Till Soerensen
| Snapshot Date: 2025-10-03 13:45 -0400 (Fri, 03 Oct 2025) |
| git_url: https://git.bioconductor.org/packages/immunoClust |
| git_branch: devel |
| git_last_commit: 9098b87 |
| git_last_commit_date: 2025-09-18 03:52:53 -0400 (Thu, 18 Sep 2025) |
| Back to Multiple platform build/check report for BioC 3.22: simplified long |
|
This page was generated on 2025-10-04 12:07 -0400 (Sat, 04 Oct 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 24.04.3 LTS) | x86_64 | 4.5.1 Patched (2025-08-23 r88802) -- "Great Square Root" | 4853 |
| lconway | macOS 12.7.1 Monterey | x86_64 | 4.5.1 Patched (2025-09-10 r88807) -- "Great Square Root" | 4640 |
| kjohnson3 | macOS 13.7.7 Ventura | arm64 | 4.5.1 Patched (2025-09-10 r88807) -- "Great Square Root" | 4585 |
| taishan | Linux (openEuler 24.03 LTS) | aarch64 | 4.5.0 (2025-04-11) -- "How About a Twenty-Six" | 4576 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 1043/2341 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| immunoClust 1.41.2 (landing page) Till Soerensen
| nebbiolo2 | Linux (Ubuntu 24.04.3 LTS) / x86_64 | OK | OK | OK | | ||||||||
| lconway | macOS 12.7.1 Monterey / x86_64 | OK | OK | OK | OK | | ||||||||
| kjohnson3 | macOS 13.7.7 Ventura / arm64 | OK | OK | OK | OK | | ||||||||
| taishan | Linux (openEuler 24.03 LTS) / aarch64 | OK | ERROR | skipped | ||||||||||
|
To the developers/maintainers of the immunoClust package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/immunoClust.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. - See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host. |
| Package: immunoClust |
| Version: 1.41.2 |
| Command: /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data immunoClust |
| StartedAt: 2025-10-03 00:43:39 -0000 (Fri, 03 Oct 2025) |
| EndedAt: 2025-10-03 00:48:11 -0000 (Fri, 03 Oct 2025) |
| EllapsedTime: 272.1 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
##############################################################################
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###
### Running command:
###
### /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data immunoClust
###
##############################################################################
##############################################################################
* checking for file ‘immunoClust/DESCRIPTION’ ... OK
* preparing ‘immunoClust’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* running ‘cleanup’
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘immunoClust.Rnw’ using Sweave
Loading required package: flowCore
filtered from above:318
filtered from below:0
cluster 1(N=151) has 2 sub-cluster at 2 (12), ICL=155<>26
split 1 into 2 clusters
cluster 1(N=151) has 2 sub-cluster at 2 (12), ICL=0<>26
Model Refinement takes 0.017 mins(max 1: 0.017)
Fit Model 1 of (6/10) K=1->2 N=302
EM 2 takes 0 mins, 11 iterations
