Lieven Clement
| Snapshot Date: 2026-04-17 13:40 -0400 (Fri, 17 Apr 2026) |
| git_url: https://git.bioconductor.org/packages/msqrob2 |
| git_branch: devel |
| git_last_commit: 56df1a3 |
| git_last_commit_date: 2026-04-14 03:35:32 -0400 (Tue, 14 Apr 2026) |
| Back to Multiple platform build/check report for BioC 3.23: simplified long |
|
This page was generated on 2026-04-18 11:37 -0400 (Sat, 18 Apr 2026).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 24.04.4 LTS) | x86_64 | 4.6.0 alpha (2026-04-05 r89794) | 4957 |
| kjohnson3 | macOS 13.7.7 Ventura | arm64 | 4.6.0 alpha (2026-04-08 r89818) | 4686 |
| kunpeng2 | Linux (openEuler 24.03 LTS) | aarch64 | R Under development (unstable) (2025-02-19 r87757) -- "Unsuffered Consequences" | 4627 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 1417/2404 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| msqrob2 1.19.1 (landing page) Lieven Clement
| nebbiolo1 | Linux (Ubuntu 24.04.4 LTS) / x86_64 | OK | OK | OK | | ||||||||
| kjohnson3 | macOS 13.7.7 Ventura / arm64 | OK | OK | OK | OK | | ||||||||
| kunpeng2 | Linux (openEuler 24.03 LTS) / aarch64 | OK | ERROR | skipped | ||||||||||
| See other builds for msqrob2 in R Universe. | ||||||||||||||
|
To the developers/maintainers of the msqrob2 package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/msqrob2.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. - See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host. |
| Package: msqrob2 |
| Version: 1.19.1 |
| Command: /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data msqrob2 |
| StartedAt: 2026-04-17 00:46:11 -0000 (Fri, 17 Apr 2026) |
| EndedAt: 2026-04-17 00:50:48 -0000 (Fri, 17 Apr 2026) |
| EllapsedTime: 277.1 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
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### Running command:
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### /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data msqrob2
###
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* checking for file ‘msqrob2/DESCRIPTION’ ... OK
* preparing ‘msqrob2’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘cptac.Rmd’ using rmarkdown
--- finished re-building ‘cptac.Rmd’
--- re-building ‘staesSpikein-DIA-NN.Rmd’ using rmarkdown
Quitting from staesSpikein-DIA-NN.Rmd:85-91 [import_data]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error:
! NotImplemented: Support for codec 'zstd' not built
In order to read this file, you will need to reinstall arrow with additional features enabled.
Set one of these environment variables before installing:
* Sys.setenv(LIBARROW_MINIMAL = "false") (for all optional features, including 'zstd')
* Sys.setenv(ARROW_WITH_ZSTD = "ON") (for just 'zstd')
See https://arrow.apache.org/docs/r/articles/install.html for details
---
Backtrace:
▆
1. └─arrow::read_parquet(precursorFile)
2. └─base::tryCatch(reader$ReadTable(), error = read_compressed_error)
3. └─base (local) tryCatchList(expr, classes, parentenv, handlers)
4. └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
5. └─value[[3L]](cond)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'staesSpikein-DIA-NN.Rmd' failed with diagnostics:
NotImplemented: Support for codec 'zstd' not built
In order to read this file, you will need to reinstall arrow with additional features enabled.
Set one of these environment variables before installing:
* Sys.setenv(LIBARROW_MINIMAL = "false") (for all optional features, including 'zstd')
* Sys.setenv(ARROW_WITH_ZSTD = "ON") (for just 'zstd')
See https://arrow.apache.org/docs/r/articles/install.html for details
--- failed re-building ‘staesSpikein-DIA-NN.Rmd’
--- re-building ‘staesSpikein-spectronaut.Rmd’ using rmarkdown
--- finished re-building ‘staesSpikein-spectronaut.Rmd’
SUMMARY: processing the following file failed:
‘staesSpikein-DIA-NN.Rmd’
Error: Vignette re-building failed.
Execution halted