Multiple platform build/check report for BioC 3.22 - BUILD results for m6Aboost on taishan

Hostname	OS	Arch (*)	R version	Installed pkgs
nebbiolo2	Linux (Ubuntu 24.04.3 LTS)	x86_64	4.5.1 (2025-06-13) -- "Great Square Root"	4818
lconway	macOS 12.7.1 Monterey	x86_64	4.5.1 (2025-06-13) -- "Great Square Root"	4596
kjohnson3	macOS 13.7.7 Ventura	arm64	4.5.1 Patched (2025-06-14 r88325) -- "Great Square Root"	4538
taishan	Linux (openEuler 24.03 LTS)	aarch64	4.5.0 (2025-04-11) -- "How About a Twenty-Six"	4535
Click on any hostname to see more info about the system (e.g. compilers) () as reported by 'uname -p', except on Windows and Mac OS X*

BUILD results for m6Aboost on taishan

To the developers/maintainers of the m6Aboost package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/m6Aboost.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.
- See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host.

raw results

Summary

Package: m6Aboost

Version: 1.15.1

Command: /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data m6Aboost

StartedAt: 2025-08-15 00:35:49 -0000 (Fri, 15 Aug 2025)

EndedAt: 2025-08-15 00:37:05 -0000 (Fri, 15 Aug 2025)

EllapsedTime: 76.0 seconds

RetCode: 1

Status: ERROR

PackageFile: None

PackageFileSize: NA

Command output

##############################################################################
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### Running command:
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###   /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data m6Aboost
###
##############################################################################
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* checking for file ‘m6Aboost/DESCRIPTION’ ... OK
* preparing ‘m6Aboost’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘m6AboosVignettes.Rmd’ using rmarkdown

Quitting from m6AboosVignettes.Rmd:219-225 [unnamed-chunk-5]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `.stopOnAvailablePkg()`:
! BSgenome.Mmusculus.UCSC.mm10 package is not currently installed.
  You first need to install it, which you can do with:
      library(BiocManager)
      install("BSgenome.Mmusculus.UCSC.mm10")
---
Backtrace:
    ▆
 1. └─m6Aboost::m6Aboost(test, "BSgenome.Mmusculus.UCSC.mm10", normalization = FALSE)
 2.   └─BSgenome::getBSgenome(genome)
 3.     └─BSgenome:::.getBSgenomeObjectFromInstalledPkgname(genome, load.only = load.only)
 4.       └─BSgenome:::.stopOnAvailablePkg(genome)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'm6AboosVignettes.Rmd' failed with diagnostics:
BSgenome.Mmusculus.UCSC.mm10 package is not currently installed.
  You first need to install it, which you can do with:
      library(BiocManager)
      install("BSgenome.Mmusculus.UCSC.mm10")
--- failed re-building ‘m6AboosVignettes.Rmd’

SUMMARY: processing the following file failed:
  ‘m6AboosVignettes.Rmd’

Error: Vignette re-building failed.
Execution halted