cluster 1(N=86) has 3 sub-cluster at 3 (9), ICL=108<>30
split 1 into 3 clusters
cluster 2(N=217) has 2 sub-cluster at 2 (7), ICL=58<>30
split 2 into 2 clusters
cluster 1(N=86) has 3 sub-cluster at 3 (9), ICL=0<>30
Model Refinement takes 0.033 mins(max 1: 0.017)
Fit Model 2 of (6/10) K=2->5 N=605
EM 5 takes 0 mins, 12 iterations
cluster 1(N=16) has 2 sub-cluster at 2 (100), ICL=44<>34
split 1 into 2 clusters
cluster 5(N=43) has 2 sub-cluster at 2 (9), ICL=36<>34
split 5 into 2 clusters
cluster 2(N=58) has 5 sub-cluster at 6 (49), ICL=31<>34
cluster 3(N=59) has 3 sub-cluster at 3 (15), ICL=14<>34
cluster 4(N=438) has 3 sub-cluster at 3 (11), ICL=2.7<>34
cluster 1(N=16) has 2 sub-cluster at 2 (100), ICL=0<>34
Model Refinement takes 0.05 mins(max 4: 0.033)
Fit Model 3 of (6/10) K=5->7 N=1210
EM 6 takes 0 mins, 13 iterations
cluster 6(N=48) has 3 sub-cluster at 3 (6), ICL=46<>37
split 6 into 3 clusters
cluster 1(N=54) has 3 sub-cluster at 3 (25), ICL=20<>37
cluster 3(N=136) has 7 sub-cluster at 7 (39), ICL=14<>37
cluster 5(N=68) has 3 sub-cluster at 3 (19), ICL=13<>37
cluster 2(N=99) has 8 sub-cluster at 8 (35), ICL=12<>37
cluster 4(N=810) has 8 sub-cluster at 8 (24), ICL=2<>37
cluster 1(N=54) has 3 sub-cluster at 3 (25), ICL=0<>37
Model Refinement takes 0.1 mins(max 1: 0.017)
Fit Model 4 of (6/10) K=6->8 N=2420
EM 8 takes 0 mins, 8 iterations
cluster 6(N=10) has 2 sub-cluster at 2 (100), ICL=80<>41
split 6 into 2 clusters
cluster 1(N=94) has 2 sub-cluster at 2 (16), ICL=26<>41
cluster 5(N=140) has 6 sub-cluster at 6 (44), ICL=20<>41
cluster 7(N=28) has 2 sub-cluster at 2 (6), ICL=16<>41
cluster 2(N=242) has 7 sub-cluster at 7 (26), ICL=12<>41
cluster 3(N=275) has 7 sub-cluster at 7 (22), ICL=8.7<>41
cluster 8(N=16) has 2 sub-cluster at 2 (100), ICL=1.7<>41
cluster 1(N=94) has 2 sub-cluster at 2 (16), ICL=0<>41
Model Refinement takes 0.13 mins(max 4: 0.05)
Fit Model 5 of (6/10) K=8->9 N=4841
EM 8 takes 0 mins, 7 iterations
cluster 5(N=310) has 3 sub-cluster at 3 (10), ICL=31<>45
cluster 7(N=76) has 3 sub-cluster at 3 (10), ICL=29<>45
cluster 3(N=535) has 2 sub-cluster at 2 (5), ICL=25<>45
cluster 1(N=200) has 2 sub-cluster at 2 (17), ICL=24<>45
cluster 8(N=41) has 2 sub-cluster at 2 (34), ICL=24<>45
cluster 4(N=3237) has 3 sub-cluster at 3 (7), ICL=22<>45
cluster 2(N=449) has 3 sub-cluster at 3 (17), ICL=13<>45
cluster 1(N=200) has 2 sub-cluster at 2 (17), ICL=0<>45
Model Refinement takes 0.17 mins(max 4: 0.067)
Fit Model 6 of (6/10) K=8->8 N=9682
EM 8 takes 0.017 mins, 4 iterations
cluster 4(N=6477) has 3 sub-cluster at 3 (7), ICL=148<>48
split 4 into 3 clusters
cluster 5(N=557) has 3 sub-cluster at 3 (8), ICL=54<>48
split 5 into 3 clusters
cluster 2(N=916) has 3 sub-cluster at 3 (10), ICL=51<>48
split 2 into 3 clusters
cluster 3(N=1121) has 2 sub-cluster at 2 (8), ICL=49<>48
split 3 into 2 clusters
cluster 7(N=157) has 4 sub-cluster at 4 (13), ICL=41<>48
