Back to Multiple platform build/check report for BioC 3.22: simplified long |
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This page was generated on 2025-08-30 12:05 -0400 (Sat, 30 Aug 2025).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
nebbiolo2 | Linux (Ubuntu 24.04.3 LTS) | x86_64 | 4.5.1 (2025-06-13) -- "Great Square Root" | 4824 |
lconway | macOS 12.7.1 Monterey | x86_64 | 4.5.1 (2025-06-13) -- "Great Square Root" | 4615 |
kjohnson3 | macOS 13.7.7 Ventura | arm64 | 4.5.1 Patched (2025-06-14 r88325) -- "Great Square Root" | 4562 |
taishan | Linux (openEuler 24.03 LTS) | aarch64 | 4.5.0 (2025-04-11) -- "How About a Twenty-Six" | 4541 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
Package 1318/2320 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
mobileRNA 1.5.1 (landing page) Katie Jeynes-Cupper
| nebbiolo2 | Linux (Ubuntu 24.04.3 LTS) / x86_64 | OK | OK | OK | ![]() | ||||||||
lconway | macOS 12.7.1 Monterey / x86_64 | OK | OK | OK | OK | ![]() | ||||||||
kjohnson3 | macOS 13.7.7 Ventura / arm64 | OK | OK | OK | OK | ![]() | ||||||||
taishan | Linux (openEuler 24.03 LTS) / aarch64 | OK | OK | OK | ||||||||||
To the developers/maintainers of the mobileRNA package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/mobileRNA.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
Package: mobileRNA |
Version: 1.5.1 |
Command: /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD check --install=check:mobileRNA.install-out.txt --library=/home/biocbuild/bbs-3.22-bioc/R/site-library --timings mobileRNA_1.5.1.tar.gz |
StartedAt: 2025-08-30 00:43:42 -0400 (Sat, 30 Aug 2025) |
EndedAt: 2025-08-30 00:49:33 -0400 (Sat, 30 Aug 2025) |
EllapsedTime: 350.3 seconds |
RetCode: 0 |
Status: OK |
CheckDir: mobileRNA.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD check --install=check:mobileRNA.install-out.txt --library=/home/biocbuild/bbs-3.22-bioc/R/site-library --timings mobileRNA_1.5.1.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/home/biocbuild/bbs-3.22-bioc/meat/mobileRNA.Rcheck’ * using R version 4.5.1 (2025-06-13) * using platform: x86_64-pc-linux-gnu * R was compiled by gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0 GNU Fortran (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0 * running under: Ubuntu 24.04.3 LTS * using session charset: UTF-8 * checking for file ‘mobileRNA/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘mobileRNA’ version ‘1.5.1’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... INFO Imports includes 24 non-default packages. Importing from so many packages makes the package vulnerable to any of them becoming unavailable. Move as many as possible to Suggests and use conditionally. * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘mobileRNA’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed RNAdistribution 14.955 0.122 17.487 RNAdicercall 14.057 0.237 14.918 RNAsubset 10.065 0.023 10.089 RNAdifferentialAnalysis 7.972 0.142 8.239 * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking re-building of vignette outputs ... OK * checking PDF version of manual ... OK * DONE Status: OK
mobileRNA.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD INSTALL mobileRNA ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.22-bioc/R/site-library’ * installing *source* package ‘mobileRNA’ ... ** this is package ‘mobileRNA’ version ‘1.5.1’ ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (mobileRNA)
mobileRNA.Rcheck/mobileRNA-Ex.timings
name | user | system | elapsed | |
RNAattributes | 1.725 | 0.008 | 1.771 | |
RNAdf2se | 0.334 | 0.006 | 0.341 | |
RNAdicercall | 14.057 | 0.237 | 14.918 | |
RNAdifferentialAnalysis | 7.972 | 0.142 | 8.239 | |
RNAdistribution | 14.955 | 0.122 | 17.487 | |
RNAfeatures | 1.143 | 0.005 | 1.147 | |
RNAimport | 0 | 0 | 0 | |
RNAmergeAnnotations | 0.281 | 0.000 | 0.282 | |
RNAmergeGenomes | 0.041 | 0.001 | 0.042 | |
RNAmobile | 1.411 | 0.046 | 1.457 | |
RNApopulation | 1.872 | 0.004 | 1.876 | |
RNAreorder | 0.146 | 0.004 | 0.150 | |
RNAsequences | 1.29 | 0.01 | 1.30 | |
RNAsubset | 10.065 | 0.023 | 10.089 | |
RNAsummary | 4.761 | 0.018 | 4.771 | |
mRNA_data | 0.043 | 0.000 | 0.042 | |
mapRNA | 0 | 0 | 0 | |
plotHeatmap | 0.625 | 0.002 | 0.628 | |
plotRNAfeatures | 1.043 | 0.005 | 1.049 | |
plotSampleDistance | 2.360 | 0.006 | 2.366 | |
plotSamplePCA | 2.752 | 0.012 | 2.764 | |
sRNA_data | 0.155 | 0.003 | 0.158 | |