Till Soerensen
| Snapshot Date: 2025-09-30 13:45 -0400 (Tue, 30 Sep 2025) |
| git_url: https://git.bioconductor.org/packages/immunoClust |
| git_branch: devel |
| git_last_commit: 9098b87 |
| git_last_commit_date: 2025-09-18 03:52:53 -0400 (Thu, 18 Sep 2025) |
| Back to Multiple platform build/check report for BioC 3.22: simplified long |
|
This page was generated on 2025-10-01 12:07 -0400 (Wed, 01 Oct 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 24.04.3 LTS) | x86_64 | 4.5.1 Patched (2025-08-23 r88802) -- "Great Square Root" | 4843 |
| lconway | macOS 12.7.1 Monterey | x86_64 | 4.5.1 Patched (2025-09-10 r88807) -- "Great Square Root" | 4631 |
| kjohnson3 | macOS 13.7.7 Ventura | arm64 | 4.5.1 Patched (2025-09-10 r88807) -- "Great Square Root" | 4575 |
| taishan | Linux (openEuler 24.03 LTS) | aarch64 | 4.5.0 (2025-04-11) -- "How About a Twenty-Six" | 4576 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 1042/2337 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| immunoClust 1.41.2 (landing page) Till Soerensen
| nebbiolo2 | Linux (Ubuntu 24.04.3 LTS) / x86_64 | OK | OK | OK | | ||||||||
| lconway | macOS 12.7.1 Monterey / x86_64 | OK | OK | OK | OK | | ||||||||
| kjohnson3 | macOS 13.7.7 Ventura / arm64 | OK | OK | OK | OK | | ||||||||
| taishan | Linux (openEuler 24.03 LTS) / aarch64 | OK | ERROR | skipped | ||||||||||
|
To the developers/maintainers of the immunoClust package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/immunoClust.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. - See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host. |
| Package: immunoClust |
| Version: 1.41.2 |
| Command: /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data immunoClust |
| StartedAt: 2025-09-30 00:43:45 -0000 (Tue, 30 Sep 2025) |
| EndedAt: 2025-09-30 00:47:16 -0000 (Tue, 30 Sep 2025) |
| EllapsedTime: 211.1 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
##############################################################################
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###
### Running command:
###
### /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data immunoClust
###
##############################################################################
##############################################################################
* checking for file ‘immunoClust/DESCRIPTION’ ... OK
* preparing ‘immunoClust’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* running ‘cleanup’
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘immunoClust.Rnw’ using Sweave
Loading required package: flowCore
filtered from above:318
filtered from below:0
cluster 1(N=151) has 2 sub-cluster at 2 (11), ICL=150<>26
split 1 into 2 clusters
cluster 1(N=151) has 2 sub-cluster at 2 (11), ICL=0<>26
Model Refinement takes 0.033 mins(max 1: 0.033)
Fit Model 1 of (6/10) K=1->2 N=302
EM 2 takes 0 mins, 16 iterations
cluster 1(N=97) has 2 sub-cluster at 2 (8), ICL=119<>30
split 1 into 2 clusters
cluster 2(N=209) has 2 sub-cluster at 2 (5), ICL=42<>30
split 2 into 2 clusters