cluster 1(N=392) has 3 sub-cluster at 3 (34), ICL=38<>48
cluster 8(N=74) has 4 sub-cluster at 5 (22), ICL=13<>48
cluster 1(N=392) has 3 sub-cluster at 3 (34), ICL=0<>48
Model Refinement takes 0.22 mins(max 4: 0.067)
Fit Model 7 of (6/10) K=8->15 N=9682
EM 15 takes 0.017 mins, 12 iterations
cluster 13(N=51) has 2 sub-cluster at 2 (100), ICL=38<>48
cluster 1(N=391) has 2 sub-cluster at 2 (8), ICL=37<>48
cluster 14(N=123) has 2 sub-cluster at 2 (8), ICL=30<>48
cluster 6(N=417) has 2 sub-cluster at 2 (6), ICL=19<>48
cluster 10(N=240) has 4 sub-cluster at 4 (43), ICL=17<>48
cluster 15(N=74) has 3 sub-cluster at 4 (46), ICL=13<>48
cluster 12(N=132) has 4 sub-cluster at 4 (20), ICL=11<>48
cluster 4(N=53) has 2 sub-cluster at 2 (100), ICL=6.7<>48
cluster 11(N=276) has 6 sub-cluster at 8 (34), ICL=6<>48
cluster 8(N=310) has 2 sub-cluster at 2 (8), ICL=3.7<>48
cluster 1(N=391) has 2 sub-cluster at 2 (8), ICL=0<>48
Model Refinement takes 0.35 mins(max 7: 0.067)
Fit Model 8 of (6/10) K=15->15 N=9682
EM 15 takes 0.017 mins, 7 iterations
Process completed at8
Major Iteration (Trans) (6/4) takes 1.1 mins
filtered from above:318
filtered from below:0
cluster 1(N=151) has 2 sub-cluster at 2 (13), ICL=124<>22
split 1 into 2 clusters
cluster 1(N=151) has 2 sub-cluster at 2 (13), ICL=0<>22
Model Refinement takes 0.017 mins(max 1: 0.017)
Fit Model 1 of (6/10) K=1->2 N=302
EM 2 takes 0 mins, 6 iterations
cluster 2(N=87) has 3 sub-cluster at 3 (5), ICL=105<>25
split 2 into 3 clusters
cluster 1(N=218) has 6 sub-cluster at 6 (42), ICL=37<>25
split 1 into 6 clusters
Model Refinement takes 0.017 mins(max 1: 0.017)
Fit Model 2 of (6/10) K=2->9 N=605
EM 8 takes 0 mins, 40 iterations
cluster 4(N=12) has 2 sub-cluster at 2 (100), ICL=96<>28
split 4 into 2 clusters
cluster 8(N=49) has 2 sub-cluster at 2 (10), ICL=30<>28
split 8 into 2 clusters
cluster 5(N=12) has 2 sub-cluster at 2 (4), ICL=23<>28
cluster 7(N=81) has 4 sub-cluster at 4 (18), ICL=16<>28
cluster 1(N=182) has 7 sub-cluster at 8 (45), ICL=16<>28
cluster 2(N=157) has 5 sub-cluster at 6 (46), ICL=15<>28
cluster 3(N=154) has 4 sub-cluster at 5 (23), ICL=8.6<>28
cluster 6(N=58) has 2 sub-cluster at 3 (13), ICL=8.4<>28
cluster 1(N=182) has 7 sub-cluster at 8 (45), ICL=0<>28
Model Refinement takes 0.083 mins(max 1: 0.017)
Fit Model 3 of (6/10) K=8->10 N=1210
EM 8 takes 0 mins, 27 iterations
cluster 6(N=148) has 2 sub-cluster at 2 (7), ICL=25<>31
cluster 5(N=115) has 2 sub-cluster at 2 (9), ICL=17<>31
cluster 7(N=52) has 2 sub-cluster at 2 (8), ICL=17<>31
cluster 8(N=53) has 2 sub-cluster at 2 (16), ICL=12<>31
cluster 4(N=20) has 2 sub-cluster at 2 (100), ICL=12<>31
cluster 3(N=386) has 5 sub-cluster at 8 (28), ICL=3.4<>31
cluster 3(N=386) has 5 sub-cluster at 8 (28), ICL=0<>31
Model Refinement takes 0.083 mins(max 1: 0.017)
Fit Model 4 of (6/10) K=8->8 N=2420
EM 8 takes 0.017 mins, 22 iterations
cluster 5(N=259) has 2 sub-cluster at 2 (7), ICL=79<>34
