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This page was generated on 2025-04-09 11:55 -0400 (Wed, 09 Apr 2025).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 24.04.1 LTS)x86_644.5.0 beta (2025-04-02 r88102) -- "How About a Twenty-Six" 4737
palomino8Windows Server 2022 Datacenterx644.5.0 RC (2025-04-03 r88103 ucrt) -- "How About a Twenty-Six" 4524
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 1431/2335HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
netDx 1.19.1  (landing page)
Shraddha Pai
Snapshot Date: 2025-04-08 13:00 -0400 (Tue, 08 Apr 2025)
git_url: https://git.bioconductor.org/packages/netDx
git_branch: devel
git_last_commit: 11cd9eb
git_last_commit_date: 2024-12-17 11:22:06 -0400 (Tue, 17 Dec 2024)
nebbiolo2Linux (Ubuntu 24.04.1 LTS) / x86_64  OK    ERROR  skipped
palomino8Windows Server 2022 Datacenter / x64see GPU-enabled build/check report here

BUILD results for netDx on nebbiolo2

To the developers/maintainers of the netDx package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/netDx.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: netDx
Version: 1.19.1
Command: /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data --md5 netDx
StartedAt: 2025-04-08 18:26:48 -0400 (Tue, 08 Apr 2025)
EndedAt: 2025-04-08 18:30:31 -0400 (Tue, 08 Apr 2025)
EllapsedTime: 223.4 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
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###
### Running command:
###
###   /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data --md5 netDx
###
##############################################################################
##############################################################################


* checking for file ‘netDx/DESCRIPTION’ ... OK
* preparing ‘netDx’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘ThreeWayClassifier.Rmd’ using rmarkdown

Quitting from ThreeWayClassifier.Rmd:301-322 [unnamed-chunk-24]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `file()`:
! cannot open the connection
---
Backtrace:
    x
 1. +-base::suppressMessages(...)
 2. | \-base::withCallingHandlers(...)
 3. \-netDx::buildPredictor(...)
 4.   +-base::grepl(pattern = ",", readLines(tmp, n = 6))
 5.   | \-base::is.factor(x)
 6.   \-base::readLines(tmp, n = 6)
 7.     \-base::file(con, "r")
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'ThreeWayClassifier.Rmd' failed with diagnostics:
cannot open the connection
--- failed re-building 'ThreeWayClassifier.Rmd'

SUMMARY: processing the following file failed:
  'ThreeWayClassifier.Rmd'

Error: Vignette re-building failed.
Execution halted