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This page was generated on 2025-01-11 11:46 -0500 (Sat, 11 Jan 2025).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 24.04.1 LTS)x86_64R Under development (unstable) (2024-10-21 r87258) -- "Unsuffered Consequences" 4760
palomino7Windows Server 2022 Datacenterx64R Under development (unstable) (2024-10-26 r87273 ucrt) -- "Unsuffered Consequences" 4479
lconwaymacOS 12.7.1 Montereyx86_64R Under development (unstable) (2024-11-20 r87352) -- "Unsuffered Consequences" 4443
kjohnson3macOS 13.7.1 Venturaarm64R Under development (unstable) (2024-11-20 r87352) -- "Unsuffered Consequences" 4398
kunpeng2Linux (openEuler 22.03 LTS-SP1)aarch64R Under development (unstable) (2024-11-24 r87369) -- "Unsuffered Consequences" 4391
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 1277/2277HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
mirTarRnaSeq 1.15.0  (landing page)
Mercedeh Movassagh
Snapshot Date: 2025-01-10 13:40 -0500 (Fri, 10 Jan 2025)
git_url: https://git.bioconductor.org/packages/mirTarRnaSeq
git_branch: devel
git_last_commit: 60572a9
git_last_commit_date: 2024-10-29 10:57:57 -0500 (Tue, 29 Oct 2024)
nebbiolo1Linux (Ubuntu 24.04.1 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
palomino7Windows Server 2022 Datacenter / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
lconwaymacOS 12.7.1 Monterey / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published
kjohnson3macOS 13.7.1 Ventura / arm64  OK    OK    OK    OK  UNNEEDED, same version is already published
kunpeng2Linux (openEuler 22.03 LTS-SP1) / aarch64  OK    OK    OK  


CHECK results for mirTarRnaSeq on kunpeng2

To the developers/maintainers of the mirTarRnaSeq package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/mirTarRnaSeq.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.
- See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host.

raw results


Summary

Package: mirTarRnaSeq
Version: 1.15.0
Command: /home/biocbuild/R/R/bin/R CMD check --install=check:mirTarRnaSeq.install-out.txt --library=/home/biocbuild/R/R/site-library --no-vignettes --timings mirTarRnaSeq_1.15.0.tar.gz
StartedAt: 2025-01-11 08:41:10 -0000 (Sat, 11 Jan 2025)
EndedAt: 2025-01-11 08:42:15 -0000 (Sat, 11 Jan 2025)
EllapsedTime: 65.1 seconds
RetCode: 0
Status:   OK  
CheckDir: mirTarRnaSeq.Rcheck
Warnings: 0

Command output

##############################################################################
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###
### Running command:
###
###   /home/biocbuild/R/R/bin/R CMD check --install=check:mirTarRnaSeq.install-out.txt --library=/home/biocbuild/R/R/site-library --no-vignettes --timings mirTarRnaSeq_1.15.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/home/biocbuild/bbs-3.21-bioc/meat/mirTarRnaSeq.Rcheck’
* using R Under development (unstable) (2024-11-24 r87369)
* using platform: aarch64-unknown-linux-gnu
* R was compiled by
    aarch64-unknown-linux-gnu-gcc (GCC) 14.2.0
    GNU Fortran (GCC) 14.2.0
* running under: openEuler 24.03 (LTS)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘mirTarRnaSeq/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘mirTarRnaSeq’ version ‘1.15.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘mirTarRnaSeq’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking whether startup messages can be suppressed ... OK
* checking dependencies in R code ... NOTE
Warning: program compiled against libxml 212 using older 211
Package in Depends field not imported from: ‘ggplot2’
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 NOTE
See
  ‘/home/biocbuild/bbs-3.21-bioc/meat/mirTarRnaSeq.Rcheck/00check.log’
for details.


Installation output

mirTarRnaSeq.Rcheck/00install.out

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/R/R/bin/R CMD INSTALL mirTarRnaSeq
###
##############################################################################
##############################################################################


* installing to library ‘/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library’
* installing *source* package ‘mirTarRnaSeq’ ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (mirTarRnaSeq)

Tests output


Example timings

mirTarRnaSeq.Rcheck/mirTarRnaSeq-Ex.timings

nameusersystemelapsed
combiner0.0040.0040.008
corMirnaRna0.1150.0080.122
corMirnaRnaMiranda0.2170.0360.253
downloadMirandaFile000
drawCorPlot000
drawInterPlots0.0320.0000.032
fdrSig0.7370.0000.739
finInterResult0.0010.0000.001
geneVari000
getInputSpecies0.3230.0080.334
glm_gaussian0.0000.0000.001
glm_multi0.0000.0000.001
glm_nb0.0010.0000.000
glm_poisson000
glm_zeroinfl0.0000.0000.001
glm_zeroinfl_negbin0.0000.0000.001
glm_zeroinfl_poisson0.0010.0000.000
importMirandaFile000
makeFormulaRightSide000
miRanComp0.0440.0000.044
miRandaIntersect0.0160.0040.020
mirRnaDensityCor0.0840.0040.089
mirRnaDensityInter000
mirRnaHeatmap0.9070.0120.921
mirRnaHeatmapDiff0.1030.0040.106
mirandaIntersectInter0.0180.0000.019
modelAIC0.0730.0000.074
modelCoefficients0.0010.0000.001
modelData0.0000.0000.001
modelModelName0.0010.0000.000
modelModelPvalue0.0000.0010.000
modelTermPvalues0.0000.0010.001
modelsFilter000
one2OneRnaMiRNA0.0000.0010.000
plotFit0.0080.0000.007
plotResiduals0.0080.0000.008
plotTerms0.0030.0000.003
runAllMirnaModels0.7170.0080.726
runModels0.6890.0080.699
sampCorRnaMirna1.1060.0601.167
threshSig000
threshSigInter0.0020.0000.002
twoTimePoint000
twoTimePointSamp0.0010.0000.000
tzTrans0.0070.0000.008