split 5 into 2 clusters
cluster 4(N=55) has 2 sub-cluster at 2 (9), ICL=38<>34
split 4 into 2 clusters
cluster 7(N=135) has 7 sub-cluster at 7 (41), ICL=24<>34
cluster 8(N=95) has 3 sub-cluster at 3 (28), ICL=21<>34
cluster 6(N=284) has 8 sub-cluster at 8 (24), ICL=16<>34
cluster 3(N=623) has 6 sub-cluster at 6 (24), ICL=1.4<>34
cluster 3(N=623) has 6 sub-cluster at 6 (24), ICL=0<>34
Model Refinement takes 0.15 mins(max 1: 0.033)
Fit Model 5 of (6/10) K=8->10 N=4841
EM 10 takes 0.017 mins, 13 iterations
cluster 5(N=29) has 2 sub-cluster at 2 (100), ICL=59<>37
split 5 into 2 clusters
cluster 3(N=1148) has 2 sub-cluster at 2 (22), ICL=51<>37
split 3 into 2 clusters
cluster 6(N=453) has 3 sub-cluster at 3 (8), ICL=34<>37
cluster 10(N=208) has 2 sub-cluster at 2 (10), ICL=33<>37
cluster 9(N=292) has 2 sub-cluster at 2 (7), ICL=30<>37
cluster 4(N=70) has 2 sub-cluster at 2 (14), ICL=26<>37
cluster 7(N=27) has 2 sub-cluster at 2 (6), ICL=26<>37
cluster 8(N=580) has 2 sub-cluster at 2 (8), ICL=12<>37
cluster 3(N=1148) has 2 sub-cluster at 2 (22), ICL=0<>37
Model Refinement takes 0.23 mins(max 1: 0.05)
Fit Model 6 of (6/10) K=10->12 N=9682
EM 11 takes 0.017 mins, 7 iterations
cluster 10(N=561) has 3 sub-cluster at 3 (10), ICL=69<>40
split 10 into 3 clusters
cluster 5(N=156) has 4 sub-cluster at 4 (16), ICL=46<>40
split 5 into 4 clusters
cluster 11(N=392) has 3 sub-cluster at 3 (34), ICL=41<>40
split 11 into 3 clusters
cluster 9(N=1122) has 2 sub-cluster at 2 (6), ICL=38<>40
cluster 7(N=908) has 3 sub-cluster at 3 (12), ICL=33<>40
cluster 8(N=60) has 2 sub-cluster at 2 (14), ICL=32<>40
cluster 3(N=319) has 2 sub-cluster at 2 (9), ICL=11<>40
cluster 6(N=75) has 3 sub-cluster at 4 (10), ICL=2.5<>40
cluster 3(N=319) has 2 sub-cluster at 2 (9), ICL=0<>40
Model Refinement takes 0.35 mins(max 1: 0.067)
Fit Model 7 of (6/10) K=11->18 N=9682
EM 18 takes 0.05 mins, 19 iterations
cluster 10(N=897) has 2 sub-cluster at 2 (26), ICL=57<>40
split 10 into 2 clusters
cluster 5(N=93) has 7 sub-cluster at 7 (15), ICL=37<>40
cluster 11(N=60) has 2 sub-cluster at 2 (10), ICL=31<>40
cluster 7(N=14) has 2 sub-cluster at 2 (100), ICL=28<>40
cluster 14(N=371) has 7 sub-cluster at 7 (33), ICL=20<>40
cluster 15(N=90) has 2 sub-cluster at 2 (12), ICL=19<>40
cluster 9(N=74) has 4 sub-cluster at 5 (32), ICL=19<>40
cluster 6(N=21) has 2 sub-cluster at 2 (8), ICL=14<>40
cluster 16(N=216) has 5 sub-cluster at 5 (43), ICL=14<>40
cluster 13(N=171) has 4 sub-cluster at 5 (36), ICL=10<>40
cluster 3(N=316) has 2 sub-cluster at 2 (8), ICL=9.8<>40
cluster 17(N=112) has 4 sub-cluster at 5 (17), ICL=8.9<>40
cluster 18(N=145) has 6 sub-cluster at 7 (31), ICL=6.8<>40
cluster 8(N=271) has 3 sub-cluster at 3 (21), ICL=5.7<>40
cluster 3(N=316) has 2 sub-cluster at 2 (8), ICL=0<>40
Model Refinement takes 0.4 mins(max 1: 0.05)
Fit Model 8 of (6/10) K=18->19 N=9682
EM 19 takes 0.017 mins, 3 iterations
