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This page was generated on 2024-12-24 11:46 -0500 (Tue, 24 Dec 2024).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 24.04.1 LTS)x86_64R Under development (unstable) (2024-10-21 r87258) -- "Unsuffered Consequences" 4754
palomino7Windows Server 2022 Datacenterx64R Under development (unstable) (2024-10-26 r87273 ucrt) -- "Unsuffered Consequences" 4472
lconwaymacOS 12.7.1 Montereyx86_64R Under development (unstable) (2024-11-20 r87352) -- "Unsuffered Consequences" 4426
kjohnson3macOS 13.7.1 Venturaarm64R Under development (unstable) (2024-11-20 r87352) -- "Unsuffered Consequences" 4381
kunpeng2Linux (openEuler 22.03 LTS-SP1)aarch64R Under development (unstable) (2024-11-24 r87369) -- "Unsuffered Consequences" 4373
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 1202/2274HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
metahdep 1.65.0  (landing page)
John R. Stevens
Snapshot Date: 2024-12-23 13:40 -0500 (Mon, 23 Dec 2024)
git_url: https://git.bioconductor.org/packages/metahdep
git_branch: devel
git_last_commit: c7cca38
git_last_commit_date: 2024-10-29 09:30:53 -0500 (Tue, 29 Oct 2024)
nebbiolo1Linux (Ubuntu 24.04.1 LTS) / x86_64  OK    OK    WARNINGS  UNNEEDED, same version is already published
palomino7Windows Server 2022 Datacenter / x64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published
lconwaymacOS 12.7.1 Monterey / x86_64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published
kjohnson3macOS 13.7.1 Ventura / arm64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published
kunpeng2Linux (openEuler 22.03 LTS-SP1) / aarch64  ERROR    ERROR  skipped

BUILD results for metahdep on kunpeng2

To the developers/maintainers of the metahdep package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/metahdep.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.
- See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host.

raw results


Summary

Package: metahdep
Version: 1.65.0
Command: /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data metahdep
StartedAt: 2024-12-24 00:16:45 -0000 (Tue, 24 Dec 2024)
EndedAt: 2024-12-24 00:16:46 -0000 (Tue, 24 Dec 2024)
EllapsedTime: 1.0 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
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###
### Running command:
###
###   /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data metahdep
###
##############################################################################
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* checking for file ‘metahdep/DESCRIPTION’ ... OK
* preparing ‘metahdep’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
      -----------------------------------
* installing *source* package ‘metahdep’ ...
** using staged installation
** libs
using C compiler: ‘aarch64-unknown-linux-gnu-gcc (GCC) 14.2.0’
/opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-gcc -I"/home/biocbuild/R/R/include" -DNDEBUG   -I/usr/local/include    -fPIC  -g -O2  -Wall -Werror=format-security -c metahdep.c -o metahdep.o
In file included from metahdep.c:3:
metahdep.c: In function ‘get_row_indices2’:
/home/biocbuild/R/R/include/Rinternals.h:203:17: error: passing argument 5 of ‘metan_binary_search_unique’ makes integer from pointer without a cast [-Wint-conversion]
  203 | #define CHAR(x) R_CHAR(x)
      |                 ^~~~~~~~~
      |                 |
      |                 const char *
metahdep.c:471:107: note: in expansion of macro ‘CHAR’
  471 |                                 index = metan_binary_search_unique(name_list, sort_index, R_old_names, j, CHAR(STRING_ELT(R_old_chipsets, j)), i);
      |                                                                                                           ^~~~
metahdep.c:372:103: note: expected ‘char’ but argument is of type ‘const char *’
  372 | SEXP metan_binary_search_unique(SEXP name_list, SEXP sort_index, SEXP gene_name, int gene_index, char chipset_name, int study_num)
      |                                                                                                  ~~~~~^~~~~~~~~~~~
make: *** [/home/biocbuild/R/R/etc/Makeconf:195: metahdep.o] Error 1
ERROR: compilation failed for package ‘metahdep’
* removing ‘/home/biocbuild/tmp/Rtmp8nTnRg/Rinst33b5b4244ef103/metahdep’
      -----------------------------------
ERROR: package installation failed