Till Soerensen
| Snapshot Date: 2026-05-05 13:45 -0400 (Tue, 05 May 2026) |
| git_url: https://git.bioconductor.org/packages/immunoClust |
| git_branch: devel |
| git_last_commit: 0c88cb5 |
| git_last_commit_date: 2026-04-28 08:40:46 -0400 (Tue, 28 Apr 2026) |
| Back to Multiple platform build/check report for BioC 3.24: simplified long |
|
This page was generated on 2026-05-06 11:34 -0400 (Wed, 06 May 2026).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 24.04.4 LTS) | x86_64 | 4.6.0 RC (2026-04-17 r89917) -- "Because it was There" | 4878 |
| taishan | Linux (openEuler 24.03 LTS) | aarch64 | 4.5.0 (2025-04-11) -- "How About a Twenty-Six" | 4663 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 1056/2366 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| immunoClust 1.45.0 (landing page) Till Soerensen
| nebbiolo2 | Linux (Ubuntu 24.04.4 LTS) / x86_64 | OK | OK | OK | | ||||||||
| taishan | Linux (openEuler 24.03 LTS) / aarch64 | OK | ERROR | skipped | ||||||||||
| See other builds for immunoClust in R Universe. | ||||||||||||||
|
To the developers/maintainers of the immunoClust package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/immunoClust.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. - See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host. |
| Package: immunoClust |
| Version: 1.45.0 |
| Command: /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data immunoClust |
| StartedAt: 2026-05-05 03:49:48 -0000 (Tue, 05 May 2026) |
| EndedAt: 2026-05-05 03:53:34 -0000 (Tue, 05 May 2026) |
| EllapsedTime: 225.1 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
##############################################################################
##############################################################################
###
### Running command:
###
### /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data immunoClust
###
##############################################################################
##############################################################################
* checking for file ‘immunoClust/DESCRIPTION’ ... OK
* preparing ‘immunoClust’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* running ‘cleanup’
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘immunoClust.Rnw’ using Sweave
Loading required package: flowCore
filtered from above:318
filtered from below:0
cluster 1(N=151) has 2 sub-cluster at 2 (7), ICL=156<>26
split 1 into 2 clusters
cluster 1(N=151) has 2 sub-cluster at 2 (7), ICL=0<>26
Model Refinement takes 0.017 mins(max 1: 0.017)
Fit Model 1 of (6/10) K=1->2 N=302
EM 2 takes 0 mins, 7 iterations
cluster 2(N=93) has 2 sub-cluster at 2 (6), ICL=114<>30
split 2 into 2 clusters
cluster 1(N=211) has 2 sub-cluster at 2 (5), ICL=21<>30
cluster 1(N=211) has 2 sub-cluster at 2 (5), ICL=0<>30
Model Refinement takes 0.033 mins(max 1: 0.017)
Fit Model 2 of (6/10) K=2->3 N=605
EM 3 takes 0 mins, 9 iterations
cluster 2(N=124) has 2 sub-cluster at 2 (5), ICL=86<>34
split 2 into 2 clusters
cluster 1(N=424) has 2 sub-cluster at 2 (15), ICL=74<>34
split 1 into 2 clusters
cluster 3(N=61) has 2 sub-cluster at 2 (100), ICL=1.2<>34
cluster 1(N=424) has 2 sub-cluster at 2 (15), ICL=0<>34
Model Refinement takes 0.033 mins(max 1: 0.017)
Fit Model 3 of (6/10) K=3->5 N=1210
EM 5 takes 0 mins, 7 iterations
cluster 3(N=107) has 2 sub-cluster at 2 (21), ICL=61<>37
