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This page was generated on 2024-12-23 11:45 -0500 (Mon, 23 Dec 2024).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 24.04.1 LTS)x86_64R Under development (unstable) (2024-10-21 r87258) -- "Unsuffered Consequences" 4754
palomino7Windows Server 2022 Datacenterx64R Under development (unstable) (2024-10-26 r87273 ucrt) -- "Unsuffered Consequences" 4472
lconwaymacOS 12.7.1 Montereyx86_64R Under development (unstable) (2024-11-20 r87352) -- "Unsuffered Consequences" 4426
kjohnson3macOS 13.7.1 Venturaarm64R Under development (unstable) (2024-11-20 r87352) -- "Unsuffered Consequences" 4381
kunpeng2Linux (openEuler 22.03 LTS-SP1)aarch64R Under development (unstable) (2024-11-24 r87369) -- "Unsuffered Consequences" 4372
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 1303/2274HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
mosbi 1.13.0  (landing page)
Tim Daniel Rose
Snapshot Date: 2024-12-22 13:40 -0500 (Sun, 22 Dec 2024)
git_url: https://git.bioconductor.org/packages/mosbi
git_branch: devel
git_last_commit: ba952ac
git_last_commit_date: 2024-10-29 11:06:10 -0500 (Tue, 29 Oct 2024)
nebbiolo1Linux (Ubuntu 24.04.1 LTS) / x86_64  OK    OK    WARNINGS  UNNEEDED, same version is already published
palomino7Windows Server 2022 Datacenter / x64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published
lconwaymacOS 12.7.1 Monterey / x86_64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published
kjohnson3macOS 13.7.1 Ventura / arm64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published
kunpeng2Linux (openEuler 22.03 LTS-SP1) / aarch64  OK    OK    WARNINGS  


CHECK results for mosbi on kjohnson3

To the developers/maintainers of the mosbi package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/mosbi.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: mosbi
Version: 1.13.0
Command: _R_CHECK_FORCE_SUGGESTS_=0 /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:mosbi.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings mosbi_1.13.0.tar.gz
StartedAt: 2024-12-22 20:19:00 -0500 (Sun, 22 Dec 2024)
EndedAt: 2024-12-22 20:19:16 -0500 (Sun, 22 Dec 2024)
EllapsedTime: 15.2 seconds
RetCode: 0
Status:   WARNINGS  
CheckDir: mosbi.Rcheck
Warnings: 1

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   _R_CHECK_FORCE_SUGGESTS_=0 /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:mosbi.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings mosbi_1.13.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/Users/biocbuild/bbs-3.21-bioc/meat/mosbi.Rcheck’
* using R Under development (unstable) (2024-11-20 r87352)
* using platform: aarch64-apple-darwin20
* R was compiled by
    Apple clang version 14.0.0 (clang-1400.0.29.202)
    GNU Fortran (GCC) 12.2.0
* running under: macOS Ventura 13.7.1
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘mosbi/DESCRIPTION’ ... OK
* this is package ‘mosbi’ version ‘1.13.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... INFO
Package suggested but not available for checking: ‘runibic’
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... NOTE
Found the following hidden files and directories:
  .BBSoptions
These were most likely included in error. See section ‘Package
structure’ in the ‘Writing R Extensions’ manual.
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘mosbi’ can be installed ... WARNING
Found the following significant warnings:
  attr_graph.cpp:123:6: warning: use of bitwise '&' with boolean operands [-Wbitwise-instead-of-logical]
  attribute_overlap.cpp:175:6: warning: use of bitwise '&' with boolean operands [-Wbitwise-instead-of-logical]
  bicluster_methods.cpp:125:6: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical]
  bicluster_methods.cpp:130:18: warning: loop variable 'i' of type 'const int &' binds to a temporary constructed from type 'typename storage_type<14>::type &' (aka 'double &') [-Wrange-loop-construct]
  bicluster_methods.cpp:137:18: warning: loop variable 'j' of type 'const int &' binds to a temporary constructed from type 'typename storage_type<14>::type &' (aka 'double &') [-Wrange-loop-construct]
  bicluster_methods.cpp:144:6: warning: use of bitwise '&' with boolean operands [-Wbitwise-instead-of-logical]
  bicluster_methods.cpp:150:6: warning: use of bitwise '&' with boolean operands [-Wbitwise-instead-of-logical]
  bicluster_methods.cpp:214:8: warning: use of bitwise '&' with boolean operands [-Wbitwise-instead-of-logical]
  full_graph.cpp:111:6: warning: use of bitwise '&' with boolean operands [-Wbitwise-instead-of-logical]
  misc.cpp:20:12: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical]
  network_edge_strength.cpp:86:6: warning: use of bitwise '&' with boolean operands [-Wbitwise-instead-of-logical]
See ‘/Users/biocbuild/bbs-3.21-bioc/meat/mosbi.Rcheck/00install.out’ for details.
* used C++ compiler: ‘Apple clang version 15.0.0 (clang-1500.1.0.2.5)’
* used SDK: ‘MacOSX11.3.sdk’
* checking C++ specification ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... NOTE
There are ::: calls to the package's namespace in its code. A package
  almost never needs to use ::: for its own objects:
  ‘get_communities’
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking compilation flags in Makevars ... OK
* checking for GNU extensions in Makefiles ... INFO
GNU make is a SystemRequirements.
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking use of PKG_*FLAGS in Makefiles ... OK
* checking compiled code ... NOTE
Note: information on .o files is not available
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 WARNING, 3 NOTEs
See
  ‘/Users/biocbuild/bbs-3.21-bioc/meat/mosbi.Rcheck/00check.log’
for details.


