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###
### Running command:
###
###   /home/biocbuild/bbs-3.21-bioc/R/bin/R CMD check --install=check:multiMiR.install-out.txt --library=/home/biocbuild/bbs-3.21-bioc/R/site-library --timings multiMiR_1.29.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.21-bioc/meat/multiMiR.Rcheck’
* using R Under development (unstable) (2024-10-21 r87258)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0
    GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0
* running under: Ubuntu 24.04.1 LTS
* using session charset: UTF-8
* checking for file ‘multiMiR/DESCRIPTION’ ... OK
* this is package ‘multiMiR’ version ‘1.29.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘multiMiR’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... NOTE
License stub is invalid DCF.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking whether startup messages can be suppressed ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... ERROR
Running examples in ‘multiMiR-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: get_multimir
> ### Title: Get microRNA-target Interactions from the multiMiR Package
> ### Aliases: get_multimir get.multimir
> ### Keywords: database utilities
> 
> ### ** Examples
> 
> 
>   ## search 'hsa-miR-18a-3p' in validated interactions in human
>   example1 <- get_multimir(mirna='hsa-miR-18a-3p', summary=TRUE)
Searching mirecords ...
Searching mirtarbase ...
Searching tarbase ...
Error in `map()`:
ℹ In index: 3.
ℹ With name: tarbase.
Caused by error:
! Internal Server Error
Backtrace:
     ▆
  1. ├─multiMiR::get_multimir(mirna = "hsa-miR-18a-3p", summary = TRUE)
  2. │ └─purrr::map(queries, query_multimir, org = org, add.link = add.link, use.tibble = use.tibble)
  3. │   └─purrr:::map_("list", .x, .f, ..., .progress = .progress)
  4. │     ├─purrr:::with_indexed_errors(...)
  5. │     │ └─base::withCallingHandlers(...)
  6. │     ├─purrr:::call_with_cleanup(...)
  7. │     └─multiMiR (local) .f(.x[[i]], ...)
  8. │       └─multiMiR::search_multimir(x$query)
  9. │         └─multiMiR:::submit_request(...)
 10. │           └─RCurl::postForm(url, query = query, ..., .opts = myOpts)
 11. │             └─RCurl:::stop.if.HTTP.error(http.header)
 12. │               └─base::stop(err)
 13. └─purrr (local) `<fn>`(`<Intr_S_E>`)
 14.   └─cli::cli_abort(...)
 15.     └─rlang::abort(...)
Execution halted
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’
 ERROR
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  > library(multiMiR)
  Error: package or namespace load failed for 'multiMiR':
   .onLoad failed in loadNamespace() for 'multiMiR', details:
    call: NULL
    error: Internal Server Error
  Execution halted
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... ERROR
Error(s) in re-building vignettes:
  ...
--- re-building ‘multiMiR.Rmd’ using rmarkdown

Quitting from lines 96-99 [multimir_dbInfoVersions] (multiMiR.Rmd)
Error: processing vignette 'multiMiR.Rmd' failed with diagnostics:
package or namespace load failed for 'multiMiR':
 .onLoad failed in loadNamespace() for 'multiMiR', details:
  call: NULL
  error: Internal Server Error

--- failed re-building ‘multiMiR.Rmd’

SUMMARY: processing the following file failed:
  ‘multiMiR.Rmd’

Error: Vignette re-building failed.
Execution halted

* checking PDF version of manual ... OK
* DONE

Status: 3 ERRORs, 1 NOTE
See
  ‘/home/biocbuild/bbs-3.21-bioc/meat/multiMiR.Rcheck/00check.log’
for details.

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###
### Running command:
###
###   /home/biocbuild/bbs-3.21-bioc/R/bin/R CMD INSTALL multiMiR
###
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* installing to library ‘/home/biocbuild/bbs-3.21-bioc/R/site-library’
* installing *source* package ‘multiMiR’ ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (multiMiR)

R Under development (unstable) (2024-10-21 r87258) -- "Unsuffered Consequences"
Copyright (C) 2024 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> library(testthat)
> library(multiMiR)
Error: package or namespace load failed for 'multiMiR':
 .onLoad failed in loadNamespace() for 'multiMiR', details:
  call: NULL
  error: Internal Server Error
Execution halted