

The following objects are masked from 'package:base':

    as.difftime, as.factor, as.ordered, intersect, is.element, setdiff,
    setequal, union


Attaching package: 'BiocGenerics'

The following objects are masked from 'package:stats':

    IQR, mad, sd, var, xtabs

The following objects are masked from 'package:base':

    Filter, Find, Map, Position, Reduce, anyDuplicated, aperm, append,
    as.data.frame, basename, cbind, colnames, dirname, do.call,
    duplicated, eval, evalq, get, grep, grepl, is.unsorted, lapply,
    mapply, match, mget, order, paste, pmax, pmax.int, pmin, pmin.int,
    rank, rbind, rownames, sapply, saveRDS, table, tapply, unique,
    unsplit, which.max, which.min

Loading required package: Biobase
Welcome to Bioconductor

    Vignettes contain introductory material; view with
    'browseVignettes()'. To cite Bioconductor, see
    'citation("Biobase")', and for packages 'citation("pkgname")'.

Loading required package: mzR
Loading required package: Rcpp
Loading required package: S4Vectors
Loading required package: stats4

Attaching package: 'S4Vectors'

The following object is masked from 'package:utils':

    findMatches

The following objects are masked from 'package:base':

    I, expand.grid, unname

Loading required package: ProtGenerics

Attaching package: 'ProtGenerics'

The following object is masked from 'package:stats':

    smooth


This is MSnbase version 2.33.2 
  Visit https://lgatto.github.io/MSnbase/ to get started.
 Consider switching to the 'R for Mass Spectrometry'
 packages - see https://RforMassSpectrometry.org for details.


Attaching package: 'MSnbase'

The following object is masked from 'package:base':

    trimws

Loading required package: MLInterfaces
Loading required package: annotate
Loading required package: AnnotationDbi
Loading required package: IRanges
Loading required package: XML

Attaching package: 'annotate'

The following object is masked from 'package:mzR':

    nChrom

Loading required package: cluster
Loading required package: BiocParallel
Warning: program compiled against libxml 212 using older 211

This is pRoloc version 1.47.1 
  Visit https://lgatto.github.io/pRoloc/ to get started.

> library("pRolocdata")

This is pRolocdata version 1.45.1.
Use 'pRolocdata()' to list available data sets.
> 
> test_check("pRoloc")
Object of class "SpatProtVis"
 Data: dunkley2006 
 Visualisation methods: PCA, MDS, kpca
Done.
Connecting to Biomart...
Object of class "AnnotationParams"
 Using the 'ENSEMBL_MART_ENSEMBL' BioMart database
 Using the 'hsapiens_gene_ensembl' dataset
 Using 'uniprotswissprot' as filter
 Created on Tue Dec 24 10:10:47 2024
GO Term Evidence Code
 Experimental Evidence Codes
  EXP: Inferred from Experiment
   IDA: Inferred from Direct Assay
   IPI: Inferred from Physical Interaction
   IMP: Inferred from Mutant Phenotype
   IGI: Inferred from Genetic Interaction
   IEP: Inferred from Expression Pattern
 Computational Analysis Evidence Codes
  ISS: Inferred from Sequence or Structural Similarity
   ISO: Inferred from Sequence Orthology
   ISA: Inferred from Sequence Alignment
   ISM: Inferred from Sequence Model
   IGC: Inferred from Genomic Context
   IBA: Inferred from Biological aspect of Ancestor
   IBD: Inferred from Biological aspect of Descendant
   IKR: Inferred from Key Residues
   IRD: Inferred from Rapid Divergence
   RCA: inferred from Reviewed Computational Analysis
 Author Statement Evidence Codes
   TAS: Traceable Author Statement
   NAS: Non-traceable Author Statement
 Curator Statement Evidence Codes
   IC: Inferred by Curator
   ND: No biological Data available
 Automatically-assigned Evidence Codes
   IEA: Inferred from Electronic Annotation
 Obsolete Evidence Codes
   NR: Not Recorded
Connecting to Biomart...
organelleMarkers
ORG1 ORG2 ORG3 ORG4 ORG5 
   3    2    3    1    1 
organelleMarkers
ORG1 ORG2 ORG3 ORG4 ORG5 
   5    2    1    1    1 
organelleMarkers
   ORG1 unknown 
      3       7 
organelleMarkers
   ORG1 unknown 
      2       8 
[1] "markers"
[1] "xx"
[1] "markers"
[1] "xx"
[1] "markers"
[1] "xx"
[1] "markers"
# weights:  269
initial  value 666.839513 
iter  10 value 207.573433
iter  20 value 34.513121
iter  30 value 1.438035
iter  40 value 0.496168
iter  50 value 0.419018
iter  60 value 0.386372
iter  70 value 0.360129
iter  80 value 0.324298
iter  90 value 0.294123
iter 100 value 0.252996
final  value 0.252996 
stopped after 100 iterations
[1] "xx"
# weights:  269
initial  value 666.839513 
iter  10 value 207.573433
iter  20 value 34.513121
iter  30 value 1.438035
iter  40 value 0.496168
iter  50 value 0.419018
iter  60 value 0.386372
iter  70 value 0.360129
iter  80 value 0.324298
iter  90 value 0.294123
iter 100 value 0.252996
final  value 0.252996 
stopped after 100 iterations
[1] "markers"
[1] "xx"
[1] "pd.markers"
Common markers:  0 
Unique x markers:  49 
Unique y markers:  34 
Common unkowns:  11 
Unique x unknowns:  40 
Unique y unknowns:  66 
               my
mx              ER lumen ER membrane Golgi Mitochondrion  PM Plastid Ribosome
  ER lumen            14           0     0             0   0       0        0
  ER membrane          0          45     0             0   0       0        0
  Golgi                0           0    28             0   0       0        0
  Mitochondrion        0           0     0            55   0       0        0
  PM                   0           0     0             0  46       0        0
  Plastid              0           0     0             0   0      20        0
  Ribosome             0           0     0             0   0       0       19
  TGN                  0           0     0             0   0       0        0
  unknown              0           0     0             0   0       0        0
  vacuole              0           0     0             0   0       0        0
               my
mx              TGN unknown vacuole
  ER lumen        0       0       0
  ER membrane     0       0       0
  Golgi           0       0       0
  Mitochondrion   0       0       0
  PM              0       0       0
  Plastid         0       0       0
  Ribosome        0       0       0
  TGN            13       0       0
  unknown         0     428       0
  vacuole         0       0      21
[ FAIL 0 | WARN 7 | SKIP 0 | PASS 146 ]

