William Nickols
| Snapshot Date: 2025-10-16 13:45 -0400 (Thu, 16 Oct 2025) |
| git_url: https://git.bioconductor.org/packages/maaslin3 |
| git_branch: devel |
| git_last_commit: e7106d5 |
| git_last_commit_date: 2025-10-12 11:00:51 -0400 (Sun, 12 Oct 2025) |
| Back to Multiple platform build/check report for BioC 3.22: simplified long |
|
This page was generated on 2025-10-17 12:06 -0400 (Fri, 17 Oct 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 24.04.3 LTS) | x86_64 | 4.5.1 Patched (2025-08-23 r88802) -- "Great Square Root" | 4887 |
| lconway | macOS 12.7.6 Monterey | x86_64 | 4.5.1 Patched (2025-09-10 r88807) -- "Great Square Root" | 4677 |
| kjohnson3 | macOS 13.7.7 Ventura | arm64 | 4.5.1 Patched (2025-09-10 r88807) -- "Great Square Root" | 4622 |
| taishan | Linux (openEuler 24.03 LTS) | aarch64 | 4.5.0 (2025-04-11) -- "How About a Twenty-Six" | 4632 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 1164/2353 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| maaslin3 1.1.2 (landing page) William Nickols
| nebbiolo2 | Linux (Ubuntu 24.04.3 LTS) / x86_64 | OK | OK | OK | | ||||||||
| lconway | macOS 12.7.6 Monterey / x86_64 | OK | OK | OK | OK | | ||||||||
| kjohnson3 | macOS 13.7.7 Ventura / arm64 | OK | OK | OK | OK | | ||||||||
| taishan | Linux (openEuler 24.03 LTS) / aarch64 | OK | OK | OK | ||||||||||
|
To the developers/maintainers of the maaslin3 package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/maaslin3.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: maaslin3 |
| Version: 1.1.2 |
| Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:maaslin3.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings maaslin3_1.1.2.tar.gz |
| StartedAt: 2025-10-16 20:28:43 -0400 (Thu, 16 Oct 2025) |
| EndedAt: 2025-10-16 20:33:32 -0400 (Thu, 16 Oct 2025) |
| EllapsedTime: 288.6 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: maaslin3.Rcheck |
| Warnings: 0 |
##############################################################################
##############################################################################
###
### Running command:
###
### /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:maaslin3.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings maaslin3_1.1.2.tar.gz
###
##############################################################################
##############################################################################
* using log directory ‘/Users/biocbuild/bbs-3.22-bioc/meat/maaslin3.Rcheck’
* using R version 4.5.1 Patched (2025-09-10 r88807)
* using platform: aarch64-apple-darwin20
* R was compiled by
Apple clang version 16.0.0 (clang-1600.0.26.6)
GNU Fortran (GCC) 14.2.0
* running under: macOS Ventura 13.7.7
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘maaslin3/DESCRIPTION’ ... OK
* this is package ‘maaslin3’ version ‘1.1.2’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘maaslin3’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
maaslin_plot_results 16.172 0.691 17.033
maaslin_plot_results_from_output 16.308 0.548 16.921
maaslin3 8.403 0.512 8.944
maaslin_contrast_test 6.614 0.710 7.592
maaslin_write_results 5.316 0.572 5.903
maaslin_write_results_lefse_format 5.552 0.313 5.869
maaslin_fit 4.658 0.629 5.448
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
Running ‘testthat.R’
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: OK
maaslin3.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL maaslin3 ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library’ * installing *source* package ‘maaslin3’ ... ** this is package ‘maaslin3’ version ‘1.1.2’ ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (maaslin3)
maaslin3.Rcheck/tests/testthat.Rout
R version 4.5.1 Patched (2025-09-10 r88807) -- "Great Square Root"
Copyright (C) 2025 The R Foundation for Statistical Computing
Platform: aarch64-apple-darwin20
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> library(testthat)
> library(maaslin3)
>
> test_check("maaslin3")
2025-10-16 20:31:09.80972 WARNING::Fitting problem for feature 50 returning NA
2025-10-16 20:31:09.836383 WARNING::Fitting problem for feature 62 returning NA
2025-10-16 20:31:09.870065 WARNING::Fitting problem for feature 74 returning NA
2025-10-16 20:31:09.877231 WARNING::Fitting problem for feature 78 returning NA
2025-10-16 20:31:09.888599 WARNING::Fitting problem for feature 84 returning NA
2025-10-16 20:31:09.914152 WARNING::Fitting problem for feature 96 returning NA
2025-10-16 20:31:09.916067 WARNING::Fitting problem for feature 97 returning NA
2025-10-16 20:31:09.919893 WARNING::Fitting problem for feature 99 returning NA
2025-10-16 20:31:09.957593 WARNING::Fitting problem for feature 114 returning NA
2025-10-16 20:31:09.959524 WARNING::Fitting problem for feature 115 returning NA
2025-10-16 20:31:09.980134 WARNING::Fitting problem for feature 123 returning NA
2025-10-16 20:31:09.993774 WARNING::Fitting problem for feature 130 returning NA
2025-10-16 20:31:09.997863 WARNING::Fitting problem for feature 132 returning NA
2025-10-16 20:31:10.015179 WARNING::Fitting problem for feature 139 returning NA
2025-10-16 20:31:10.037216 WARNING::Fitting problem for feature 150 returning NA
2025-10-16 20:31:16.780133 WARNING::Fitting problem for feature 50 returning NA
2025-10-16 20:31:16.80634 WARNING::Fitting problem for feature 62 returning NA
2025-10-16 20:31:16.840885 WARNING::Fitting problem for feature 74 returning NA
2025-10-16 20:31:16.848412 WARNING::Fitting problem for feature 78 returning NA
2025-10-16 20:31:16.860031 WARNING::Fitting problem for feature 84 returning NA
2025-10-16 20:31:16.886262 WARNING::Fitting problem for feature 96 returning NA
2025-10-16 20:31:16.888209 WARNING::Fitting problem for feature 97 returning NA
2025-10-16 20:31:16.892179 WARNING::Fitting problem for feature 99 returning NA
2025-10-16 20:31:16.923024 WARNING::Fitting problem for feature 114 returning NA
2025-10-16 20:31:16.924904 WARNING::Fitting problem for feature 115 returning NA
2025-10-16 20:31:16.94175 WARNING::Fitting problem for feature 123 returning NA
2025-10-16 20:31:16.955413 WARNING::Fitting problem for feature 130 returning NA
2025-10-16 20:31:16.959407 WARNING::Fitting problem for feature 132 returning NA
2025-10-16 20:31:16.972548 WARNING::Fitting problem for feature 139 returning NA
2025-10-16 20:31:16.994368 WARNING::Fitting problem for feature 150 returning NA
2025-10-16 20:31:18.399 R[79917:480718771] XType: Using static font registry.
