Multiple platform build/check report for BioC 3.23 - BUILD results for mfa on kjohnson3

Hostname	OS	Arch (*)	R version	Installed pkgs
nebbiolo1	Linux (Ubuntu 24.04.3 LTS)	x86_64	R Under development (unstable) (2025-10-20 r88955) -- "Unsuffered Consequences"	4878
kjohnson3	macOS 13.7.7 Ventura	arm64	R Under development (unstable) (2025-11-04 r88984) -- "Unsuffered Consequences"	4593
Click on any hostname to see more info about the system (e.g. compilers) () as reported by 'uname -p', except on Windows and Mac OS X*

BUILD results for mfa on kjohnson3

To the developers/maintainers of the mfa package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/mfa.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: mfa

Version: 1.33.0

Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data mfa

StartedAt: 2025-12-21 16:53:52 -0500 (Sun, 21 Dec 2025)

EndedAt: 2025-12-21 16:54:03 -0500 (Sun, 21 Dec 2025)

EllapsedTime: 11.1 seconds

RetCode: 1

Status: ERROR

PackageFile: None

PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data mfa
###
##############################################################################
##############################################################################


* checking for file ‘mfa/DESCRIPTION’ ... OK
* preparing ‘mfa’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package (it is needed to build vignettes)
* creating vignettes ... ERROR
--- re-building ‘introduction_to_mfa.Rmd’ using rmarkdown
2025-12-21 16:54:01.147 R[17284:474038708] XType: Using static font registry.

Quitting from introduction_to_mfa.Rmd:94-97 [diagnostics]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `geom_smooth()`:
! Problem while computing stat.
ℹ Error occurred in the 2nd layer.
Caused by error in `get()`:
! object 'LOESS' of mode 'function' was not found
---
Backtrace:
     ▆
  1. ├─base::withVisible(knit_print(x, ...))
  2. ├─knitr::knit_print(x, ...)
  3. └─knitr:::knit_print.default(x, ...)
  4.   └─knitr::normal_print(x)
  5.     ├─base::print(x)
  6.     └─ggplot2 (local) `print.ggplot2::ggplot`(x)
  7.       ├─ggplot2::ggplot_build(x)
  8.       └─ggplot2 (local) `ggplot_build.ggplot2::ggplot`(x)
  9.         └─ggplot2:::by_layer(...)
 10.           ├─rlang::try_fetch(...)
 11.           │ ├─base::tryCatch(...)
 12.           │ │ └─base (local) tryCatchList(expr, classes, parentenv, handlers)
 13.           │ │   └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
 14.           │ │     └─base (local) doTryCatch(return(expr), name, parentenv, handler)
 15.           │ └─base::withCallingHandlers(...)
 16.           └─ggplot2 (local) f(l = layers[[i]], d = data[[i]])
 17.             └─l$compute_statistic(d, layout)
 18.               └─ggplot2 (local) compute_statistic(..., self = self)
 19.                 └─self$stat$setup_params(data, self$stat_params)
 20.                   └─ggplot2 (local) setup_params(...)
 21.                     └─base::match.fun(method)
 22.                       └─base::get(as.character(FUN), mode = "function", envir = envir)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'introduction_to_mfa.Rmd' failed with diagnostics:
Problem while computing stat.
ℹ Error occurred in the 2nd layer.
Caused by error in `get()`:
! object 'LOESS' of mode 'function' was not found
--- failed re-building ‘introduction_to_mfa.Rmd’

SUMMARY: processing the following file failed:
  ‘introduction_to_mfa.Rmd’

Error: Vignette re-building failed.
Execution halted