Till Soerensen
| Snapshot Date: 2025-08-17 13:45 -0400 (Sun, 17 Aug 2025) |
| git_url: https://git.bioconductor.org/packages/immunoClust |
| git_branch: devel |
| git_last_commit: 40cdc44 |
| git_last_commit_date: 2025-04-15 10:48:52 -0400 (Tue, 15 Apr 2025) |
| Back to Multiple platform build/check report for BioC 3.22: simplified long |
|
This page was generated on 2025-08-18 12:07 -0400 (Mon, 18 Aug 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 24.04.3 LTS) | x86_64 | 4.5.1 (2025-06-13) -- "Great Square Root" | 4818 |
| lconway | macOS 12.7.1 Monterey | x86_64 | 4.5.1 (2025-06-13) -- "Great Square Root" | 4596 |
| kjohnson3 | macOS 13.7.7 Ventura | arm64 | 4.5.1 Patched (2025-06-14 r88325) -- "Great Square Root" | 4538 |
| taishan | Linux (openEuler 24.03 LTS) | aarch64 | 4.5.0 (2025-04-11) -- "How About a Twenty-Six" | 4535 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 1031/2317 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| immunoClust 1.41.0 (landing page) Till Soerensen
| nebbiolo2 | Linux (Ubuntu 24.04.3 LTS) / x86_64 | OK | OK | OK | | ||||||||
| lconway | macOS 12.7.1 Monterey / x86_64 | OK | OK | OK | OK | | ||||||||
| kjohnson3 | macOS 13.7.7 Ventura / arm64 | OK | OK | OK | OK | | ||||||||
| taishan | Linux (openEuler 24.03 LTS) / aarch64 | OK | ERROR | skipped | ||||||||||
|
To the developers/maintainers of the immunoClust package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/immunoClust.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. - See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host. |
| Package: immunoClust |
| Version: 1.41.0 |
| Command: /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data immunoClust |
| StartedAt: 2025-08-15 00:20:40 -0000 (Fri, 15 Aug 2025) |
| EndedAt: 2025-08-15 00:24:56 -0000 (Fri, 15 Aug 2025) |
| EllapsedTime: 255.2 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
##############################################################################
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###
### Running command:
###
### /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data immunoClust
###
##############################################################################
##############################################################################
* checking for file ‘immunoClust/DESCRIPTION’ ... OK
* preparing ‘immunoClust’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* running ‘cleanup’
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘immunoClust.Rnw’ using Sweave
Loading required package: flowCore
filtered from above:318
filtered from below:0
cluster 1(N=151) has 2 sub-cluster at 2 (9), ICL=164<>26
split 1 into 2 clusters
cluster 1(N=151) has 2 sub-cluster at 2 (9), ICL=0<>26
Model Refinement takes 0.017 mins(max 1: 0.017)
Fit Model 1 of (6/10) K=1->2 N=302
EM 2 takes 0 mins, 10 iterations