2025-10-16 20:31:26.248302 WARNING::Fitting problem for feature 50 returning NA
2025-10-16 20:31:26.27368 WARNING::Fitting problem for feature 62 returning NA
2025-10-16 20:31:26.299097 WARNING::Fitting problem for feature 74 returning NA
2025-10-16 20:31:26.307222 WARNING::Fitting problem for feature 78 returning NA
2025-10-16 20:31:26.319529 WARNING::Fitting problem for feature 84 returning NA
2025-10-16 20:31:26.345938 WARNING::Fitting problem for feature 96 returning NA
2025-10-16 20:31:26.348012 WARNING::Fitting problem for feature 97 returning NA
2025-10-16 20:31:26.352437 WARNING::Fitting problem for feature 99 returning NA
2025-10-16 20:31:26.385582 WARNING::Fitting problem for feature 114 returning NA
2025-10-16 20:31:26.387708 WARNING::Fitting problem for feature 115 returning NA
2025-10-16 20:31:26.405273 WARNING::Fitting problem for feature 123 returning NA
2025-10-16 20:31:26.418756 WARNING::Fitting problem for feature 130 returning NA
2025-10-16 20:31:26.423296 WARNING::Fitting problem for feature 132 returning NA
2025-10-16 20:31:26.438464 WARNING::Fitting problem for feature 139 returning NA
2025-10-16 20:31:26.462517 WARNING::Fitting problem for feature 150 returning NA
2025-10-16 20:31:31.755456 WARNING::Fitting problem for feature 50 returning NA
2025-10-16 20:31:31.781634 WARNING::Fitting problem for feature 62 returning NA
2025-10-16 20:31:31.806856 WARNING::Fitting problem for feature 74 returning NA
2025-10-16 20:31:31.814278 WARNING::Fitting problem for feature 78 returning NA
2025-10-16 20:31:31.826021 WARNING::Fitting problem for feature 84 returning NA
2025-10-16 20:31:31.852202 WARNING::Fitting problem for feature 96 returning NA
2025-10-16 20:31:31.854259 WARNING::Fitting problem for feature 97 returning NA
2025-10-16 20:31:31.858367 WARNING::Fitting problem for feature 99 returning NA
2025-10-16 20:31:31.891739 WARNING::Fitting problem for feature 114 returning NA
2025-10-16 20:31:31.893798 WARNING::Fitting problem for feature 115 returning NA
2025-10-16 20:31:31.912054 WARNING::Fitting problem for feature 123 returning NA
2025-10-16 20:31:31.927276 WARNING::Fitting problem for feature 130 returning NA
2025-10-16 20:31:31.93216 WARNING::Fitting problem for feature 132 returning NA
2025-10-16 20:31:31.946913 WARNING::Fitting problem for feature 139 returning NA
2025-10-16 20:31:31.972305 WARNING::Fitting problem for feature 150 returning NA
2025-10-16 20:31:32.054634 WARNING::Deleting existing residuals file: /var/folders/r0/l4fjk6cj5xj0j3brt4bplpl40000gt/T//RtmpNO5ghl/file1382d1f3c3752/fits/residuals_linear.rds
2025-10-16 20:31:32.086524 WARNING::Deleting existing fitted file: /var/folders/r0/l4fjk6cj5xj0j3brt4bplpl40000gt/T//RtmpNO5ghl/file1382d1f3c3752/fits/fitted_linear.rds
2025-10-16 20:31:32.12151 WARNING::Deleting existing residuals file: /var/folders/r0/l4fjk6cj5xj0j3brt4bplpl40000gt/T//RtmpNO5ghl/file1382d1f3c3752/fits/residuals_logistic.rds
2025-10-16 20:31:32.287916 WARNING::Deleting existing fitted file: /var/folders/r0/l4fjk6cj5xj0j3brt4bplpl40000gt/T//RtmpNO5ghl/file1382d1f3c3752/fits/fitted_logistic.rds
2025-10-16 20:31:40.546909 WARNING::Fitting problem for feature 50 returning NA
2025-10-16 20:31:40.574138 WARNING::Fitting problem for feature 62 returning NA
2025-10-16 20:31:40.600151 WARNING::Fitting problem for feature 74 returning NA
2025-10-16 20:31:40.608053 WARNING::Fitting problem for feature 78 returning NA
2025-10-16 20:31:40.620383 WARNING::Fitting problem for feature 84 returning NA
2025-10-16 20:31:40.648027 WARNING::Fitting problem for feature 96 returning NA
2025-10-16 20:31:40.650276 WARNING::Fitting problem for feature 97 returning NA
2025-10-16 20:31:40.654767 WARNING::Fitting problem for feature 99 returning NA
2025-10-16 20:31:40.689571 WARNING::Fitting problem for feature 114 returning NA
2025-10-16 20:31:40.691719 WARNING::Fitting problem for feature 115 returning NA
2025-10-16 20:31:40.709696 WARNING::Fitting problem for feature 123 returning NA
2025-10-16 20:31:40.724018 WARNING::Fitting problem for feature 130 returning NA
2025-10-16 20:31:41.200676 WARNING::Fitting problem for feature 132 returning NA
2025-10-16 20:31:41.214722 WARNING::Fitting problem for feature 139 returning NA
2025-10-16 20:31:41.238323 WARNING::Fitting problem for feature 150 returning NA
2025-10-16 20:31:46.143945 WARNING::Fitting problem for feature 50 returning NA
2025-10-16 20:31:46.190595 WARNING::Fitting problem for feature 62 returning NA