cluster 1(N=97) has 2 sub-cluster at 2 (8), ICL=0<>30
Model Refinement takes 0.05 mins(max 1: 0.033)
Fit Model 2 of (6/10) K=2->4 N=605
EM 4 takes 0 mins, 14 iterations
cluster 1(N=118) has 2 sub-cluster at 2 (15), ICL=82<>34
split 1 into 2 clusters
cluster 4(N=35) has 2 sub-cluster at 2 (7), ICL=32<>34
cluster 2(N=57) has 3 sub-cluster at 4 (48), ICL=14<>34
cluster 3(N=404) has 8 sub-cluster at 8 (39), ICL=3.1<>34
cluster 1(N=118) has 2 sub-cluster at 2 (15), ICL=0<>34
Model Refinement takes 0.067 mins(max 1: 0.033)
Fit Model 3 of (6/10) K=4->5 N=1210
EM 5 takes 0 mins, 9 iterations
cluster 1(N=115) has 2 sub-cluster at 2 (5), ICL=77<>37
split 1 into 2 clusters
cluster 5(N=58) has 4 sub-cluster at 5 (9), ICL=34<>37
cluster 2(N=134) has 6 sub-cluster at 7 (24), ICL=18<>37
cluster 3(N=122) has 2 sub-cluster at 2 (26), ICL=8<>37
cluster 1(N=115) has 2 sub-cluster at 2 (5), ICL=0<>37
Model Refinement takes 0.083 mins(max 4: 0.033)
Fit Model 4 of (6/10) K=5->6 N=2420
EM 6 takes 0 mins, 7 iterations
cluster 4(N=248) has 2 sub-cluster at 2 (9), ICL=69<>41
split 4 into 2 clusters
cluster 6(N=88) has 3 sub-cluster at 3 (9), ICL=48<>41
split 6 into 3 clusters
cluster 2(N=111) has 7 sub-cluster at 7 (30), ICL=29<>41
cluster 1(N=129) has 4 sub-cluster at 4 (26), ICL=19<>41
cluster 3(N=312) has 6 sub-cluster at 6 (43), ICL=14<>41
cluster 1(N=129) has 4 sub-cluster at 4 (26), ICL=0<>41
Model Refinement takes 0.13 mins(max 5: 0.05)
Fit Model 5 of (6/10) K=6->9 N=4841
EM 9 takes 0.017 mins, 7 iterations
cluster 2(N=200) has 2 sub-cluster at 2 (7), ICL=30<>45
cluster 3(N=547) has 2 sub-cluster at 2 (9), ICL=29<>45
cluster 1(N=279) has 4 sub-cluster at 4 (15), ICL=27<>45
cluster 8(N=95) has 3 sub-cluster at 3 (15), ICL=21<>45
cluster 4(N=433) has 4 sub-cluster at 4 (14), ICL=20<>45
cluster 5(N=27) has 2 sub-cluster at 2 (5), ICL=16<>45
cluster 9(N=39) has 4 sub-cluster at 4 (9), ICL=9<>45
cluster 7(N=150) has 4 sub-cluster at 4 (29), ICL=2.7<>45
cluster 1(N=279) has 4 sub-cluster at 4 (15), ICL=0<>45
Model Refinement takes 0.17 mins(max 6: 0.05)
Fit Model 6 of (6/10) K=9->9 N=9682
EM 9 takes 0 mins, 5 iterations
cluster 1(N=557) has 3 sub-cluster at 3 (11), ICL=66<>48
split 1 into 3 clusters
cluster 4(N=916) has 3 sub-cluster at 3 (10), ICL=51<>48
split 4 into 3 clusters
cluster 8(N=159) has 4 sub-cluster at 4 (20), ICL=42<>48
cluster 5(N=50) has 2 sub-cluster at 2 (100), ICL=38<>48
cluster 2(N=392) has 3 sub-cluster at 3 (33), ICL=38<>48
cluster 3(N=1120) has 2 sub-cluster at 2 (5), ICL=36<>48
cluster 9(N=76) has 4 sub-cluster at 5 (15), ICL=10<>48
cluster 7(N=314) has 7 sub-cluster at 8 (42), ICL=5.4<>48
cluster 1(N=557) has 3 sub-cluster at 3 (11), ICL=0<>48
Model Refinement takes 0.23 mins(max 6: 0.067)
Fit Model 7 of (6/10) K=9->13 N=9682
EM 13 takes 0 mins, 3 iterations
cluster 12(N=159) has 4 sub-cluster at 4 (16), ICL=42<>48
cluster 5(N=1120) has 2 sub-cluster at 2 (6), ICL=42<>48
cluster 9(N=51) has 2 sub-cluster at 2 (100), ICL=38<>48
cluster 4(N=391) has 2 sub-cluster at 2 (8), ICL=37<>48