split 3 into 2 clusters
cluster 5(N=103) has 2 sub-cluster at 2 (7), ICL=37<>37
split 5 into 2 clusters
cluster 2(N=62) has 3 sub-cluster at 3 (15), ICL=36<>37
cluster 4(N=143) has 7 sub-cluster at 7 (26), ICL=16<>37
cluster 2(N=62) has 3 sub-cluster at 3 (15), ICL=0<>37
Model Refinement takes 0.083 mins(max 1: 0.033)
Fit Model 4 of (6/10) K=5->7 N=2420
EM 7 takes 0 mins, 7 iterations
cluster 2(N=108) has 3 sub-cluster at 3 (7), ICL=51<>41
split 2 into 3 clusters
cluster 5(N=281) has 2 sub-cluster at 2 (6), ICL=31<>41
cluster 4(N=118) has 3 sub-cluster at 3 (25), ICL=16<>41
cluster 6(N=236) has 8 sub-cluster at 8 (39), ICL=14<>41
cluster 3(N=86) has 2 sub-cluster at 2 (15), ICL=8.5<>41
cluster 7(N=19) has 2 sub-cluster at 2 (100), ICL=6.3<>41
cluster 2(N=108) has 3 sub-cluster at 3 (7), ICL=0<>41
Model Refinement takes 0.12 mins(max 1: 0.05)
Fit Model 5 of (6/10) K=7->9 N=4841
EM 9 takes 0.017 mins, 11 iterations
cluster 6(N=269) has 3 sub-cluster at 3 (11), ICL=42<>45
cluster 4(N=76) has 4 sub-cluster at 4 (20), ICL=29<>45
cluster 7(N=560) has 2 sub-cluster at 2 (9), ICL=26<>45
cluster 5(N=185) has 3 sub-cluster at 3 (16), ICL=21<>45
cluster 8(N=481) has 5 sub-cluster at 6 (31), ICL=14<>45
cluster 9(N=29) has 3 sub-cluster at 3 (17), ICL=12<>45
cluster 2(N=141) has 7 sub-cluster at 8 (38), ICL=9.2<>45
cluster 2(N=141) has 7 sub-cluster at 8 (38), ICL=0<>45
Model Refinement takes 0.17 mins(max 1: 0.05)
Fit Model 6 of (6/10) K=9->9 N=9682
EM 9 takes 0.017 mins, 9 iterations
cluster 6(N=557) has 3 sub-cluster at 3 (11), ICL=65<>48
split 6 into 3 clusters
cluster 9(N=60) has 4 sub-cluster at 4 (25), ICL=46<>48
cluster 4(N=157) has 4 sub-cluster at 4 (18), ICL=45<>48
cluster 5(N=392) has 3 sub-cluster at 3 (34), ICL=38<>48
cluster 8(N=908) has 3 sub-cluster at 3 (12), ICL=29<>48
cluster 7(N=1120) has 2 sub-cluster at 2 (18), ICL=27<>48
cluster 3(N=78) has 2 sub-cluster at 3 (8), ICL=0.16<>48
cluster 3(N=78) has 2 sub-cluster at 3 (8), ICL=0<>48
Model Refinement takes 0.23 mins(max 1: 0.067)
Fit Model 7 of (6/10) K=9->11 N=9682
EM 11 takes 0.017 mins, 4 iterations
cluster 10(N=898) has 2 sub-cluster at 2 (34), ICL=54<>48
split 10 into 2 clusters
cluster 4(N=157) has 4 sub-cluster at 4 (18), ICL=45<>48
cluster 5(N=391) has 2 sub-cluster at 2 (8), ICL=37<>48
cluster 9(N=1121) has 2 sub-cluster at 2 (6), ICL=37<>48
cluster 11(N=60) has 2 sub-cluster at 2 (9), ICL=30<>48
cluster 8(N=86) has 2 sub-cluster at 2 (12), ICL=18<>48
cluster 6(N=362) has 6 sub-cluster at 7 (24), ICL=14<>48
cluster 7(N=180) has 6 sub-cluster at 8 (28), ICL=8.2<>48
cluster 3(N=77) has 2 sub-cluster at 2 (100), ICL=8.1<>48
cluster 2(N=307) has 2 sub-cluster at 2 (7), ICL=6.8<>48
cluster 2(N=307) has 2 sub-cluster at 2 (7), ICL=0<>48
Model Refinement takes 0.25 mins(max 1: 0.067)
Fit Model 8 of (6/10) K=11->12 N=9682
EM 12 takes 0.017 mins, 3 iterations
cluster 4(N=157) has 4 sub-cluster at 4 (18), ICL=45<>48
cluster 5(N=391) has 2 sub-cluster at 2 (8), ICL=37<>48
cluster 9(N=1121) has 2 sub-cluster at 2 (6), ICL=37<>48
cluster 12(N=61) has 2 sub-cluster at 2 (9), ICL=31<>48
cluster 8(N=86) has 2 sub-cluster at 2 (6), ICL=18<>48
cluster 6(N=362) has 2 sub-cluster at 2 (7), ICL=12<>48
cluster 7(N=173) has 4 sub-cluster at 5 (18), ICL=11<>48
cluster 3(N=75) has 4 sub-cluster at 5 (18), ICL=11<>48
cluster 2(N=308) has 2 sub-cluster at 2 (7), ICL=7<>48