2025-10-16 20:31:46.216287 WARNING::Fitting problem for feature 74 returning NA
2025-10-16 20:31:46.223826 WARNING::Fitting problem for feature 78 returning NA
2025-10-16 20:31:46.236143 WARNING::Fitting problem for feature 84 returning NA
2025-10-16 20:31:46.26348 WARNING::Fitting problem for feature 96 returning NA
2025-10-16 20:31:46.265513 WARNING::Fitting problem for feature 97 returning NA
2025-10-16 20:31:46.269761 WARNING::Fitting problem for feature 99 returning NA
2025-10-16 20:31:46.304686 WARNING::Fitting problem for feature 114 returning NA
2025-10-16 20:31:46.30681 WARNING::Fitting problem for feature 115 returning NA
2025-10-16 20:31:46.324387 WARNING::Fitting problem for feature 123 returning NA
2025-10-16 20:31:46.338562 WARNING::Fitting problem for feature 130 returning NA
2025-10-16 20:31:46.343011 WARNING::Fitting problem for feature 132 returning NA
2025-10-16 20:31:46.35743 WARNING::Fitting problem for feature 139 returning NA
2025-10-16 20:31:46.381664 WARNING::Fitting problem for feature 150 returning NA
2025-10-16 20:31:46.457635 WARNING::Deleting existing residuals file: /var/folders/r0/l4fjk6cj5xj0j3brt4bplpl40000gt/T//RtmpNO5ghl/file1382d1f3c3752/fits/residuals_linear.rds
2025-10-16 20:31:46.490062 WARNING::Deleting existing fitted file: /var/folders/r0/l4fjk6cj5xj0j3brt4bplpl40000gt/T//RtmpNO5ghl/file1382d1f3c3752/fits/fitted_linear.rds
2025-10-16 20:31:46.52349 WARNING::Deleting existing residuals file: /var/folders/r0/l4fjk6cj5xj0j3brt4bplpl40000gt/T//RtmpNO5ghl/file1382d1f3c3752/fits/residuals_logistic.rds
2025-10-16 20:31:46.689029 WARNING::Deleting existing fitted file: /var/folders/r0/l4fjk6cj5xj0j3brt4bplpl40000gt/T//RtmpNO5ghl/file1382d1f3c3752/fits/fitted_logistic.rds
2025-10-16 20:31:54.820489 WARNING::Fitting problem for feature 50 returning NA
2025-10-16 20:31:54.848188 WARNING::Fitting problem for feature 62 returning NA
2025-10-16 20:31:54.874216 WARNING::Fitting problem for feature 74 returning NA
2025-10-16 20:31:54.881733 WARNING::Fitting problem for feature 78 returning NA
2025-10-16 20:31:54.893673 WARNING::Fitting problem for feature 84 returning NA
2025-10-16 20:31:54.920644 WARNING::Fitting problem for feature 96 returning NA
2025-10-16 20:31:54.922661 WARNING::Fitting problem for feature 97 returning NA
2025-10-16 20:31:54.92686 WARNING::Fitting problem for feature 99 returning NA
2025-10-16 20:31:54.961692 WARNING::Fitting problem for feature 114 returning NA
2025-10-16 20:31:54.963756 WARNING::Fitting problem for feature 115 returning NA
2025-10-16 20:31:54.982166 WARNING::Fitting problem for feature 123 returning NA
2025-10-16 20:31:54.997503 WARNING::Fitting problem for feature 130 returning NA
2025-10-16 20:31:55.002067 WARNING::Fitting problem for feature 132 returning NA
2025-10-16 20:31:55.01657 WARNING::Fitting problem for feature 139 returning NA
2025-10-16 20:31:55.04059 WARNING::Fitting problem for feature 150 returning NA
2025-10-16 20:32:00.246458 WARNING::Fitting problem for feature 50 returning NA
2025-10-16 20:32:00.273575 WARNING::Fitting problem for feature 62 returning NA
2025-10-16 20:32:00.299653 WARNING::Fitting problem for feature 74 returning NA
2025-10-16 20:32:00.307612 WARNING::Fitting problem for feature 78 returning NA
2025-10-16 20:32:00.319974 WARNING::Fitting problem for feature 84 returning NA
2025-10-16 20:32:00.347033 WARNING::Fitting problem for feature 96 returning NA
2025-10-16 20:32:00.349221 WARNING::Fitting problem for feature 97 returning NA
2025-10-16 20:32:00.353535 WARNING::Fitting problem for feature 99 returning NA
2025-10-16 20:32:00.386691 WARNING::Fitting problem for feature 114 returning NA
2025-10-16 20:32:00.388755 WARNING::Fitting problem for feature 115 returning NA
2025-10-16 20:32:00.405921 WARNING::Fitting problem for feature 123 returning NA
2025-10-16 20:32:00.420946 WARNING::Fitting problem for feature 130 returning NA
2025-10-16 20:32:00.425785 WARNING::Fitting problem for feature 132 returning NA
2025-10-16 20:32:00.441357 WARNING::Fitting problem for feature 139 returning NA
2025-10-16 20:32:00.468276 WARNING::Fitting problem for feature 150 returning NA
2025-10-16 20:32:00.548413 WARNING::Deleting existing residuals file: /var/folders/r0/l4fjk6cj5xj0j3brt4bplpl40000gt/T//RtmpNO5ghl/file1382d1f3c3752/fits/residuals_linear.rds
2025-10-16 20:32:00.580883 WARNING::Deleting existing fitted file: /var/folders/r0/l4fjk6cj5xj0j3brt4bplpl40000gt/T//RtmpNO5ghl/file1382d1f3c3752/fits/fitted_linear.rds