Installation output

mosbi.Rcheck/00install.out

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL mosbi
###
##############################################################################
##############################################################################


* installing to library ‘/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library’
* installing *source* package ‘mosbi’ ...
** using staged installation
** libs
using C++ compiler: ‘Apple clang version 15.0.0 (clang-1500.1.0.2.5)’
using C++17
using SDK: ‘MacOSX11.3.sdk’
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/BH/include' -I'/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/RcppParallel/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -DR_NO_REMAP -c RcppExports.cpp -o RcppExports.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/BH/include' -I'/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/RcppParallel/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -DR_NO_REMAP -c attr_graph.cpp -o attr_graph.o
attr_graph.cpp:123:6: warning: use of bitwise '&' with boolean operands [-Wbitwise-instead-of-logical]
  if((rownames(m)!=R_NilValue)&(colnames(m)!=R_NilValue)){
     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
                              &&
attr_graph.cpp:123:6: note: cast one or both operands to int to silence this warning
1 warning generated.
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/BH/include' -I'/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/RcppParallel/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -DR_NO_REMAP -c attributeConnector.cpp -o attributeConnector.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/BH/include' -I'/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/RcppParallel/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -DR_NO_REMAP -c attribute_overlap.cpp -o attribute_overlap.o
attribute_overlap.cpp:175:6: warning: use of bitwise '&' with boolean operands [-Wbitwise-instead-of-logical]
  if((rownames(occurance_m)!=R_NilValue)&(colnames(occurance_m)!=R_NilValue)){
     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
                                        &&
attribute_overlap.cpp:175:6: note: cast one or both operands to int to silence this warning
1 warning generated.
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/BH/include' -I'/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/RcppParallel/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -DR_NO_REMAP -c bicluster_methods.cpp -o bicluster_methods.o
bicluster_methods.cpp:125:6: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical]
  if((row1.length()>row2.length())|(col1.length()>col2.length())){
     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
                                  ||
bicluster_methods.cpp:125:6: note: cast one or both operands to int to silence this warning
bicluster_methods.cpp:130:18: warning: loop variable 'i' of type 'const int &' binds to a temporary constructed from type 'typename storage_type<14>::type &' (aka 'double &') [-Wrange-loop-construct]
  for(const int& i : row1){
                 ^
bicluster_methods.cpp:130:7: note: use non-reference type 'int' to make construction explicit or type 'const typename storage_type<14>::type &' (aka 'const double &') to prevent copying
  for(const int& i : row1){
      ^~~~~~~~~~~~~~
bicluster_methods.cpp:137:18: warning: loop variable 'j' of type 'const int &' binds to a temporary constructed from type 'typename storage_type<14>::type &' (aka 'double &') [-Wrange-loop-construct]
  for(const int& j : col1){
                 ^
bicluster_methods.cpp:137:7: note: use non-reference type 'int' to make construction explicit or type 'const typename storage_type<14>::type &' (aka 'const double &') to prevent copying
  for(const int& j : col1){
      ^~~~~~~~~~~~~~
bicluster_methods.cpp:144:6: warning: use of bitwise '&' with boolean operands [-Wbitwise-instead-of-logical]
  if((irow==row1.length())&(irow==row2.length())&
     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
bicluster_methods.cpp:144:6: note: cast one or both operands to int to silence this warning
bicluster_methods.cpp:144:6: warning: use of bitwise '&' with boolean operands [-Wbitwise-instead-of-logical]
  if((irow==row1.length())&(irow==row2.length())&
     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
                                                &&
bicluster_methods.cpp:144:6: note: cast one or both operands to int to silence this warning
bicluster_methods.cpp:144:6: warning: use of bitwise '&' with boolean operands [-Wbitwise-instead-of-logical]
  if((irow==row1.length())&(irow==row2.length())&
     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
                          &&
bicluster_methods.cpp:144:6: note: cast one or both operands to int to silence this warning