cluster 7(N=14) has 2 sub-cluster at 2 (100), ICL=44<>40
split 7 into 2 clusters
cluster 12(N=61) has 2 sub-cluster at 2 (10), ICL=32<>40
cluster 16(N=89) has 3 sub-cluster at 4 (31), ICL=20<>40
cluster 18(N=112) has 4 sub-cluster at 4 (20), ICL=19<>40
cluster 8(N=301) has 7 sub-cluster at 8 (41), ICL=18<>40
cluster 19(N=145) has 5 sub-cluster at 5 (35), ICL=18<>40
cluster 15(N=372) has 8 sub-cluster at 8 (23), ICL=17<>40
cluster 17(N=215) has 7 sub-cluster at 8 (48), ICL=16<>40
cluster 6(N=21) has 2 sub-cluster at 2 (8), ICL=14<>40
cluster 9(N=74) has 4 sub-cluster at 5 (21), ICL=14<>40
cluster 5(N=93) has 5 sub-cluster at 5 (35), ICL=13<>40
cluster 14(N=170) has 5 sub-cluster at 7 (43), ICL=13<>40
cluster 3(N=316) has 2 sub-cluster at 2 (8), ICL=9.7<>40
cluster 10(N=399) has 6 sub-cluster at 7 (42), ICL=1.3<>40
cluster 3(N=316) has 2 sub-cluster at 2 (8), ICL=0<>40
Model Refinement takes 0.42 mins(max 2: 0.067)
Fit Model 9 of (6/10) K=19->20 N=9682
EM 19 takes 0 mins, 3 iterations
cluster 12(N=61) has 2 sub-cluster at 2 (10), ICL=33<>40
cluster 7(N=8) has 2 sub-cluster at 2 (100), ICL=32<>40
cluster 16(N=89) has 5 sub-cluster at 5 (40), ICL=22<>40
cluster 18(N=110) has 3 sub-cluster at 3 (21), ICL=21<>40
cluster 8(N=335) has 6 sub-cluster at 8 (45), ICL=17<>40
cluster 15(N=373) has 8 sub-cluster at 8 (24), ICL=17<>40
cluster 5(N=99) has 4 sub-cluster at 4 (16), ICL=17<>40
cluster 19(N=145) has 4 sub-cluster at 4 (40), ICL=15<>40
cluster 9(N=74) has 4 sub-cluster at 5 (21), ICL=14<>40
cluster 6(N=22) has 2 sub-cluster at 2 (7), ICL=13<>40
cluster 14(N=170) has 4 sub-cluster at 5 (23), ICL=12<>40
cluster 17(N=214) has 6 sub-cluster at 7 (38), ICL=10<>40
cluster 3(N=316) has 2 sub-cluster at 2 (8), ICL=9.8<>40
cluster 11(N=557) has 4 sub-cluster at 4 (25), ICL=3.8<>40
cluster 10(N=396) has 6 sub-cluster at 7 (24), ICL=1.5<>40
cluster 3(N=316) has 2 sub-cluster at 2 (8), ICL=0<>40
Model Refinement takes 0.43 mins(max 1: 0.067)
Fit Model 10 of (6/10) K=19->19 N=9682
EM 19 takes 0.017 mins, 3 iterations
Process completed at10
Major Iteration (Trans) (6/4) takes 2.4 mins
Fit Model 1 of 10 with 8 clusters
=> results in 8 clusters
Fit Model 2 of 10 with 21 clusters
=> results in 13 clusters
Fit Model 3 of 10 with 23 clusters
=> results in 19 clusters
Fit Model 4 of 10 with 26 clusters
=> results in 21 clusters
Fit Model 5 of 10 with 25 clusters
=> results in 21 clusters
Error: processing vignette 'immunoClust.Rnw' failed with diagnostics:
Running 'texi2dvi' on 'immunoClust.tex' failed.
LaTeX errors:
! LaTeX Error: File `inputenx.sty' not found.
Type X to quit or <RETURN> to proceed,
or enter new name. (Default extension: sty)
! Emergency stop.
<read *>
l.15 ^^M
! ==> Fatal error occurred, no output PDF file produced!
--- failed re-building ‘immunoClust.Rnw’
SUMMARY: processing the following file failed:
‘immunoClust.Rnw’
Error: Vignette re-building failed.
Execution halted