2025-10-16 20:32:00.61458 WARNING::Deleting existing residuals file: /var/folders/r0/l4fjk6cj5xj0j3brt4bplpl40000gt/T//RtmpNO5ghl/file1382d1f3c3752/fits/residuals_logistic.rds
2025-10-16 20:32:00.781148 WARNING::Deleting existing fitted file: /var/folders/r0/l4fjk6cj5xj0j3brt4bplpl40000gt/T//RtmpNO5ghl/file1382d1f3c3752/fits/fitted_logistic.rds
2025-10-16 20:32:08.914758 WARNING::Fitting problem for feature 50 returning NA
2025-10-16 20:32:08.942829 WARNING::Fitting problem for feature 62 returning NA
2025-10-16 20:32:08.968925 WARNING::Fitting problem for feature 74 returning NA
2025-10-16 20:32:08.976728 WARNING::Fitting problem for feature 78 returning NA
2025-10-16 20:32:08.989111 WARNING::Fitting problem for feature 84 returning NA
2025-10-16 20:32:09.015801 WARNING::Fitting problem for feature 96 returning NA
2025-10-16 20:32:09.01781 WARNING::Fitting problem for feature 97 returning NA
2025-10-16 20:32:09.021898 WARNING::Fitting problem for feature 99 returning NA
2025-10-16 20:32:09.055489 WARNING::Fitting problem for feature 114 returning NA
2025-10-16 20:32:09.057643 WARNING::Fitting problem for feature 115 returning NA
2025-10-16 20:32:09.075107 WARNING::Fitting problem for feature 123 returning NA
2025-10-16 20:32:09.112206 WARNING::Fitting problem for feature 130 returning NA
2025-10-16 20:32:09.116768 WARNING::Fitting problem for feature 132 returning NA
2025-10-16 20:32:09.131076 WARNING::Fitting problem for feature 139 returning NA
2025-10-16 20:32:09.156329 WARNING::Fitting problem for feature 150 returning NA
2025-10-16 20:32:14.265208 WARNING::Fitting problem for feature 50 returning NA
2025-10-16 20:32:14.29211 WARNING::Fitting problem for feature 62 returning NA
2025-10-16 20:32:14.318238 WARNING::Fitting problem for feature 74 returning NA
2025-10-16 20:32:14.325916 WARNING::Fitting problem for feature 78 returning NA
2025-10-16 20:32:14.337551 WARNING::Fitting problem for feature 84 returning NA
2025-10-16 20:32:14.363374 WARNING::Fitting problem for feature 96 returning NA
2025-10-16 20:32:14.365338 WARNING::Fitting problem for feature 97 returning NA
2025-10-16 20:32:14.36937 WARNING::Fitting problem for feature 99 returning NA
2025-10-16 20:32:14.401842 WARNING::Fitting problem for feature 114 returning NA
2025-10-16 20:32:14.403908 WARNING::Fitting problem for feature 115 returning NA
2025-10-16 20:32:14.421263 WARNING::Fitting problem for feature 123 returning NA
2025-10-16 20:32:14.435051 WARNING::Fitting problem for feature 130 returning NA
2025-10-16 20:32:14.439377 WARNING::Fitting problem for feature 132 returning NA
2025-10-16 20:32:14.453764 WARNING::Fitting problem for feature 139 returning NA
2025-10-16 20:32:14.477273 WARNING::Fitting problem for feature 150 returning NA
2025-10-16 20:32:23.561915 WARNING::Fitting problem for feature 124 returning NA
2025-10-16 20:32:27.43627 WARNING::Fitting problem for feature 124 returning NA
2025-10-16 20:32:36.759398 WARNING::Fitting problem for feature 124 returning NA
2025-10-16 20:32:40.633829 WARNING::Fitting problem for feature 124 returning NA
2025-10-16 20:32:40.826909 WARNING::Deleting existing residuals file: /var/folders/r0/l4fjk6cj5xj0j3brt4bplpl40000gt/T//RtmpNO5ghl/file1382d439056fd/fits/residuals_linear.rds
2025-10-16 20:32:40.859593 WARNING::Deleting existing fitted file: /var/folders/r0/l4fjk6cj5xj0j3brt4bplpl40000gt/T//RtmpNO5ghl/file1382d439056fd/fits/fitted_linear.rds
2025-10-16 20:32:40.881591 WARNING::Deleting existing residuals file: /var/folders/r0/l4fjk6cj5xj0j3brt4bplpl40000gt/T//RtmpNO5ghl/file1382d439056fd/fits/residuals_logistic.rds
2025-10-16 20:32:40.921509 WARNING::Deleting existing fitted file: /var/folders/r0/l4fjk6cj5xj0j3brt4bplpl40000gt/T//RtmpNO5ghl/file1382d439056fd/fits/fitted_logistic.rds
2025-10-16 20:32:49.736346 WARNING::Fitting problem for feature 124 returning NA
2025-10-16 20:32:52.370664 WARNING::Fitting problem for feature 124 returning NA
2025-10-16 20:32:52.467127 WARNING::Deleting existing residuals file: /var/folders/r0/l4fjk6cj5xj0j3brt4bplpl40000gt/T//RtmpNO5ghl/file1382d439056fd/fits/residuals_linear.rds
2025-10-16 20:32:52.499952 WARNING::Deleting existing fitted file: /var/folders/r0/l4fjk6cj5xj0j3brt4bplpl40000gt/T//RtmpNO5ghl/file1382d439056fd/fits/fitted_linear.rds
2025-10-16 20:32:52.522215 WARNING::Deleting existing residuals file: /var/folders/r0/l4fjk6cj5xj0j3brt4bplpl40000gt/T//RtmpNO5ghl/file1382d439056fd/fits/residuals_logistic.rds
2025-10-16 20:32:52.561894 WARNING::Deleting existing fitted file: /var/folders/r0/l4fjk6cj5xj0j3brt4bplpl40000gt/T//RtmpNO5ghl/file1382d439056fd/fits/fitted_logistic.rds