cluster 3(N=75) has 2 sub-cluster at 2 (11), ICL=18<>48
cluster 1(N=356) has 8 sub-cluster at 8 (48), ICL=11<>48
cluster 2(N=181) has 5 sub-cluster at 6 (34), ICL=8.7<>48
cluster 11(N=308) has 2 sub-cluster at 2 (7), ICL=6.1<>48
cluster 8(N=52) has 2 sub-cluster at 2 (100), ICL=5.5<>48
cluster 13(N=75) has 3 sub-cluster at 4 (10), ICL=3.9<>48
cluster 1(N=356) has 8 sub-cluster at 8 (48), ICL=0<>48
Model Refinement takes 0.28 mins(max 10: 0.067)
Fit Model 8 of (6/10) K=13->13 N=9682
EM 13 takes 0 mins, 3 iterations
Process completed at8
Major Iteration (Trans) (6/4) takes 1.1 mins
filtered from above:318
filtered from below:0
cluster 1(N=151) has 2 sub-cluster at 2 (11), ICL=128<>22
split 1 into 2 clusters
cluster 1(N=151) has 2 sub-cluster at 2 (11), ICL=0<>22
Model Refinement takes 0.033 mins(max 1: 0.033)
Fit Model 1 of (6/10) K=1->2 N=302
EM 2 takes 0 mins, 7 iterations
cluster 2(N=89) has 3 sub-cluster at 3 (8), ICL=96<>25
split 2 into 3 clusters
cluster 1(N=216) has 4 sub-cluster at 4 (28), ICL=49<>25
split 1 into 4 clusters
cluster 1(N=216) has 4 sub-cluster at 4 (28), ICL=0<>25
Model Refinement takes 0.033 mins(max 1: 0.017)
Fit Model 2 of (6/10) K=2->7 N=605
EM 6 takes 0 mins, 26 iterations
cluster 4(N=51) has 2 sub-cluster at 2 (100), ICL=42<>28
split 4 into 2 clusters
cluster 6(N=69) has 5 sub-cluster at 6 (35), ICL=35<>28
split 6 into 5 clusters
cluster 5(N=58) has 2 sub-cluster at 2 (100), ICL=30<>28
split 5 into 2 clusters
cluster 3(N=26) has 2 sub-cluster at 2 (9), ICL=14<>28
cluster 2(N=369) has 8 sub-cluster at 8 (66), ICL=12<>28
cluster 1(N=99) has 3 sub-cluster at 4 (20), ICL=7.3<>28
cluster 1(N=99) has 3 sub-cluster at 4 (20), ICL=0<>28
Model Refinement takes 0.067 mins(max 1: 0.017)
Fit Model 3 of (6/10) K=6->12 N=1210
EM 9 takes 0 mins, 50 iterations
cluster 6(N=141) has 3 sub-cluster at 3 (8), ICL=62<>31
split 6 into 3 clusters
cluster 8(N=18) has 2 sub-cluster at 2 (100), ICL=56<>31
split 8 into 2 clusters
cluster 3(N=58) has 3 sub-cluster at 3 (12), ICL=37<>31
split 3 into 3 clusters
cluster 4(N=106) has 5 sub-cluster at 6 (35), ICL=19<>31
cluster 7(N=57) has 5 sub-cluster at 6 (21), ICL=15<>31
cluster 1(N=267) has 6 sub-cluster at 7 (26), ICL=2.2<>31
cluster 1(N=267) has 6 sub-cluster at 7 (26), ICL=0<>31
Model Refinement takes 0.12 mins(max 1: 0.033)
Fit Model 4 of (6/10) K=9->14 N=2420
EM 12 takes 0.017 mins, 43 iterations
cluster 5(N=86) has 2 sub-cluster at 2 (13), ICL=58<>34
split 5 into 2 clusters
cluster 11(N=8) has 2 sub-cluster at 2 (100), ICL=37<>34
split 11 into 2 clusters
cluster 8(N=101) has 4 sub-cluster at 4 (29), ICL=27<>34
cluster 7(N=102) has 4 sub-cluster at 4 (23), ICL=24<>34
cluster 6(N=228) has 5 sub-cluster at 5 (32), ICL=18<>34
cluster 12(N=96) has 4 sub-cluster at 5 (18), ICL=15<>34
cluster 9(N=46) has 2 sub-cluster at 3 (16), ICL=15<>34
cluster 10(N=224) has 5 sub-cluster at 6 (43), ICL=11<>34
cluster 3(N=23) has 2 sub-cluster at 2 (9), ICL=8.6<>34
cluster 3(N=23) has 2 sub-cluster at 2 (9), ICL=0<>34
Model Refinement takes 0.2 mins(max 2: 0.05)
Fit Model 5 of (6/10) K=12->14 N=4841