cluster 2(N=90) has 2 sub-cluster at 2 (6), ICL=109<>30
split 2 into 2 clusters
cluster 1(N=212) has 2 sub-cluster at 2 (100), ICL=36<>30
split 1 into 2 clusters
cluster 1(N=212) has 2 sub-cluster at 2 (100), ICL=0<>30
Model Refinement takes 0.017 mins(max 2: 0.017)
Fit Model 2 of (6/10) K=2->4 N=605
EM 4 takes 0 mins, 21 iterations
cluster 3(N=121) has 2 sub-cluster at 2 (5), ICL=86<>34
split 3 into 2 clusters
cluster 4(N=50) has 2 sub-cluster at 2 (100), ICL=40<>34
split 4 into 2 clusters
cluster 1(N=425) has 3 sub-cluster at 3 (13), ICL=6.6<>34
cluster 1(N=425) has 3 sub-cluster at 3 (13), ICL=0<>34
Model Refinement takes 0.067 mins(max 1: 0.033)
Fit Model 3 of (6/10) K=4->6 N=1210
EM 5 takes 0 mins, 9 iterations
cluster 3(N=104) has 2 sub-cluster at 2 (5), ICL=49<>37
split 3 into 2 clusters
cluster 5(N=117) has 2 sub-cluster at 2 (5), ICL=45<>37
split 5 into 2 clusters
cluster 4(N=162) has 5 sub-cluster at 5 (35), ICL=14<>37
cluster 1(N=819) has 3 sub-cluster at 3 (7), ICL=0.94<>37
cluster 1(N=819) has 3 sub-cluster at 3 (7), ICL=0<>37
Model Refinement takes 0.083 mins(max 1: 0.033)
Fit Model 4 of (6/10) K=5->7 N=2420
EM 7 takes 0 mins, 8 iterations
cluster 1(N=1648) has 3 sub-cluster at 3 (9), ICL=29<>41
cluster 5(N=290) has 2 sub-cluster at 2 (10), ICL=27<>41
cluster 2(N=28) has 2 sub-cluster at 2 (21), ICL=22<>41
cluster 6(N=232) has 7 sub-cluster at 7 (58), ICL=20<>41
cluster 4(N=90) has 5 sub-cluster at 5 (21), ICL=19<>41
cluster 3(N=130) has 6 sub-cluster at 6 (16), ICL=13<>41
cluster 7(N=10) has 2 sub-cluster at 2 (6), ICL=9<>41
cluster 1(N=1648) has 3 sub-cluster at 3 (9), ICL=0<>41
Model Refinement takes 0.13 mins(max 1: 0.05)
Fit Model 5 of (6/10) K=7->7 N=4841
EM 7 takes 0 mins, 9 iterations
cluster 1(N=3286) has 3 sub-cluster at 3 (9), ICL=82<>45
split 1 into 3 clusters
cluster 5(N=568) has 2 sub-cluster at 2 (6), ICL=32<>45
cluster 3(N=284) has 3 sub-cluster at 3 (7), ICL=31<>45
cluster 2(N=84) has 4 sub-cluster at 4 (13), ICL=29<>45
cluster 6(N=440) has 2 sub-cluster at 2 (35), ICL=27<>45
cluster 4(N=187) has 4 sub-cluster at 4 (17), ICL=24<>45
cluster 1(N=3286) has 3 sub-cluster at 3 (9), ICL=0<>45
Model Refinement takes 0.15 mins(max 1: 0.067)
Fit Model 6 of (6/10) K=7->9 N=9682
EM 9 takes 0.017 mins, 6 iterations
cluster 2(N=374) has 2 sub-cluster at 2 (5), ICL=129<>48
split 2 into 2 clusters
cluster 5(N=562) has 3 sub-cluster at 3 (8), ICL=63<>48
split 5 into 3 clusters
cluster 8(N=916) has 3 sub-cluster at 3 (10), ICL=52<>48
split 8 into 3 clusters
cluster 7(N=1121) has 2 sub-cluster at 2 (8), ICL=49<>48
split 7 into 2 clusters
cluster 4(N=157) has 4 sub-cluster at 4 (13), ICL=41<>48
cluster 6(N=392) has 3 sub-cluster at 3 (34), ICL=38<>48
cluster 9(N=50) has 2 sub-cluster at 2 (100), ICL=37<>48
cluster 2(N=374) has 2 sub-cluster at 2 (5), ICL=0<>48
Model Refinement takes 0.27 mins(max 3: 0.067)