2025-10-16 20:32:59.995685 WARNING::Fitting problem for feature 124 returning NA
2025-10-16 20:33:02.621214 WARNING::Fitting problem for feature 124 returning NA
2025-10-16 20:33:02.712153 WARNING::Deleting existing residuals file: /var/folders/r0/l4fjk6cj5xj0j3brt4bplpl40000gt/T//RtmpNO5ghl/file1382d439056fd/fits/residuals_linear.rds
2025-10-16 20:33:02.745069 WARNING::Deleting existing fitted file: /var/folders/r0/l4fjk6cj5xj0j3brt4bplpl40000gt/T//RtmpNO5ghl/file1382d439056fd/fits/fitted_linear.rds
2025-10-16 20:33:02.76851 WARNING::Deleting existing residuals file: /var/folders/r0/l4fjk6cj5xj0j3brt4bplpl40000gt/T//RtmpNO5ghl/file1382d439056fd/fits/residuals_logistic.rds
2025-10-16 20:33:02.808279 WARNING::Deleting existing fitted file: /var/folders/r0/l4fjk6cj5xj0j3brt4bplpl40000gt/T//RtmpNO5ghl/file1382d439056fd/fits/fitted_logistic.rds
2025-10-16 20:33:09.861456 WARNING::Fitting problem for feature 50 returning NA
2025-10-16 20:33:09.903374 WARNING::Fitting problem for feature 62 returning NA
2025-10-16 20:33:09.93035 WARNING::Fitting problem for feature 74 returning NA
2025-10-16 20:33:09.938322 WARNING::Fitting problem for feature 78 returning NA
2025-10-16 20:33:09.95082 WARNING::Fitting problem for feature 84 returning NA
2025-10-16 20:33:09.977856 WARNING::Fitting problem for feature 96 returning NA
2025-10-16 20:33:09.979938 WARNING::Fitting problem for feature 97 returning NA
2025-10-16 20:33:09.984147 WARNING::Fitting problem for feature 99 returning NA
2025-10-16 20:33:10.017264 WARNING::Fitting problem for feature 114 returning NA
2025-10-16 20:33:10.019449 WARNING::Fitting problem for feature 115 returning NA
2025-10-16 20:33:10.037043 WARNING::Fitting problem for feature 123 returning NA
2025-10-16 20:33:10.052947 WARNING::Fitting problem for feature 130 returning NA
2025-10-16 20:33:10.057907 WARNING::Fitting problem for feature 132 returning NA
2025-10-16 20:33:10.073205 WARNING::Fitting problem for feature 139 returning NA
2025-10-16 20:33:10.097612 WARNING::Fitting problem for feature 150 returning NA
2025-10-16 20:33:15.089706 WARNING::Fitting problem for feature 50 returning NA
2025-10-16 20:33:15.115941 WARNING::Fitting problem for feature 62 returning NA
2025-10-16 20:33:15.142205 WARNING::Fitting problem for feature 74 returning NA
2025-10-16 20:33:15.150174 WARNING::Fitting problem for feature 78 returning NA
2025-10-16 20:33:15.162598 WARNING::Fitting problem for feature 84 returning NA
2025-10-16 20:33:15.189364 WARNING::Fitting problem for feature 96 returning NA
2025-10-16 20:33:15.191474 WARNING::Fitting problem for feature 97 returning NA
2025-10-16 20:33:15.195727 WARNING::Fitting problem for feature 99 returning NA
2025-10-16 20:33:15.229796 WARNING::Fitting problem for feature 114 returning NA
2025-10-16 20:33:15.231859 WARNING::Fitting problem for feature 115 returning NA
2025-10-16 20:33:15.249108 WARNING::Fitting problem for feature 123 returning NA
2025-10-16 20:33:15.263718 WARNING::Fitting problem for feature 130 returning NA
2025-10-16 20:33:15.268254 WARNING::Fitting problem for feature 132 returning NA
2025-10-16 20:33:15.282151 WARNING::Fitting problem for feature 139 returning NA
2025-10-16 20:33:15.306006 WARNING::Fitting problem for feature 150 returning NA
2025-10-16 20:33:15.423792 WARNING::Deleting existing residuals file: /var/folders/r0/l4fjk6cj5xj0j3brt4bplpl40000gt/T//RtmpNO5ghl/file1382d439056fd/fits/residuals_linear.rds
2025-10-16 20:33:15.456237 WARNING::Deleting existing fitted file: /var/folders/r0/l4fjk6cj5xj0j3brt4bplpl40000gt/T//RtmpNO5ghl/file1382d439056fd/fits/fitted_linear.rds
2025-10-16 20:33:15.491493 WARNING::Deleting existing residuals file: /var/folders/r0/l4fjk6cj5xj0j3brt4bplpl40000gt/T//RtmpNO5ghl/file1382d439056fd/fits/residuals_logistic.rds
2025-10-16 20:33:15.663335 WARNING::Deleting existing fitted file: /var/folders/r0/l4fjk6cj5xj0j3brt4bplpl40000gt/T//RtmpNO5ghl/file1382d439056fd/fits/fitted_logistic.rds
2025-10-16 20:33:23.443732 ERROR::Please select a normalization from the list of available options : TSS, CLR, NONE
2025-10-16 20:33:23.449533 ERROR::Please select a transform from the list of available options : LOG, PLOG, NONE
2025-10-16 20:33:23.453406 ERROR::Please select a correction method from the list of available options : BH, holm, hochberg, hommel, bonferroni, BY
2025-10-16 20:33:23.470601 ERROR::No fixed, group, or
ordered effects included in formula.
