Balasubramanian Narasimhan
| Snapshot Date: 2025-01-23 13:40 -0500 (Thu, 23 Jan 2025) |
| git_url: https://git.bioconductor.org/packages/impute |
| git_branch: devel |
| git_last_commit: bd0db5e |
| git_last_commit_date: 2024-10-29 09:22:27 -0500 (Tue, 29 Oct 2024) |
| Back to Multiple platform build/check report for BioC 3.21: simplified long |
|
This page was generated on 2025-01-24 11:41 -0500 (Fri, 24 Jan 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | R Under development (unstable) (2025-01-20 r87609) -- "Unsuffered Consequences" | 4609 |
| palomino7 | Windows Server 2022 Datacenter | x64 | R Under development (unstable) (2025-01-21 r87610 ucrt) -- "Unsuffered Consequences" | 4393 |
| lconway | macOS 12.7.1 Monterey | x86_64 | R Under development (unstable) (2025-01-20 r87609) -- "Unsuffered Consequences" | 3839 |
| kjohnson3 | macOS 13.7.1 Ventura | arm64 | R Under development (unstable) (2025-01-20 r87609) -- "Unsuffered Consequences" | 3835 |
| kunpeng2 | Linux (openEuler 22.03 LTS-SP1) | aarch64 | R Under development (unstable) (2024-11-24 r87369) -- "Unsuffered Consequences" | 4408 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 1022/2286 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| impute 1.81.0 (landing page) Balasubramanian Narasimhan
| nebbiolo1 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | OK | OK | WARNINGS | | ||||||||
| palomino7 | Windows Server 2022 Datacenter / x64 | OK | OK | WARNINGS | OK | | ||||||||
| lconway | macOS 12.7.1 Monterey / x86_64 | ERROR | OK | ERROR | ERROR | |||||||||
| kjohnson3 | macOS 13.7.1 Ventura / arm64 | ERROR | OK | ERROR | ERROR | |||||||||
| kunpeng2 | Linux (openEuler 22.03 LTS-SP1) / aarch64 | OK | OK | WARNINGS | ||||||||||
|
To the developers/maintainers of the impute package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/impute.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: impute |
| Version: 1.81.0 |
| Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:impute.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings impute_1.81.0.tar.gz |
| StartedAt: 2025-01-23 19:13:36 -0500 (Thu, 23 Jan 2025) |
| EndedAt: 2025-01-23 19:13:42 -0500 (Thu, 23 Jan 2025) |
| EllapsedTime: 5.9 seconds |
| RetCode: 1 |
| Status: ERROR |
| CheckDir: impute.Rcheck |
| Warnings: NA |
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### Running command:
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### /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:impute.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings impute_1.81.0.tar.gz
###
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* using log directory ‘/Users/biocbuild/bbs-3.21-bioc/meat/impute.Rcheck’
* using R Under development (unstable) (2025-01-20 r87609)
* using platform: x86_64-apple-darwin20
* R was compiled by
Apple clang version 14.0.0 (clang-1400.0.29.202)
GNU Fortran (GCC) 14.2.0
* running under: macOS Monterey 12.7.6
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘impute/DESCRIPTION’ ... OK
* this is package ‘impute’ version ‘1.81.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘impute’ can be installed ... ERROR
Installation failed.
See ‘/Users/biocbuild/bbs-3.21-bioc/meat/impute.Rcheck/00install.out’ for details.
* DONE
Status: 1 ERROR
See
‘/Users/biocbuild/bbs-3.21-bioc/meat/impute.Rcheck/00check.log’
for details.
impute.Rcheck/00install.out
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###
### Running command:
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### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL impute
###
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* installing to library ‘/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library’
* installing *source* package ‘impute’ ...