Fit Model 7 of (6/10) K=9->15 N=9682
EM 15 takes 0.017 mins, 8 iterations
cluster 14(N=52) has 2 sub-cluster at 2 (100), ICL=44<>48
cluster 9(N=392) has 2 sub-cluster at 2 (13), ICL=41<>48
cluster 15(N=51) has 2 sub-cluster at 2 (100), ICL=38<>48
cluster 5(N=123) has 2 sub-cluster at 2 (8), ICL=30<>48
cluster 11(N=424) has 2 sub-cluster at 2 (6), ICL=20<>48
cluster 8(N=78) has 2 sub-cluster at 2 (19), ICL=17<>48
cluster 6(N=360) has 2 sub-cluster at 2 (5), ICL=15<>48
cluster 7(N=181) has 6 sub-cluster at 8 (36), ICL=12<>48
cluster 3(N=75) has 3 sub-cluster at 4 (12), ICL=4.2<>48
cluster 2(N=309) has 8 sub-cluster at 8 (30), ICL=3.4<>48
cluster 12(N=383) has 7 sub-cluster at 8 (29), ICL=2.5<>48
cluster 2(N=309) has 8 sub-cluster at 8 (30), ICL=0<>48
Model Refinement takes 0.33 mins(max 4: 0.067)
Fit Model 8 of (6/10) K=15->15 N=9682
EM 15 takes 0.017 mins, 3 iterations
Process completed at8
Major Iteration (Trans) (6/4) takes 1.1 mins
filtered from above:318
filtered from below:0
cluster 1(N=151) has 2 sub-cluster at 2 (9), ICL=136<>22
split 1 into 2 clusters
cluster 1(N=151) has 2 sub-cluster at 2 (9), ICL=0<>22
Model Refinement takes 0.017 mins(max 1: 0.017)
Fit Model 1 of (6/10) K=1->2 N=302
EM 2 takes 0 mins, 8 iterations
cluster 2(N=81) has 3 sub-cluster at 3 (10), ICL=108<>25
split 2 into 3 clusters
cluster 1(N=221) has 3 sub-cluster at 3 (20), ICL=35<>25
split 1 into 3 clusters
cluster 1(N=221) has 3 sub-cluster at 3 (20), ICL=0<>25
Model Refinement takes 0.033 mins(max 1: 0.017)
Fit Model 2 of (6/10) K=2->6 N=605
EM 6 takes 0 mins, 19 iterations
cluster 1(N=336) has 2 sub-cluster at 2 (5), ICL=53<>28
split 1 into 2 clusters
cluster 5(N=55) has 2 sub-cluster at 2 (9), ICL=24<>28
cluster 6(N=31) has 6 sub-cluster at 6 (73), ICL=14<>28
cluster 4(N=60) has 3 sub-cluster at 3 (32), ICL=14<>28
cluster 2(N=28) has 2 sub-cluster at 2 (6), ICL=13<>28
cluster 3(N=172) has 2 sub-cluster at 2 (100), ICL=12<>28
cluster 1(N=336) has 2 sub-cluster at 2 (5), ICL=0<>28
Model Refinement takes 0.05 mins(max 1: 0.017)
Fit Model 3 of (6/10) K=6->7 N=1210
EM 7 takes 0.017 mins, 32 iterations
cluster 2(N=16) has 2 sub-cluster at 2 (100), ICL=51<>31
split 2 into 2 clusters
cluster 4(N=376) has 2 sub-cluster at 2 (5), ICL=47<>31
split 4 into 2 clusters
cluster 6(N=110) has 2 sub-cluster at 2 (9), ICL=27<>31
cluster 7(N=53) has 4 sub-cluster at 4 (13), ICL=23<>31
cluster 5(N=136) has 6 sub-cluster at 6 (27), ICL=22<>31
cluster 3(N=65) has 3 sub-cluster at 3 (12), ICL=13<>31
cluster 2(N=16) has 2 sub-cluster at 2 (100), ICL=0<>31
Model Refinement takes 0.1 mins(max 1: 0.017)
Fit Model 4 of (6/10) K=7->9 N=2420
EM 8 takes 0 mins, 9 iterations
cluster 7(N=256) has 2 sub-cluster at 2 (6), ICL=50<>34
split 7 into 2 clusters
cluster 8(N=96) has 5 sub-cluster at 5 (19), ICL=25<>34
cluster 3(N=123) has 5 sub-cluster at 5 (42), ICL=24<>34