2025-10-16 20:33:23.476308 ERROR::Effect name not found in metadata: d
2025-10-16 20:33:23.480124 ERROR::No user formula provided
2025-10-16 20:33:23.490249 ERROR::Effect name not found in metadata so not applied to formula as random effect: d
2025-10-16 20:33:23.494809 ERROR::No fixed/group/ordered/
feature-specific effects provided.
2025-10-16 20:33:24.596695 INFO::Writing function arguments to log file
2025-10-16 20:33:24.602431 INFO::Verifying options selected are valid
2025-10-16 20:33:25.44693 INFO::Writing function arguments to log file
2025-10-16 20:33:25.452083 INFO::Verifying options selected are valid
2025-10-16 20:33:25.452506 INFO::Determining format of input files
2025-10-16 20:33:25.452835 INFO::Input format is data samples as rows and metadata samples as rows
2025-10-16 20:33:25.453677 INFO::Running selected normalization method: TSS
2025-10-16 20:33:25.45421 INFO::Creating output feature tables folder
2025-10-16 20:33:25.45459 INFO::Writing normalized data to file /var/folders/r0/l4fjk6cj5xj0j3brt4bplpl40000gt/T//RtmpNO5ghl/file1382d6ccb8ea0/features/data_norm.tsv
2025-10-16 20:33:25.455171 INFO::Filter data based on min abundance, min prevalence, and max prevalence
2025-10-16 20:33:25.455483 INFO::Total samples in data: 16
2025-10-16 20:33:25.455773 INFO::Min samples required with min abundance for a feature not to be filtered: 0.000000
2025-10-16 20:33:25.456059 INFO::Max samples allowed with min abundance for a feature not to be filtered: 16.160000
2025-10-16 20:33:25.456718 INFO::Total filtered features: 0
2025-10-16 20:33:25.457069 INFO::Filtered feature names from abundance, min prevalence, and max prevalence filtering:
2025-10-16 20:33:25.45747 INFO::Total features filtered by non-zero variance filtering: 0
2025-10-16 20:33:25.457788 INFO::Filtered feature names from variance filtering:
2025-10-16 20:33:25.458087 INFO::Writing filtered data to file /var/folders/r0/l4fjk6cj5xj0j3brt4bplpl40000gt/T//RtmpNO5ghl/file1382d6ccb8ea0/features/filtered_data.tsv
2025-10-16 20:33:25.458633 INFO::Running selected transform method: LOG
2025-10-16 20:33:25.459027 INFO::Writing normalized, filtered, transformed data to file /var/folders/r0/l4fjk6cj5xj0j3brt4bplpl40000gt/T//RtmpNO5ghl/file1382d6ccb8ea0/features/data_transformed.tsv
2025-10-16 20:33:25.459627 INFO::Applying z-score to standardize continuous metadata
2025-10-16 20:33:25.461785 INFO::Running the linear model component
2025-10-16 20:33:25.467009 INFO::Fitting model to feature number 1, a
2025-10-16 20:33:25.468581 INFO::Fitting model to feature number 2, b
2025-10-16 20:33:25.469933 INFO::Fitting model to feature number 3, c
2025-10-16 20:33:25.4723 INFO::Counting total values for each feature
2025-10-16 20:33:25.472949 INFO::Running the logistic model component
2025-10-16 20:33:25.478009 INFO::Fitting model to feature number 1, a
2025-10-16 20:33:25.480144 INFO::Fitting model to feature number 2, b
2025-10-16 20:33:25.482015 INFO::Fitting model to feature number 3, c
2025-10-16 20:33:25.484845 INFO::Counting total values for each feature
2025-10-16 20:33:25.485573 INFO::Re-running abundances for warn_prevalence
2025-10-16 20:33:25.485936 INFO::Running selected normalization method: TSS
2025-10-16 20:33:25.486435 INFO::Running selected transform method: LOG
2025-10-16 20:33:25.49165 INFO::Fitting model to feature number 1, a
2025-10-16 20:33:25.493127 INFO::Fitting model to feature number 2, b
2025-10-16 20:33:25.49446 INFO::Fitting model to feature number 3, c
2025-10-16 20:33:25.521137 INFO::Creating fits folder
2025-10-16 20:33:25.521713 INFO::Writing residuals to file /var/folders/r0/l4fjk6cj5xj0j3brt4bplpl40000gt/T//RtmpNO5ghl/file1382d6ccb8ea0/fits/residuals_linear.rds
2025-10-16 20:33:25.522256 INFO::Writing fitted values to file /var/folders/r0/l4fjk6cj5xj0j3brt4bplpl40000gt/T//RtmpNO5ghl/file1382d6ccb8ea0/fits/fitted_linear.rds
2025-10-16 20:33:25.522713 INFO::Writing residuals to file /var/folders/r0/l4fjk6cj5xj0j3brt4bplpl40000gt/T//RtmpNO5ghl/file1382d6ccb8ea0/fits/residuals_logistic.rds
2025-10-16 20:33:25.52317 INFO::Writing fitted values to file /var/folders/r0/l4fjk6cj5xj0j3brt4bplpl40000gt/T//RtmpNO5ghl/file1382d6ccb8ea0/fits/fitted_logistic.rds
2025-10-16 20:33:25.524116 INFO::Writing all the results to file (ordered
by increasing individual q-values): /var/folders/r0/l4fjk6cj5xj0j3brt4bplpl40000gt/T//RtmpNO5ghl/file1382d6ccb8ea0/all_results.tsv
2025-10-16 20:33:25.524813 INFO::Writing the significant results without errors (those which have joint q-values less than or equal to the threshold of 0.100000 ) to file (ordered by increasing individual q-values): /var/folders/r0/l4fjk6cj5xj0j3brt4bplpl40000gt/T//RtmpNO5ghl/file1382d6ccb8ea0/significant_results.tsv