bicluster_methods.cpp:150:6: warning: use of bitwise '&' with boolean operands [-Wbitwise-instead-of-logical]
  if((irow==row1.length())&(icol==col1.length())){
     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
                          &&
bicluster_methods.cpp:150:6: note: cast one or both operands to int to silence this warning
bicluster_methods.cpp:214:8: warning: use of bitwise '&' with boolean operands [-Wbitwise-instead-of-logical]
    if((!iinv(b, ereaseV))&(!iinv(b, identicalV))){
       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
                          &&
bicluster_methods.cpp:214:8: note: cast one or both operands to int to silence this warning
8 warnings generated.
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/BH/include' -I'/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/RcppParallel/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -DR_NO_REMAP -c boost_graph.cpp -o boost_graph.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/BH/include' -I'/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/RcppParallel/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -DR_NO_REMAP -c boost_write.cpp -o boost_write.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/BH/include' -I'/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/RcppParallel/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -DR_NO_REMAP -c distance_matrix.cpp -o distance_matrix.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/BH/include' -I'/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/RcppParallel/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -DR_NO_REMAP -c extractBF.cpp -o extractBF.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/BH/include' -I'/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/RcppParallel/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -DR_NO_REMAP -c extractQUBIC2.cpp -o extractQUBIC2.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/BH/include' -I'/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/RcppParallel/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -DR_NO_REMAP -c full_graph.cpp -o full_graph.o
full_graph.cpp:111:6: warning: use of bitwise '&' with boolean operands [-Wbitwise-instead-of-logical]
  if((rownames(m)!=R_NilValue)&(colnames(m)!=R_NilValue)){
     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
                              &&
full_graph.cpp:111:6: note: cast one or both operands to int to silence this warning
1 warning generated.
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/BH/include' -I'/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/RcppParallel/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -DR_NO_REMAP -c misc.cpp -o misc.o
misc.cpp:20:12: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical]
  return(!((colnames(m)==R_NilValue)|(rownames(m)==R_NilValue)));
          ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
                                    ||
misc.cpp:20:12: note: cast one or both operands to int to silence this warning
1 warning generated.
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/BH/include' -I'/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/RcppParallel/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -DR_NO_REMAP -c network_edge_strength.cpp -o network_edge_strength.o
network_edge_strength.cpp:86:6: warning: use of bitwise '&' with boolean operands [-Wbitwise-instead-of-logical]
  if((rownames(mat)!=R_NilValue)&(colnames(mat)!=R_NilValue)){
     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
                                &&
network_edge_strength.cpp:86:6: note: cast one or both operands to int to silence this warning
1 warning generated.
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/BH/include' -I'/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/RcppParallel/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -DR_NO_REMAP -c sample_biclusters.cpp -o sample_biclusters.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/BH/include' -I'/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/RcppParallel/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -DR_NO_REMAP -c write_matrix.cpp -o write_matrix.o
clang++ -arch arm64 -std=gnu++17 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/arm64/lib -o mosbi.so RcppExports.o attr_graph.o attributeConnector.o attribute_overlap.o bicluster_methods.o boost_graph.o boost_write.o distance_matrix.o extractBF.o extractQUBIC2.o full_graph.o misc.o network_edge_strength.o sample_biclusters.o write_matrix.o -L/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/RcppParallel/lib -ltbb -ltbbmalloc -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/00LOCK-mosbi/00new/mosbi/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (mosbi)