cluster 2(N=308) has 2 sub-cluster at 2 (7), ICL=0<>48
Model Refinement takes 0.27 mins(max 1: 0.05)
Fit Model 9 of (6/10) K=12->12 N=9682
EM 12 takes 0 mins, 3 iterations
Process completed at9
Major Iteration (Trans) (6/4) takes 1.3 mins
filtered from above:318
filtered from below:0
cluster 1(N=151) has 3 sub-cluster at 3 (12), ICL=154<>22
split 1 into 3 clusters
cluster 1(N=151) has 3 sub-cluster at 3 (12), ICL=0<>22
Model Refinement takes 0.033 mins(max 1: 0.033)
Fit Model 1 of (6/10) K=1->3 N=302
EM 3 takes 0 mins, 10 iterations
cluster 2(N=68) has 3 sub-cluster at 3 (13), ICL=47<>25
split 2 into 3 clusters
cluster 1(N=203) has 3 sub-cluster at 3 (27), ICL=28<>25
split 1 into 3 clusters
cluster 3(N=32) has 2 sub-cluster at 2 (100), ICL=9.6<>25
cluster 1(N=203) has 3 sub-cluster at 3 (27), ICL=0<>25
Model Refinement takes 0.017 mins(max 1: 0.017)
Fit Model 2 of (6/10) K=3->7 N=605
EM 7 takes 0 mins, 16 iterations
cluster 7(N=57) has 2 sub-cluster at 2 (100), ICL=42<>28
split 7 into 2 clusters
cluster 5(N=61) has 2 sub-cluster at 2 (23), ICL=18<>28
cluster 4(N=37) has 2 sub-cluster at 2 (10), ICL=17<>28
cluster 3(N=12) has 2 sub-cluster at 2 (9), ICL=16<>28
cluster 2(N=326) has 6 sub-cluster at 8 (44), ICL=5.5<>28
cluster 1(N=195) has 2 sub-cluster at 2 (20), ICL=3<>28
cluster 1(N=195) has 2 sub-cluster at 2 (20), ICL=0<>28
Model Refinement takes 0.05 mins(max 2: 0.017)
Fit Model 3 of (6/10) K=7->8 N=1210
EM 8 takes 0.017 mins, 50 iterations
cluster 3(N=26) has 3 sub-cluster at 3 (5), ICL=33<>31
split 3 into 3 clusters
cluster 8(N=129) has 2 sub-cluster at 2 (5), ICL=24<>31
cluster 5(N=146) has 6 sub-cluster at 7 (21), ICL=19<>31
cluster 4(N=65) has 2 sub-cluster at 2 (21), ICL=17<>31
cluster 6(N=53) has 2 sub-cluster at 2 (18), ICL=12<>31
cluster 1(N=280) has 5 sub-cluster at 6 (18), ICL=8.4<>31
cluster 1(N=280) has 5 sub-cluster at 6 (18), ICL=0<>31
Model Refinement takes 0.1 mins(max 5: 0.033)
Fit Model 4 of (6/10) K=8->10 N=2420
EM 10 takes 0 mins, 22 iterations
cluster 3(N=22) has 2 sub-cluster at 2 (100), ICL=49<>34
split 3 into 2 clusters
cluster 5(N=11) has 2 sub-cluster at 2 (100), ICL=40<>34
split 5 into 2 clusters
cluster 1(N=771) has 2 sub-cluster at 2 (17), ICL=33<>34
cluster 6(N=128) has 7 sub-cluster at 7 (26), ICL=23<>34
cluster 7(N=285) has 2 sub-cluster at 2 (7), ICL=23<>34
cluster 4(N=25) has 2 sub-cluster at 2 (7), ICL=18<>34
cluster 8(N=108) has 7 sub-cluster at 7 (16), ICL=18<>34
cluster 10(N=208) has 7 sub-cluster at 7 (25), ICL=10<>34
cluster 9(N=9) has 2 sub-cluster at 2 (3), ICL=7.4<>34
cluster 1(N=771) has 2 sub-cluster at 2 (17), ICL=0<>34
Model Refinement takes 0.17 mins(max 2: 0.05)
Fit Model 5 of (6/10) K=10->12 N=4841
EM 10 takes 0 mins, 6 iterations
cluster 1(N=1452) has 2 sub-cluster at 2 (8), ICL=46<>37
split 1 into 2 clusters
cluster 10(N=484) has 3 sub-cluster at 3 (35), ICL=30<>37
cluster 6(N=282) has 3 sub-cluster at 3 (19), ICL=30<>37
cluster 8(N=188) has 2 sub-cluster at 2 (14), ICL=28<>37
cluster 3(N=35) has 2 sub-cluster at 2 (100), ICL=24<>37
cluster 4(N=52) has 3 sub-cluster at 3 (10), ICL=21<>37
cluster 7(N=530) has 2 sub-cluster at 2 (5), ICL=9.8<>37
cluster 5(N=20) has 2 sub-cluster at 2 (7), ICL=9<>37
cluster 9(N=22) has 2 sub-cluster at 2 (5), ICL=3.4<>37
cluster 1(N=1452) has 2 sub-cluster at 2 (8), ICL=0<>37
Model Refinement takes 0.22 mins(max 1: 0.05)
Fit Model 6 of (6/10) K=10->11 N=9682