cluster 6(N=288) has 8 sub-cluster at 8 (62), ICL=23<>34
cluster 4(N=749) has 3 sub-cluster at 4 (22), ICL=23<>34
cluster 2(N=39) has 2 sub-cluster at 2 (7), ICL=13<>34
cluster 5(N=21) has 2 sub-cluster at 2 (100), ICL=2.7<>34
cluster 2(N=39) has 2 sub-cluster at 2 (7), ICL=0<>34
Model Refinement takes 0.13 mins(max 1: 0.033)
Fit Model 5 of (6/10) K=8->9 N=4841
EM 9 takes 0.017 mins, 9 iterations
cluster 3(N=283) has 3 sub-cluster at 3 (12), ICL=35<>37
cluster 4(N=1546) has 2 sub-cluster at 2 (8), ICL=32<>37
cluster 2(N=81) has 5 sub-cluster at 5 (19), ICL=26<>37
cluster 9(N=192) has 4 sub-cluster at 4 (8), ICL=22<>37
cluster 7(N=443) has 4 sub-cluster at 4 (10), ICL=20<>37
cluster 5(N=30) has 2 sub-cluster at 2 (11), ICL=19<>37
cluster 6(N=535) has 2 sub-cluster at 2 (6), ICL=13<>37
cluster 8(N=27) has 2 sub-cluster at 2 (100), ICL=6.4<>37
cluster 2(N=81) has 5 sub-cluster at 5 (19), ICL=0<>37
Model Refinement takes 0.2 mins(max 1: 0.05)
Fit Model 6 of (6/10) K=9->9 N=9682
EM 9 takes 0 mins, 5 iterations
cluster 3(N=557) has 3 sub-cluster at 3 (7), ICL=61<>40
split 3 into 3 clusters
cluster 2(N=156) has 4 sub-cluster at 4 (18), ICL=49<>40
split 2 into 4 clusters
cluster 9(N=392) has 3 sub-cluster at 3 (34), ICL=41<>40
split 9 into 3 clusters
cluster 4(N=3085) has 4 sub-cluster at 4 (10), ICL=40<>40
cluster 6(N=1121) has 2 sub-cluster at 2 (6), ICL=40<>40
cluster 7(N=908) has 3 sub-cluster at 3 (12), ICL=33<>40
cluster 8(N=60) has 2 sub-cluster at 2 (14), ICL=33<>40
cluster 5(N=74) has 3 sub-cluster at 4 (31), ICL=14<>40
cluster 2(N=156) has 4 sub-cluster at 4 (18), ICL=0<>40
Model Refinement takes 0.27 mins(max 1: 0.067)
Fit Model 7 of (6/10) K=9->16 N=9682
EM 16 takes 0.05 mins, 18 iterations
cluster 12(N=896) has 3 sub-cluster at 3 (11), ICL=50<>40
split 12 into 3 clusters
cluster 13(N=60) has 2 sub-cluster at 2 (9), ICL=31<>40
cluster 8(N=89) has 3 sub-cluster at 3 (23), ICL=20<>40
cluster 6(N=367) has 8 sub-cluster at 8 (35), ICL=19<>40
cluster 3(N=13) has 2 sub-cluster at 2 (100), ICL=18<>40
cluster 9(N=3122) has 4 sub-cluster at 4 (10), ICL=18<>40
cluster 4(N=284) has 3 sub-cluster at 4 (30), ICL=18<>40
cluster 2(N=95) has 3 sub-cluster at 3 (20), ICL=17<>40
cluster 15(N=113) has 3 sub-cluster at 3 (50), ICL=16<>40
cluster 10(N=74) has 3 sub-cluster at 4 (20), ICL=16<>40
cluster 16(N=144) has 7 sub-cluster at 7 (38), ICL=15<>40
cluster 7(N=171) has 6 sub-cluster at 8 (35), ICL=12<>40
cluster 14(N=222) has 5 sub-cluster at 7 (49), ICL=12<>40
cluster 2(N=95) has 3 sub-cluster at 3 (20), ICL=0<>40
Model Refinement takes 0.33 mins(max 9: 0.067)
Fit Model 8 of (6/10) K=16->18 N=9682
EM 18 takes 0.017 mins, 4 iterations
cluster 9(N=3144) has 3 sub-cluster at 3 (10), ICL=87<>40
split 9 into 3 clusters
cluster 5(N=14) has 2 sub-cluster at 2 (100), ICL=48<>40
split 5 into 2 clusters
cluster 15(N=60) has 2 sub-cluster at 2 (7), ICL=33<>40
