| Back to Multiple platform build/check report for BioC 3.21: simplified long |
|
This page was generated on 2025-02-03 12:38 -0500 (Mon, 03 Feb 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | R Under development (unstable) (2025-01-20 r87609) -- "Unsuffered Consequences" | 4704 |
| palomino7 | Windows Server 2022 Datacenter | x64 | R Under development (unstable) (2025-01-21 r87610 ucrt) -- "Unsuffered Consequences" | 4467 |
| lconway | macOS 12.7.1 Monterey | x86_64 | R Under development (unstable) (2025-01-22 r87618) -- "Unsuffered Consequences" | 4478 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 1255/2289 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| microRNA 1.65.0 (landing page) "James F. Reid"
| nebbiolo1 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | ERROR | OK | ERROR | |||||||||
| palomino7 | Windows Server 2022 Datacenter / x64 | ERROR | OK | ERROR | ERROR | |||||||||
| lconway | macOS 12.7.1 Monterey / x86_64 | ERROR | OK | ERROR | ERROR | |||||||||
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To the developers/maintainers of the microRNA package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/microRNA.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: microRNA |
| Version: 1.65.0 |
| Command: E:\biocbuild\bbs-3.21-bioc\R\bin\R.exe CMD INSTALL microRNA |
| StartedAt: 2025-02-02 15:51:25 -0500 (Sun, 02 Feb 2025) |
| EndedAt: 2025-02-02 15:51:30 -0500 (Sun, 02 Feb 2025) |
| EllapsedTime: 5.2 seconds |
| RetCode: 1 |
| Status: ERROR |
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### Running command:
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### E:\biocbuild\bbs-3.21-bioc\R\bin\R.exe CMD INSTALL microRNA
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* installing to library 'E:/biocbuild/bbs-3.21-bioc/R/library'
* installing *source* package 'microRNA' ...
** this is package 'microRNA' version '1.65.0'
** using staged installation
** libs
using C++ compiler: 'G__~1.EXE (GCC) 13.3.0'
g++ -std=gnu++17 -I"E:/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -DR_NO_REMAP -c longest_common_substring.cpp -o longest_common_substring.o
longest_common_substring.cpp: In function 'SEXPREC* longest_common_substring(SEXP)':
longest_common_substring.cpp:55:15: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long long unsigned int'} and '__gnu_cxx::__alloc_traits<std::allocator<int>, int>::value_type' {aka 'int'} [-Wsign-compare]
55 | if (i == len[index] - 1) { // ignore null termination character
| ~~^~~~~~~~~~~~~~~~~
longest_common_substring.cpp:87:35: error: 'mkCharLen' was not declared in this scope; did you mean 'Rf_mkCharLen'?
87 | SET_STRING_ELT(result, i, mkCharLen(found[i], lcs_len));
| ^~~~~~~~~
| Rf_mkCharLen
make: *** [E:/biocbuild/bbs-3.21-bioc/R/etc/x64/Makeconf:296: longest_common_substring.o] Error 1
ERROR: compilation failed for package 'microRNA'
* removing 'E:/biocbuild/bbs-3.21-bioc/R/library/microRNA'