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This page was generated on 2026-01-09 12:02 -0500 (Fri, 09 Jan 2026).

HostnameOSArch (*)R versionInstalled pkgs
kjohnson3macOS 13.7.7 Venturaarm64R Under development (unstable) (2025-11-04 r88984) -- "Unsuffered Consequences" 4593
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Package 1198/2332HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
mbkmeans 1.27.0  (landing page)
Davide Risso
Snapshot Date: 2026-01-08 13:40 -0500 (Thu, 08 Jan 2026)
git_url: https://git.bioconductor.org/packages/mbkmeans
git_branch: devel
git_last_commit: 2aa9036
git_last_commit_date: 2025-10-29 10:51:15 -0500 (Wed, 29 Oct 2025)
kjohnson3macOS 13.7.7 Ventura / arm64  ERROR    ERROR  skippedskipped

BUILD results for mbkmeans on kjohnson3

To the developers/maintainers of the mbkmeans package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/mbkmeans.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: mbkmeans
Version: 1.27.0
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data mbkmeans
StartedAt: 2026-01-08 16:51:21 -0500 (Thu, 08 Jan 2026)
EndedAt: 2026-01-08 16:51:25 -0500 (Thu, 08 Jan 2026)
EllapsedTime: 4.0 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
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###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data mbkmeans
###
##############################################################################
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* checking for file ‘mbkmeans/DESCRIPTION’ ... OK
* preparing ‘mbkmeans’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package (it is needed to build vignettes)
      -----------------------------------
* installing *source* package ‘mbkmeans’ ...
** this is package ‘mbkmeans’ version ‘1.27.0’
** using staged installation
** libs
using C++ compiler: ‘Apple clang version 15.0.0 (clang-1500.1.0.2.5)’
using C++11
using SDK: ‘MacOSX11.3.1.sdk’
clang++ -arch arm64 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.6-arm64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.6-arm64/Resources/library/RcppArmadillo/include' -I'/Library/Frameworks/R.framework/Versions/4.6-arm64/Resources/library/Rhdf5lib/include' -I'/Library/Frameworks/R.framework/Versions/4.6-arm64/Resources/library/beachmat/include' -I'/Library/Frameworks/R.framework/Versions/4.6-arm64/Resources/library/ClusterR/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c RcppExports.cpp -o RcppExports.o
In file included from RcppExports.cpp:4:
In file included from /Library/Frameworks/R.framework/Versions/4.6-arm64/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:
/Library/Frameworks/R.framework/Versions/4.6-arm64/Resources/library/RcppArmadillo/include/RcppArmadillo/version/arma.h:66:17: warning: Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT and also removing C++11 compilation directive. See GitHub issue #475 for more. [-W#pragma-messages]
        #pragma message("Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT and also removing C++11 compilation directive. See GitHub issue #475 for more.")
                ^
1 warning generated.
clang++ -arch arm64 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.6-arm64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.6-arm64/Resources/library/RcppArmadillo/include' -I'/Library/Frameworks/R.framework/Versions/4.6-arm64/Resources/library/Rhdf5lib/include' -I'/Library/Frameworks/R.framework/Versions/4.6-arm64/Resources/library/beachmat/include' -I'/Library/Frameworks/R.framework/Versions/4.6-arm64/Resources/library/ClusterR/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c mini_batch.cpp -o mini_batch.o
In file included from mini_batch.cpp:2:
In file included from /Library/Frameworks/R.framework/Versions/4.6-arm64/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:
/Library/Frameworks/R.framework/Versions/4.6-arm64/Resources/library/RcppArmadillo/include/RcppArmadillo/version/arma.h:66:17: warning: Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT and also removing C++11 compilation directive. See GitHub issue #475 for more. [-W#pragma-messages]
        #pragma message("Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT and also removing C++11 compilation directive. See GitHub issue #475 for more.")
                ^
In file included from mini_batch.cpp:3:
/Library/Frameworks/R.framework/Versions/4.6-arm64/Resources/library/ClusterR/include/ClusterRHeader.h:862:14: warning: variable 'status' set but not used [-Wunused-but-set-variable]
        bool status;
             ^
/Library/Frameworks/R.framework/Versions/4.6-arm64/Resources/library/ClusterR/include/ClusterRHeader.h:1530:14: warning: variable 'status' set but not used [-Wunused-but-set-variable]
        bool status;
             ^
In file included from mini_batch.cpp:2:
In file included from /Library/Frameworks/R.framework/Versions/4.6-arm64/Resources/library/RcppArmadillo/include/RcppArmadillo.h:32:
In file included from /Library/Frameworks/R.framework/Versions/4.6-arm64/Resources/library/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:26:
In file included from /Library/Frameworks/R.framework/Versions/4.6-arm64/Resources/library/Rcpp/include/RcppCommon.h:133:
In file included from /Library/Frameworks/R.framework/Versions/4.6-arm64/Resources/library/Rcpp/include/Rcpp/proxy/proxy.h:24:
/Library/Frameworks/R.framework/Versions/4.6-arm64/Resources/library/Rcpp/include/Rcpp/proxy/AttributeProxy.h:91:9: error: use of undeclared identifier 'R_hasAttrib'
        return R_hasAttrib(static_cast<const CLASS&>(*this).get__(),
               ^
/Library/Frameworks/R.framework/Versions/4.6-arm64/Resources/library/beachmat/include/beachmat/input/../utils/utils.h:41:20: note: in instantiation of member function 'Rcpp::AttributeProxyPolicy<Rcpp::RObject_Impl<Rcpp::PreserveStorage>>::hasAttribute' requested here
    if (!classname.hasAttribute("package")) {
                   ^
3 warnings and 1 error generated.
make: *** [mini_batch.o] Error 1
ERROR: compilation failed for package ‘mbkmeans’
* removing ‘/private/var/folders/r0/l4fjk6cj5xj0j3brt4bplpl40000gt/T/RtmphhLyiQ/Rinst29002c224ba/mbkmeans’
      -----------------------------------
ERROR: package installation failed