[ FAIL 0 | WARN 7 | SKIP 0 | PASS 146 ]
> 
> proc.time()
   user  system elapsed 
140.207   2.078 149.581 

Example timings

pRoloc.Rcheck/pRoloc-Ex.timings

nameusersystemelapsed
AnnotationParams-class0.3180.0284.587
ClustDist-class 6.883 0.43911.033
ClustDistList-class6.2700.2608.599
GenRegRes-class0.0010.0000.001
QSep-class0.4840.0320.517
SpatProtVis-class7.0190.1957.231
addGoAnnotations4.6730.0897.863
addMarkers0.2390.0080.248
checkFeatureNamesOverlap0.4600.0160.481
checkFvarOverlap0.0330.0120.045
chi2-methods0.0050.0000.005
classWeights0.1460.0000.146
clustDist4.8180.1086.934
empPvalues0.1010.0030.105
fDataToUnknown0.0550.0050.060
filterBinMSnSet0.1890.0280.218
filterZeroCols0.1300.0040.135
getGOFromFeatures0.4560.0200.479
getMarkerClasses0.0470.0000.047
getMarkers0.0470.0040.050
getPredictions0.3240.0190.344
getStockcol0.1110.0040.116
goIdToTerm2.3200.0192.344
highlightOnPlot0.4000.0080.410
knnClassification1.5950.0241.622
knntlClassification000
ksvmClassification6.2880.1886.488
makeGoSet0.8410.0320.875
markerMSnSet0.3190.0040.323
markers0.0710.0070.078
minMarkers0.0590.0000.059
mixing_posterior_check000
move2Ds2.7460.0442.794
mrkConsProfiles0.2630.0240.287
mrkHClust0.0860.0080.095
nbClassification3.3520.0603.418
nicheMeans2D0.0000.0000.001
nndist-methods0.2660.0080.274
nnetClassification7.9450.1158.072
orgQuants0.2670.0120.280
pRolocmarkers0.0240.0080.039
perTurboClassification15.989 0.14016.169
phenoDisco000
plot2D1.6450.0671.723
plot2Ds0.4720.0080.484
plotConsProfiles0.5320.0200.556
plotDist0.2460.0040.253
plsdaClassification0.0000.0000.001
rfClassification7.5490.0847.651
sampleMSnSet0.0730.0040.077
showGOEvidenceCodes0.0010.0000.001
spatial2D000
svmClassification7.5810.0247.624
testMSnSet0.3390.0000.339
testMarkers0.0360.0040.040
thetas0.010.000.01
zerosInBinMSnSet1.9860.0642.057