| Back to Build/check report for BioC 3.23: simplified long |
|
This page was generated on 2026-02-02 11:32 -0500 (Mon, 02 Feb 2026).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) | x86_64 | R Under development (unstable) (2026-01-15 r89304) -- "Unsuffered Consequences" | 4852 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 1263/2347 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| methylclock 1.17.0 (landing page) Dolors Pelegri-Siso
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) / x86_64 | OK | ERROR | skipped | |||||||||
| See other builds for methylclock in R Universe. | ||||||||||||||
|
To the developers/maintainers of the methylclock package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/methylclock.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: methylclock |
| Version: 1.17.0 |
| Command: /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data methylclock |
| StartedAt: 2026-02-01 18:36:59 -0500 (Sun, 01 Feb 2026) |
| EndedAt: 2026-02-01 18:41:11 -0500 (Sun, 01 Feb 2026) |
| EllapsedTime: 252.2 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
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### Running command:
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### /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data methylclock
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* checking for file ‘methylclock/DESCRIPTION’ ... OK
* preparing ‘methylclock’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package (it is needed to build vignettes)
* creating vignettes ... ERROR
--- re-building ‘methylclock.Rmd’ using rmarkdown
Quitting from methylclock.Rmd:471-481 [get_geo_gse58045]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/httr2_http_403>
Error in `httr2::req_perform()`:
! HTTP 403 Forbidden.
---
Backtrace:
▆
1. └─GEOquery::getGEO("GSE58045")
2. └─GEOquery:::getAndParseGSEMatrices(...)
3. └─GEOquery:::downloadFile(url, destfile = destfile, mode = "wb")
4. ├─base::tryCatch(...)
5. │ └─base (local) tryCatchList(expr, classes, parentenv, handlers)
6. │ └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
7. │ └─base (local) doTryCatch(return(expr), name, parentenv, handler)
8. └─httr2::req_perform(req)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'methylclock.Rmd' failed with diagnostics:
HTTP 403 Forbidden.
--- failed re-building ‘methylclock.Rmd’
SUMMARY: processing the following file failed:
‘methylclock.Rmd’
Error: Vignette re-building failed.
Execution halted