cluster 4(N=327) has 3 sub-cluster at 4 (10), ICL=21<>40
cluster 8(N=87) has 3 sub-cluster at 3 (25), ICL=19<>40
cluster 6(N=368) has 7 sub-cluster at 7 (22), ICL=19<>40
cluster 3(N=13) has 2 sub-cluster at 2 (100), ICL=18<>40
cluster 7(N=170) has 7 sub-cluster at 8 (60), ICL=16<>40
cluster 10(N=74) has 3 sub-cluster at 4 (20), ICL=16<>40
cluster 2(N=96) has 4 sub-cluster at 4 (27), ICL=15<>40
cluster 17(N=112) has 3 sub-cluster at 3 (43), ICL=13<>40
cluster 18(N=145) has 7 sub-cluster at 8 (20), ICL=11<>40
cluster 16(N=220) has 5 sub-cluster at 8 (30), ICL=5.1<>40
cluster 14(N=283) has 2 sub-cluster at 2 (26), ICL=4<>40
cluster 12(N=389) has 7 sub-cluster at 8 (32), ICL=3.3<>40
cluster 13(N=443) has 7 sub-cluster at 8 (25), ICL=2.5<>40
cluster 2(N=96) has 4 sub-cluster at 4 (27), ICL=0<>40
Model Refinement takes 0.38 mins(max 1: 0.067)
Fit Model 9 of (6/10) K=18->21 N=9682
EM 20 takes 0.067 mins, 21 iterations
cluster 5(N=8) has 2 sub-cluster at 2 (100), ICL=58<>40
split 5 into 2 clusters
cluster 17(N=61) has 2 sub-cluster at 2 (9), ICL=33<>40
cluster 20(N=145) has 8 sub-cluster at 8 (38), ICL=22<>40
cluster 8(N=89) has 5 sub-cluster at 5 (31), ICL=21<>40
cluster 4(N=394) has 2 sub-cluster at 2 (6), ICL=20<>40
cluster 7(N=170) has 6 sub-cluster at 7 (46), ICL=20<>40
cluster 12(N=74) has 4 sub-cluster at 5 (31), ICL=19<>40
cluster 6(N=374) has 3 sub-cluster at 3 (21), ICL=16<>40
cluster 2(N=101) has 4 sub-cluster at 4 (23), ICL=15<>40
cluster 15(N=406) has 3 sub-cluster at 3 (33), ICL=13<>40
cluster 18(N=217) has 6 sub-cluster at 6 (19), ICL=10<>40
cluster 11(N=324) has 2 sub-cluster at 2 (8), ICL=9.2<>40
cluster 19(N=109) has 3 sub-cluster at 3 (28), ICL=8<>40
cluster 16(N=305) has 6 sub-cluster at 7 (42), ICL=6.7<>40
cluster 14(N=392) has 7 sub-cluster at 7 (37), ICL=3.1<>40
cluster 2(N=101) has 4 sub-cluster at 4 (23), ICL=0<>40
Model Refinement takes 0.43 mins(max 1: 0.05)
Fit Model 10 of (6/10) K=20->21 N=9682
EM 20 takes 0.017 mins, 5 iterations
Major Iteration (Trans) (6/4) takes 2.1 mins
Fit Model 1 of 10 with 8 clusters
=> results in 8 clusters
Fit Model 2 of 10 with 21 clusters
=> results in 13 clusters
Fit Model 3 of 10 with 23 clusters
=> results in 19 clusters
Fit Model 4 of 10 with 26 clusters
=> results in 21 clusters
Fit Model 5 of 10 with 25 clusters
=> results in 21 clusters
Error: processing vignette 'immunoClust.Rnw' failed with diagnostics:
Running 'texi2dvi' on 'immunoClust.tex' failed.
LaTeX errors:
! LaTeX Error: File `inputenx.sty' not found.
Type X to quit or <RETURN> to proceed,
or enter new name. (Default extension: sty)
! Emergency stop.
<read *>
l.15 ^^M
! ==> Fatal error occurred, no output PDF file produced!
--- failed re-building ‘immunoClust.Rnw’
SUMMARY: processing the following file failed:
‘immunoClust.Rnw’
Error: Vignette re-building failed.
Execution halted