2025-10-16 20:33:25.525344 INFO::Creating output figures folder
2025-10-16 20:33:25.52582 INFO::Writing summary plot of significant
results to file: /var/folders/r0/l4fjk6cj5xj0j3brt4bplpl40000gt/T//RtmpNO5ghl/file1382d6ccb8ea0/figures/summary_plot.pdf
2025-10-16 20:33:26.140674 INFO::Writing association plots (one for each significant association) to output folder: /var/folders/r0/l4fjk6cj5xj0j3brt4bplpl40000gt/T//RtmpNO5ghl/file1382d6ccb8ea0/figures
2025-10-16 20:33:26.141655 INFO::Plotting associations from most to least significant, grouped by metadata
2025-10-16 20:33:26.144092 INFO::Creating boxplot for continuous data (logistic), var1 vs a
2025-10-16 20:33:26.346045 INFO::Writing summary plot of
significant results to file: /var/folders/r0/l4fjk6cj5xj0j3brt4bplpl40000gt/T//RtmpNO5ghl/file1382d6ccb8ea0/figures/summary_plot.pdf
2025-10-16 20:33:26.956132 INFO::Writing association plots (one for each significant association) to output folder: /var/folders/r0/l4fjk6cj5xj0j3brt4bplpl40000gt/T//RtmpNO5ghl/file1382d6ccb8ea0/figures
2025-10-16 20:33:26.956716 INFO::Plotting associations from most to least significant, grouped by metadata
2025-10-16 20:33:26.95855 INFO::Creating boxplot for continuous data (logistic), var1 vs a
2025-10-16 20:33:27.156561 INFO::Running the linear model component
2025-10-16 20:33:27.159515 INFO::Fitting model to feature number 1, a
2025-10-16 20:33:27.161099 INFO::Fitting model to feature number 2, b
2025-10-16 20:33:27.162376 INFO::Fitting model to feature number 3, c
2025-10-16 20:33:27.164834 INFO::Counting total values for each feature
2025-10-16 20:33:27.165409 INFO::Running the logistic model component
2025-10-16 20:33:27.168016 INFO::Fitting model to feature number 1, a
2025-10-16 20:33:27.170116 INFO::Fitting model to feature number 2, b
2025-10-16 20:33:27.171958 INFO::Fitting model to feature number 3, c
2025-10-16 20:33:27.174882 INFO::Counting total values for each feature
2025-10-16 20:33:27.175599 INFO::Re-running abundances for warn_prevalence
2025-10-16 20:33:27.175845 INFO::Running selected normalization method: TSS
2025-10-16 20:33:27.176289 INFO::Running selected transform method: LOG
2025-10-16 20:33:27.179006 INFO::Fitting model to feature number 1, a
2025-10-16 20:33:27.180369 INFO::Fitting model to feature number 2, b
2025-10-16 20:33:27.181576 INFO::Fitting model to feature number 3, c
2025-10-16 20:33:27.210583 INFO::Creating output folder
2025-10-16 20:33:27.211075 INFO::Creating output figures folder
2025-10-16 20:33:27.211525 INFO::Writing summary plot of significant
results to file: /var/folders/r0/l4fjk6cj5xj0j3brt4bplpl40000gt/T//RtmpNO5ghl/file1382d42f42e88/figures/summary_plot.pdf
2025-10-16 20:33:27.837186 INFO::Writing association plots (one for each significant association) to output folder: /var/folders/r0/l4fjk6cj5xj0j3brt4bplpl40000gt/T//RtmpNO5ghl/file1382d42f42e88/figures
2025-10-16 20:33:27.837788 INFO::Plotting associations from most to least significant, grouped by metadata
2025-10-16 20:33:27.839641 INFO::Creating boxplot for continuous data (logistic), var1 vs a
2025-10-16 20:33:28.224088 INFO::Applying z-score to standardize continuous metadata
2025-10-16 20:33:28.226898 INFO::Factor detected for categorial metadata 'c'. Using as-is.
2025-10-16 20:33:28.227188 INFO::Bypass z-score application to metadata
2025-10-16 20:33:28.227952 INFO::Bypass z-score application to metadata
2025-10-16 20:33:28.234815 INFO::Determining format of input files
2025-10-16 20:33:28.235146 INFO::Input format is data samples as rows and metadata samples as rows
2025-10-16 20:33:28.235405 INFO::Input format is data samples as rows and feature_specific_covariate samples as rows
2025-10-16 20:33:28.237587 INFO::Determining format of input files
2025-10-16 20:33:28.237916 INFO::Input format is data samples as columns and metadata samples as rows
2025-10-16 20:33:28.238299 INFO::Input format is feature_specific_covariate samples as columns
2025-10-16 20:33:28.240692 INFO::Determining format of input files
2025-10-16 20:33:28.241 INFO::Input format is data samples as rows and metadata samples as rows
2025-10-16 20:33:28.241309 INFO::Input format is feature_specific_covariate samples as columns
2025-10-16 20:33:28.241777 INFO::The following samples were found to have metadata but no features (or feature specific covariates if applicable). They will be removed. sample1
2025-10-16 20:33:28.241998 INFO::The following samples were found to have feature specific covariates but no features or no metadata. They will be removed. sample1
2025-10-16 20:33:28.245689 INFO::Running selected transform method: LOG