Tests output

mosbi.Rcheck/tests/testthat.Rout


R Under development (unstable) (2024-11-20 r87352) -- "Unsuffered Consequences"
Copyright (C) 2024 The R Foundation for Statistical Computing
Platform: aarch64-apple-darwin20

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> library(testthat)
> library(mosbi)

Attaching package: 'mosbi'

The following object is masked from 'package:testthat':

    has_names

> 
> test_check("mosbi")
6 6
[ FAIL 0 | WARN 2 | SKIP 0 | PASS 13 ]

[ FAIL 0 | WARN 2 | SKIP 0 | PASS 13 ]
> 
> proc.time()
   user  system elapsed 
  0.384   0.048   0.429 

Example timings

mosbi.Rcheck/mosbi-Ex.timings

nameusersystemelapsed
NoBFBiclusters000
algohistogram0.0010.0010.001
apply_threshold-bicluster_net-method000
apply_threshold-cooccurrence_net-method000
apply_threshold000
attr_overlap000
attributeConnector0.0000.0010.000
attribute_graph0.0000.0000.001
bicluster-class0.0000.0000.001
bicluster_heatmap-bicluster-matrix-method0.0100.0000.011
bicluster_heatmap0.0020.0000.002
bicluster_net-class0.0000.0000.001
bicluster_net_to_igraph-bicluster_net-method000
bicluster_net_to_igraph000
bicluster_network0.0000.0010.000
bicluster_to_matrix000
check_names000
clean_bicluster_list0.0010.0000.000
colhistogram000
cooccurrence_net-class000
cooccurrence_net_to_igraph-cooccurrence_net-method000
cooccurrence_net_to_igraph0.0000.0000.001
cpp_matrix_subsetting000
detect_elements0.0000.0000.001
dim-bicluster-method000
distance_matrix0.0010.0000.000
ensemble_biclusters000
feature_louvain_overlap000
feature_network000
filter_bicluster_size0.0010.0000.000
filter_biclusters000
filter_matrix000
filter_subsets000
full_graph0.0010.0000.000
getAkmbiclustClusters000
getBFCluster000
getBicAREbiclusters0.0000.0000.001
getBiclustClusters000
getBiclustpyClusters000
getFabiaClusters000
getIsaClusters000
getQUBIC2biclusters000
get_adjacency-bicluster_net-method000
get_adjacency000
get_algorithms000
get_bic_net_algorithms-bicluster_net-method000
get_bic_net_algorithms000
get_biclusters000
get_louvain_communities-bicluster_net-method000
get_louvain_communities-cooccurrence_net-method000
get_louvain_communities000
getallBFClusters000
has_names000
is_subset_or_identical000
mouse_data000
network_edge_strength000
network_edge_strength_float000
node_size000
occurance_matrix000
occurance_table000
p_overlap000
p_overlap_2d000
p_overlap_2d_higher000
p_overlap_higher000
plot-bicluster_net-missing-method0.0000.0010.000
plot-cooccurrence_net-missing-method000
plot_algo_network000
plot_piechart_bicluster_network000
randomize_matrix0.0010.0000.000
replace_threshold000
replace_values0.0000.0000.001
replace_values_float0.0000.0010.000
rowhistogram000
run_akmbiclust0.0000.0000.001
run_bimax000
run_cc000
run_fabia000
run_isa000
run_plaid000
run_qubic000
run_quest000
run_spectral000
run_unibic000
run_xmotifs000
sample_biclusters000
select_biclusters_from_bicluster_network-bicluster_net-list-method000
select_biclusters_from_bicluster_network000
set_bicluster_names0.0010.0000.000
similarity_matrix000
transpose_bicluster0.0010.0000.000
validate_bicluster000
write_graphml000
write_matrix0.0000.0010.000
zero_subsetting000