EM 11 takes 0.033 mins, 27 iterations
cluster 7(N=561) has 3 sub-cluster at 3 (7), ICL=58<>40
split 7 into 3 clusters
cluster 8(N=1114) has 2 sub-cluster at 2 (7), ICL=43<>40
split 8 into 2 clusters
cluster 9(N=391) has 3 sub-cluster at 3 (34), ICL=41<>40
split 9 into 3 clusters
cluster 5(N=59) has 2 sub-cluster at 2 (24), ICL=34<>40
cluster 11(N=916) has 4 sub-cluster at 4 (12), ICL=25<>40
cluster 6(N=108) has 4 sub-cluster at 4 (23), ICL=14<>40
cluster 4(N=74) has 3 sub-cluster at 4 (16), ICL=7.9<>40
cluster 2(N=313) has 2 sub-cluster at 2 (9), ICL=5.3<>40
cluster 2(N=313) has 2 sub-cluster at 2 (9), ICL=0<>40
Model Refinement takes 0.28 mins(max 1: 0.067)
Fit Model 7 of (6/10) K=11->16 N=9682
EM 16 takes 0 mins, 6 iterations
cluster 16(N=906) has 3 sub-cluster at 3 (12), ICL=43<>40
split 16 into 3 clusters
cluster 5(N=40) has 3 sub-cluster at 3 (12), ICL=27<>40
cluster 7(N=273) has 2 sub-cluster at 2 (12), ICL=26<>40
cluster 9(N=103) has 2 sub-cluster at 2 (15), ICL=21<>40
cluster 6(N=108) has 4 sub-cluster at 4 (32), ICL=15<>40
cluster 14(N=118) has 4 sub-cluster at 4 (17), ICL=15<>40
cluster 13(N=136) has 6 sub-cluster at 7 (16), ICL=13<>40
cluster 12(N=222) has 5 sub-cluster at 7 (41), ICL=13<>40
cluster 8(N=264) has 2 sub-cluster at 3 (20), ICL=12<>40
cluster 4(N=73) has 3 sub-cluster at 4 (36), ICL=11<>40
cluster 2(N=309) has 7 sub-cluster at 8 (36), ICL=5.3<>40
cluster 11(N=446) has 7 sub-cluster at 8 (31), ICL=0.15<>40
cluster 2(N=309) has 7 sub-cluster at 8 (36), ICL=0<>40
Model Refinement takes 0.37 mins(max 1: 0.067)
Fit Model 8 of (6/10) K=16->18 N=9682
EM 18 takes 0.017 mins, 4 iterations
cluster 7(N=274) has 2 sub-cluster at 2 (33), ICL=27<>40
cluster 5(N=39) has 3 sub-cluster at 3 (12), ICL=27<>40
cluster 12(N=220) has 5 sub-cluster at 6 (86), ICL=26<>40
cluster 6(N=108) has 5 sub-cluster at 5 (27), ICL=22<>40
cluster 9(N=87) has 6 sub-cluster at 7 (53), ICL=21<>40
cluster 13(N=142) has 6 sub-cluster at 7 (37), ICL=13<>40
cluster 18(N=82) has 2 sub-cluster at 2 (20), ICL=13<>40
cluster 14(N=115) has 5 sub-cluster at 5 (41), ICL=13<>40
cluster 8(N=274) has 7 sub-cluster at 8 (31), ICL=12<>40
cluster 4(N=73) has 3 sub-cluster at 4 (36), ICL=11<>40
cluster 2(N=308) has 5 sub-cluster at 6 (40), ICL=10<>40
cluster 16(N=376) has 7 sub-cluster at 8 (22), ICL=0.74<>40
cluster 2(N=308) has 5 sub-cluster at 6 (40), ICL=0<>40
Model Refinement takes 0.38 mins(max 1: 0.05)
Fit Model 9 of (6/10) K=18->18 N=9682
EM 18 takes 0 mins, 3 iterations
Process completed at9
Major Iteration (Trans) (6/4) takes 1.7 mins
Fit Model 1 of 10 with 8 clusters
=> results in 8 clusters
Fit Model 2 of 10 with 21 clusters
=> results in 13 clusters
Fit Model 3 of 10 with 23 clusters
=> results in 19 clusters
Fit Model 4 of 10 with 26 clusters
=> results in 21 clusters
Fit Model 5 of 10 with 25 clusters
=> results in 21 clusters
Error: processing vignette 'immunoClust.Rnw' failed with diagnostics:
Running 'texi2dvi' on 'immunoClust.tex' failed.
LaTeX errors:
! LaTeX Error: File `inputenx.sty' not found.
Type X to quit or <RETURN> to proceed,
or enter new name. (Default extension: sty)
! Emergency stop.
<read *>
l.15 ^^M
! ==> Fatal error occurred, no output PDF file produced!
--- failed re-building ‘immunoClust.Rnw’
SUMMARY: processing the following file failed:
‘immunoClust.Rnw’
Error: Vignette re-building failed.
Execution halted