** this is package ‘impute’ version ‘1.81.0’
** using staged installation
** libs
using Fortran compiler: ‘GNU Fortran (GCC) 12.2.0’
using SDK: ‘MacOSX11.3.sdk’
/opt/gfortran/bin/gfortran -arch x86_64 -fPIC -Wall -g -O2 -c knnimpute.f -o knnimpute.o
f951: Warning: Nonconforming tab character in column 1 of line 89 [-Wtabs]
f951: Warning: Nonconforming tab character in column 1 of line 91 [-Wtabs]
f951: Warning: Nonconforming tab character in column 1 of line 92 [-Wtabs]
f951: Warning: Nonconforming tab character in column 1 of line 93 [-Wtabs]
f951: Warning: Nonconforming tab character in column 1 of line 94 [-Wtabs]
f951: Warning: Nonconforming tab character in column 1 of line 95 [-Wtabs]
f951: Warning: Nonconforming tab character in column 1 of line 96 [-Wtabs]
f951: Warning: Nonconforming tab character in column 1 of line 97 [-Wtabs]
f951: Warning: Nonconforming tab character in column 1 of line 98 [-Wtabs]
f951: Warning: Nonconforming tab character in column 3 of line 99 [-Wtabs]
f951: Warning: Nonconforming tab character in column 1 of line 100 [-Wtabs]
f951: Warning: Nonconforming tab character in column 1 of line 101 [-Wtabs]
f951: Warning: Nonconforming tab character in column 1 of line 102 [-Wtabs]
f951: Warning: Nonconforming tab character in column 1 of line 103 [-Wtabs]
f951: Warning: Nonconforming tab character in column 3 of line 104 [-Wtabs]
f951: Warning: Nonconforming tab character in column 1 of line 105 [-Wtabs]
f951: Warning: Nonconforming tab character in column 1 of line 106 [-Wtabs]
f951: Warning: Nonconforming tab character in column 1 of line 107 [-Wtabs]
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f951: Warning: Nonconforming tab character in column 1 of line 109 [-Wtabs]
f951: Warning: Nonconforming tab character in column 1 of line 110 [-Wtabs]
f951: Warning: Nonconforming tab character in column 1 of line 111 [-Wtabs]
f951: Warning: Nonconforming tab character in column 1 of line 112 [-Wtabs]
f951: Warning: Nonconforming tab character in column 3 of line 113 [-Wtabs]
f951: Warning: Nonconforming tab character in column 1 of line 114 [-Wtabs]
f951: Warning: Nonconforming tab character in column 1 of line 115 [-Wtabs]
f951: Warning: Nonconforming tab character in column 1 of line 116 [-Wtabs]
f951: Warning: Nonconforming tab character in column 1 of line 117 [-Wtabs]
f951: Warning: Nonconforming tab character in column 3 of line 118 [-Wtabs]
f951: Warning: Nonconforming tab character in column 3 of line 119 [-Wtabs]
f951: Warning: Nonconforming tab character in column 3 of line 120 [-Wtabs]
f951: Warning: Nonconforming tab character in column 1 of line 121 [-Wtabs]
f951: Warning: Nonconforming tab character in column 1 of line 122 [-Wtabs]
knnimpute.f:99:72:
99 | 20 pos(k1+1) = pos(k1)
| 1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 20 at (1)
knnimpute.f:113:72:
113 | 35 pos(k1+1) = pos(k1)
| 1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 35 at (1)
knnimpute.f:168:72:
168 | ratio=dabs(dnew-dold)/dold
| ^
Warning: ‘dold’ may be used uninitialized [-Wmaybe-uninitialized]
knnimpute.f:132:33:
132 | double precision ratio,dold,dnew
| ^
note: ‘dold’ was declared here
clang -arch x86_64 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/x86_64/lib -o impute.so knnimpute.o -L/opt/gfortran/lib/gcc/x86_64-apple-darwin20.0/14.2.0 -L/opt/gfortran/lib -lemutls_w -lheapt_w -lgfortran -lquadmath -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
ld: warning: directory not found for option '-L/opt/gfortran/lib/gcc/x86_64-apple-darwin20.0/14.2.0'
ld: library not found for -lemutls_w
clang: error: linker command failed with exit code 1 (use -v to see invocation)
make: *** [impute.so] Error 1
ERROR: compilation failed for package ‘impute’
* removing ‘/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/impute’