EM 12 takes 0.017 mins, 11 iterations
cluster 9(N=211) has 4 sub-cluster at 4 (14), ICL=27<>37
cluster 7(N=465) has 3 sub-cluster at 3 (9), ICL=26<>37
cluster 10(N=79) has 6 sub-cluster at 7 (9), ICL=25<>37
cluster 12(N=181) has 3 sub-cluster at 4 (40), ICL=23<>37
cluster 8(N=192) has 7 sub-cluster at 7 (40), ICL=22<>37
cluster 4(N=64) has 5 sub-cluster at 5 (14), ICL=22<>37
cluster 6(N=166) has 6 sub-cluster at 7 (33), ICL=15<>37
cluster 3(N=36) has 3 sub-cluster at 3 (34), ICL=14<>37
cluster 3(N=36) has 3 sub-cluster at 3 (34), ICL=0<>37
Model Refinement takes 0.25 mins(max 1: 0.05)
Fit Model 6 of (6/10) K=12->12 N=9682
EM 12 takes 0.033 mins, 14 iterations
cluster 7(N=916) has 3 sub-cluster at 3 (12), ICL=44<>40
split 7 into 3 clusters
cluster 8(N=392) has 2 sub-cluster at 2 (18), ICL=44<>40
split 8 into 2 clusters
cluster 9(N=433) has 2 sub-cluster at 2 (9), ICL=42<>40
split 9 into 2 clusters
cluster 5(N=49) has 2 sub-cluster at 2 (100), ICL=40<>40
cluster 4(N=122) has 3 sub-cluster at 3 (31), ICL=28<>40
cluster 10(N=167) has 4 sub-cluster at 5 (54), ICL=16<>40
cluster 12(N=316) has 3 sub-cluster at 3 (43), ICL=14<>40
cluster 6(N=315) has 2 sub-cluster at 2 (9), ICL=9.6<>40
cluster 4(N=122) has 3 sub-cluster at 3 (31), ICL=0<>40
Model Refinement takes 0.3 mins(max 1: 0.067)
Fit Model 7 of (6/10) K=12->16 N=9682
EM 16 takes 0 mins, 6 iterations
cluster 4(N=122) has 3 sub-cluster at 3 (31), ICL=28<>40
cluster 14(N=159) has 5 sub-cluster at 5 (45), ICL=24<>40
cluster 10(N=223) has 7 sub-cluster at 8 (26), ICL=20<>40
cluster 3(N=71) has 3 sub-cluster at 4 (22), ICL=20<>40
cluster 13(N=80) has 2 sub-cluster at 2 (7), ICL=19<>40
cluster 11(N=214) has 7 sub-cluster at 8 (38), ICL=14<>40
cluster 9(N=89) has 2 sub-cluster at 2 (15), ICL=14<>40
cluster 12(N=367) has 5 sub-cluster at 5 (69), ICL=12<>40
cluster 6(N=313) has 2 sub-cluster at 2 (10), ICL=10<>40
cluster 5(N=52) has 2 sub-cluster at 2 (9), ICL=9.7<>40
cluster 16(N=339) has 6 sub-cluster at 7 (30), ICL=7.7<>40
cluster 3(N=71) has 3 sub-cluster at 4 (22), ICL=0<>40
Model Refinement takes 0.37 mins(max 1: 0.067)
Fit Model 8 of (6/10) K=16->16 N=9682
EM 16 takes 0 mins, 3 iterations
Process completed at8
Major Iteration (Trans) (6/4) takes 1.4 mins
Fit Model 1 of 10 with 8 clusters
=> results in 8 clusters
Fit Model 2 of 10 with 21 clusters
=> results in 13 clusters
Fit Model 3 of 10 with 23 clusters
=> results in 19 clusters
Fit Model 4 of 10 with 26 clusters
=> results in 21 clusters
Fit Model 5 of 10 with 25 clusters
=> results in 21 clusters
Error: processing vignette 'immunoClust.Rnw' failed with diagnostics:
Running 'texi2dvi' on 'immunoClust.tex' failed.
LaTeX errors:
! LaTeX Error: File `inputenx.sty' not found.
Type X to quit or <RETURN> to proceed,
or enter new name. (Default extension: sty)
! Emergency stop.
<read *>
l.15 ^^M
! ==> Fatal error occurred, no output PDF file produced!
--- failed re-building ‘immunoClust.Rnw’
SUMMARY: processing the following file failed:
‘immunoClust.Rnw’
Error: Vignette re-building failed.
Execution halted