2025-10-16 20:33:28.246057 INFO::Creating output feature tables folder
2025-10-16 20:33:28.246434 INFO::Writing normalized, filtered, transformed data to file /var/folders/r0/l4fjk6cj5xj0j3brt4bplpl40000gt/T//RtmpNO5ghl/file1382d460e07b2/features/data_transformed.tsv
2025-10-16 20:33:28.247822 INFO::Running selected transform method: LOG
2025-10-16 20:33:28.248162 INFO::Writing normalized, filtered, transformed data to file /var/folders/r0/l4fjk6cj5xj0j3brt4bplpl40000gt/T//RtmpNO5ghl/file1382d460e07b2/features/data_transformed.tsv
2025-10-16 20:33:28.249467 INFO::Running selected transform method: PLOG
2025-10-16 20:33:28.250006 INFO::Writing normalized, filtered, transformed data to file /var/folders/r0/l4fjk6cj5xj0j3brt4bplpl40000gt/T//RtmpNO5ghl/file1382d460e07b2/features/data_transformed.tsv
2025-10-16 20:33:28.250981 INFO::Running selected transform method: NONE
2025-10-16 20:33:28.251228 INFO::Writing normalized, filtered, transformed data to file /var/folders/r0/l4fjk6cj5xj0j3brt4bplpl40000gt/T//RtmpNO5ghl/file1382d460e07b2/features/data_transformed.tsv
2025-10-16 20:33:28.254094 INFO::Running the linear model component
2025-10-16 20:33:28.256811 INFO::Fitting model to feature number 1, a
2025-10-16 20:33:28.258366 INFO::Fitting model to feature number 2, b
2025-10-16 20:33:28.259652 INFO::Fitting model to feature number 3, c
2025-10-16 20:33:28.262083 INFO::Counting total values for each feature
2025-10-16 20:33:28.26267 INFO::Running the logistic model component
2025-10-16 20:33:28.265347 INFO::Fitting model to feature number 1, a
2025-10-16 20:33:28.267503 INFO::Fitting model to feature number 2, b
2025-10-16 20:33:28.269402 INFO::Fitting model to feature number 3, c
2025-10-16 20:33:28.280851 INFO::Counting total values for each feature
2025-10-16 20:33:28.281746 INFO::Re-running abundances for warn_prevalence
2025-10-16 20:33:28.282022 INFO::Running selected normalization method: TSS
2025-10-16 20:33:28.282498 INFO::Running selected transform method: LOG
2025-10-16 20:33:28.285598 INFO::Fitting model to feature number 1, a
2025-10-16 20:33:28.287227 INFO::Fitting model to feature number 2, b
2025-10-16 20:33:28.288583 INFO::Fitting model to feature number 3, c
2025-10-16 20:33:28.316769 INFO::Creating output folder
2025-10-16 20:33:28.317214 INFO::Creating fits folder
2025-10-16 20:33:28.317531 INFO::Writing residuals to file /var/folders/r0/l4fjk6cj5xj0j3brt4bplpl40000gt/T//RtmpNO5ghl/file1382d431b5b0c/fits/residuals_linear.rds
2025-10-16 20:33:28.317991 INFO::Writing fitted values to file /var/folders/r0/l4fjk6cj5xj0j3brt4bplpl40000gt/T//RtmpNO5ghl/file1382d431b5b0c/fits/fitted_linear.rds
2025-10-16 20:33:28.318378 INFO::Writing residuals to file /var/folders/r0/l4fjk6cj5xj0j3brt4bplpl40000gt/T//RtmpNO5ghl/file1382d431b5b0c/fits/residuals_logistic.rds
2025-10-16 20:33:28.318761 INFO::Writing fitted values to file /var/folders/r0/l4fjk6cj5xj0j3brt4bplpl40000gt/T//RtmpNO5ghl/file1382d431b5b0c/fits/fitted_logistic.rds
2025-10-16 20:33:28.319624 INFO::Writing all the results to file (ordered
by increasing individual q-values): /var/folders/r0/l4fjk6cj5xj0j3brt4bplpl40000gt/T//RtmpNO5ghl/file1382d431b5b0c/all_results.tsv
2025-10-16 20:33:28.320203 INFO::Writing the significant results without errors (those which have joint q-values less than or equal to the threshold of 0.100000 ) to file (ordered by increasing individual q-values): /var/folders/r0/l4fjk6cj5xj0j3brt4bplpl40000gt/T//RtmpNO5ghl/file1382d431b5b0c/significant_results.tsv
[ FAIL 0 | WARN 16 | SKIP 0 | PASS 95 ]
[ FAIL 0 | WARN 16 | SKIP 0 | PASS 95 ]
>
>
> proc.time()
user system elapsed
137.170 5.202 143.123
maaslin3.Rcheck/maaslin3-Ex.timings
| name | user | system | elapsed | |
| maaslin3 | 8.403 | 0.512 | 8.944 | |
| maaslin_check_arguments | 0.052 | 0.001 | 0.054 | |
| maaslin_check_formula | 0.053 | 0.003 | 0.055 | |
| maaslin_compute_formula | 0.054 | 0.004 | 0.057 | |
| maaslin_contrast_test | 6.614 | 0.710 | 7.592 | |
| maaslin_filter | 0.580 | 0.095 | 0.702 | |
| maaslin_fit | 4.658 | 0.629 | 5.448 | |
| maaslin_log_arguments | 0.053 | 0.003 | 0.056 | |
| maaslin_normalize | 0.125 | 0.013 | 0.137 | |
| maaslin_plot_results | 16.172 | 0.691 | 17.033 | |
| maaslin_plot_results_from_output | 16.308 | 0.548 | 16.921 | |
| maaslin_process_metadata | 0.229 | 0.021 | 0.258 | |
| maaslin_read_data | 0.073 | 0.007 | 0.079 | |
| maaslin_reorder_data | 0.063 | 0.003 | 0.066 | |
| maaslin_transform | 0.278 | 0.020 | 0.301 | |
| maaslin_write_results | 5.316 | 0.572 | 5.903 | |
| maaslin_write_results_lefse_format | 5.552 | 0.313 | 5.869 | |
| preprocess_dna_mtx | 0.001 | 0.000 | 0.001 | |
| preprocess_taxa_mtx | 0.001 | 0.000 | 0.001 | |