Multiple platform build/check report for BioC 3.22 - BUILD results for maaslin3 on nebbiolo2

Hostname	OS	Arch (*)	R version	Installed pkgs
nebbiolo2	Linux (Ubuntu 24.04.3 LTS)	x86_64	4.5.1 Patched (2025-08-23 r88802) -- "Great Square Root"	4719
lconway	macOS 12.7.1 Monterey	x86_64	4.5.1 Patched (2025-09-10 r88807) -- "Great Square Root"	4538
kjohnson3	macOS 13.7.7 Ventura	arm64	4.5.1 Patched (2025-09-10 r88807) -- "Great Square Root"	4522
taishan	Linux (openEuler 24.03 LTS)	aarch64	4.5.0 (2025-04-11) -- "How About a Twenty-Six"	4543
Click on any hostname to see more info about the system (e.g. compilers) () as reported by 'uname -p', except on Windows and Mac OS X*

BUILD results for maaslin3 on nebbiolo2

To the developers/maintainers of the maaslin3 package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/maaslin3.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: maaslin3

Version: 1.1.0

Command: /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data --md5 maaslin3

StartedAt: 2025-09-12 18:18:05 -0400 (Fri, 12 Sep 2025)

EndedAt: 2025-09-12 18:20:24 -0400 (Fri, 12 Sep 2025)

EllapsedTime: 139.1 seconds

RetCode: 1

Status: ERROR

PackageFile: None

PackageFileSize: NA

Command output

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### Running command:
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###   /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data --md5 maaslin3
###
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* checking for file ‘maaslin3/DESCRIPTION’ ... OK
* preparing ‘maaslin3’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘maaslin3_manual.Rmd’ using rmarkdown
--- finished re-building ‘maaslin3_manual.Rmd’

--- re-building ‘maaslin3_tutorial.Rmd’ using rmarkdown

Quitting from maaslin3_tutorial.Rmd:726-737 [unnamed-chunk-14]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error:
! <ggplot2::labels> object is invalid:
- every label must be named.
---
Backtrace:
     ▆
  1. └─maaslin3::maaslin3(...)
  2.   ├─base::tryCatch(...)
  3.   │ └─base (local) tryCatchList(expr, classes, parentenv, handlers)
  4.   ├─base::withCallingHandlers(...)
  5.   └─maaslin3::maaslin_plot_results(...)
  6.     ├─base::tryCatch(...)
  7.     │ └─base (local) tryCatchList(expr, classes, parentenv, handlers)
  8.     ├─base::withCallingHandlers(...)
  9.     └─maaslin3:::maaslin3_association_plots(...)
 10.       └─maaslin3:::make_lm_plot(...)
 11.         └─maaslin3:::make_scatterplot(...)
 12.           └─ggplot2::labs("")
 13.             └─ggplot2::class_labels(args)
 14.               └─S7::new_object(labels)
 15.                 └─S7::validate(object, recursive = !parent_validated)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'maaslin3_tutorial.Rmd' failed with diagnostics:
<ggplot2::labels> object is invalid:
- every label must be named.
--- failed re-building ‘maaslin3_tutorial.Rmd’

SUMMARY: processing the following file failed:
  ‘maaslin3_tutorial.Rmd’

Error: Vignette re-building failed.
Execution halted