Multiple platform build/check report for BioC 3.22 - BUILD results for nullranges on nebbiolo2

Hostname	OS	Arch (*)	R version	Installed pkgs
nebbiolo2	Linux (Ubuntu 24.04.2 LTS)	x86_64	4.5.1 (2025-06-13) -- "Great Square Root"	4795
palomino8	Windows Server 2022 Datacenter	x64	4.5.1 (2025-06-13 ucrt) -- "Great Square Root"	4534
lconway	macOS 12.7.1 Monterey	x86_64	4.5.1 (2025-06-13) -- "Great Square Root"	4577
kjohnson3	macOS 13.7.1 Ventura	arm64	4.5.1 Patched (2025-06-14 r88325) -- "Great Square Root"	4518
taishan	Linux (openEuler 24.03 LTS)	aarch64	4.5.0 (2025-04-11) -- "How About a Twenty-Six"	4512
Click on any hostname to see more info about the system (e.g. compilers) () as reported by 'uname -p', except on Windows and Mac OS X*

BUILD results for nullranges on nebbiolo2

To the developers/maintainers of the nullranges package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/nullranges.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: nullranges

Version: 1.15.1

Command: /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data --md5 nullranges

StartedAt: 2025-07-25 20:36:14 -0400 (Fri, 25 Jul 2025)

EndedAt: 2025-07-25 20:38:05 -0400 (Fri, 25 Jul 2025)

EllapsedTime: 111.2 seconds

RetCode: 1

Status: ERROR

PackageFile: None

PackageFileSize: NA

Command output

##############################################################################
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### Running command:
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###   /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data --md5 nullranges
###
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* checking for file ‘nullranges/DESCRIPTION’ ... OK
* preparing ‘nullranges’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘bootRanges.Rmd’ using rmarkdown

Quitting from bootRanges.Rmd:249-262 [unnamed-chunk-5]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `keepStandardChromosomes()`:
! could not find function "keepStandardChromosomes"
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'bootRanges.Rmd' failed with diagnostics:
could not find function "keepStandardChromosomes"
--- failed re-building ‘bootRanges.Rmd’

--- re-building ‘matchRanges.Rmd’ using rmarkdown
--- finished re-building ‘matchRanges.Rmd’

--- re-building ‘matching_ginteractions.Rmd’ using rmarkdown
--- finished re-building ‘matching_ginteractions.Rmd’

--- re-building ‘matching_granges.Rmd’ using rmarkdown
--- finished re-building ‘matching_granges.Rmd’

--- re-building ‘matching_pool_set.Rmd’ using rmarkdown
--- finished re-building ‘matching_pool_set.Rmd’

--- re-building ‘nullranges.Rmd’ using rmarkdown
--- finished re-building ‘nullranges.Rmd’

SUMMARY: processing the following file failed:
  ‘bootRanges.Rmd’

Error: Vignette re-building failed.
Execution halted